pengchy's network [29 articles] Export

Recent papers added to pengchy's library classified by the tag network. You can also see everyone's network.

	Large-scale analysis of Arabidopsis transcription reveals a basal co-regulation network [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 86. by Osnat Atias, Benny Chor, Daniel Chamovitz posted to network co-regulation co-expression by pengchy on 2009-09-15 04:18:13 as along with 3 people TRHvidsten rmk coffeerv
	MicroRNA regulation of a cancer network: Consequences of the feedback loops involving miR-17-92, E2F, and Myc [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 50. (16 December 2008), pp. 19678-19683. by Baltazar D. Aguda, Yangjin Kim, Melissa G. Piper-Hunter, Avner Friedman, Clay B. Marsh posted to microrna model network transcriptional_factor by pengchy on 2009-01-12 04:49:11 as along with 4 people and 1 group jfr heliopais myzhang vvoorr microRNA
	Studying alternative splicing regulatory networks through partial correlation analysis [My Copy] Genome Biology, Vol. 10, No. 1. (2009), R3. by Liang Chen, Sika Zheng posted to alternative-splicing deep-sequencing network transcriptome by pengchy on 2009-01-11 01:19:04 as along with 3 people cajunsushi lptolik daforerog
	minet: A R/Bioconductor Package for Inferring Large Transcriptional Networks Using Mutual Information [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 461. by Patrick Meyer, Frederic Lafitte, Gianluca Bontempi posted to network r_package transcriptional_regulatory by pengchy on 2008-12-30 12:06:46 as along with 9 people sotacam jfr dswan guhjy lptolik renatomilani phoenixzxl druvus natstreet
	Conservation and Coevolution in the Scale-Free Human Gene Coexpression Network [My Copy] Mol Biol Evol, Vol. 21, No. 11. (1 November 2004), pp. 2058-2070. by I. King Jordan, Leonardo Marino-Ramirez, Yuri I. Wolf, Eugene V. Koonin posted to co-expression evolution network by pengchy on 2008-12-30 07:59:23 as along with 4 people daveGerrard dragonrez bjorns Garamonfok
	p53-Repressed miRNAs are involved with E2F in a feed-forward loop promoting proliferation. [My Copy] Molecular systems biology, Vol. 4 (25 November 2008) by Ran Brosh, Reut Shalgi, Atar Liran, et al.Gilad Landan, Katya Korotayev, Giang Huong H. Nguyen, Espen Enerly, Hilde Johnsen, Yosef Buganim, Hilla Solomon, Ido Goldstein, Shalom Madar, Naomi Goldfinger, Anne-Lise L. Børresen-Dale, Doron Ginsberg, Curtis C. Harris, Yitzhak Pilpel, Moshe Oren, Varda Rotter posted to microrna network p53 by pengchy on 2008-12-22 04:33:40 as along with 3 people and 1 group gdb myzhang jfr microRNA
	Arena3D: visualization of biological networks in 3D [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Georgios Pavlopoulos, Sean O'Donoghue, Venkata Satagopam, Theodoros Soldatos, Evangelos Pafilis, Reinhard Schneider posted to 3d network software visualization by pengchy on 2008-12-03 00:22:25 as along with 12 people TRHvidsten guhjy polivares lptolik oteri oelemento dswan renatomilani reyez barriot GeeSharpMinor druvus
	A survey of visualization tools for biological network analysis. [My Copy] BioData Mining posted to network review software visualization by pengchy on 2008-12-02 07:28:18 as along with 2 people pinney guhjy
	Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (03 November 2008), 467. by Weijun Luo, Kurt Hankenson, Peter Woolf posted to network transcriptional_regulatory by pengchy on 2008-11-23 03:25:07 as along with 8 people sotacam kemalpak msuarezdiez jfr lptolik druvus isimpson sjung
	Identifying differentially expressed subnetworks with MMG. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 23. (1 December 2008), pp. 2792-2793. by J. Noirel, G. Sanguinetti, P. C. Wright posted to differenial_expression network software by pengchy on 2008-11-23 02:36:24 as along with 11 people zufar pauldobson jfr sg45653 behindtherabbit roys jiayi369 tmmurali bertelsen guhjy rdiaz
	Network motifs: theory and experimental approaches [My Copy] Nature Reviews Genetics, Vol. 8, No. 6. (01 June 2007), pp. 450-461. by Uri Alon posted to motif network by pengchy on 2008-10-20 13:35:56 as along with 33 people and 4 groups yoshiness Katieleonard nurban mjoach vtraag mlee1 myzhang hkuhn mtagaya cambray dswan renatomilani heliopais snow_dragon druvus cswinburne dlobo kentz icases aalibes cmmorel jtaylor dbikard margaritis shigepong zwang grinfish Pascalichouchou xingxu karfunkel vietanh0 haarcuba Borelli GEB TNT Centre de Recherches Interdisciplinaires SynBioSys
	Genetic networks for the functional study of genomes [My Copy] Brief Funct Genomic Proteomic, Vol. 7, No. 4. (1 July 2008), pp. 249-263. by Antonio G. Pisabarro, Gumer Perez, Jose L. Lavin, Lucia Ramirez posted to genome network review by pengchy on 2008-10-19 13:21:19 as along with 1 person operon
	A genomewide functional network for the laboratory mouse. [My Copy] PLoS computational biology, Vol. 4, No. 9. (2008), e1000165. by Y. Guan, C. L. Myers, R. Lu, I. R. Lemischka, C. J. Bult, O. G. Troyanskaya posted to data-integration functional_inference mouse network predict by pengchy on 2008-10-19 13:07:58 as along with 9 people roys dansullivanblk biomcgary cswinburne zwang ptrobajo guhjy grahamc tmmurali
	Analysis of regulatory network topology reveals functionally distinct classes of microRNAs [My Copy] Nucl. Acids Res., Vol. 36, No. 20. (1 November 2008), pp. 6494-6503. by Xueping Yu, Jimmy Lin, Donald J. Zack, Joshua T. Mendell, Jiang Qian posted to interaction microrna network transcriptional_factor by pengchy on 2008-10-19 07:29:47 as along with 9 people and 2 groups megraw jfr emptyhb ealloza mtagaya heliopais giovenko samgj snow_dragon BenosLab microRNA
	Combinatorial microRNAs: working together to make a difference. [My Copy] Cell cycle (Georgetown, Tex.), Vol. 7, No. 20. (4 October 2008), pp. 3137-3142. by Irena Ivanovska, Michele A. Cleary posted to co-expression combinatorial microrna network review by pengchy on 2008-10-19 02:23:25 as along with 2 people jfr samgj
	A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology [My Copy] Nat Biotech, Vol. 26, No. 10. (09 October 2008), pp. 1155-1160. by Markus J. Herrgard, Neil Swainston, Paul Dobson, et al.Warwick B. Dunn, K. Yalcin Arga, Mikko Arvas, Nils Buthgen, Simon Borger, Roeland Costenoble, Matthias Heinemann, Michael Hucka, Nicolas Le Novere, Peter Li, Wolfram Liebermeister, Monica L. Mo, Ana P. Oliveira, Dina Petranovic, Stephen Pettifer, Evangelos Simeonidis, Kieran Smallbone, Irena Spasie, Dieter Weichart, Roger Brent, David S. Broomhead, Hans V. Westerhoff, Betul Kurdar, Merja Penttila, Edda Klipp, Bernhard O. Palsson, Uwe Sauer, Stephen G. Oliver, Pedro Mendes, Jens Nielsen, Douglas B. Kell posted to metabolomic_network network yeast by pengchy on 2008-10-10 06:16:08 as along with 22 people and 2 groups m_j pmendes windman83 jfr raiyar neilswainston irenas JeremyZucker chasmand schwartzjmc pinney pauldobson alaninmcr allysonlister zwang guhjy dbk michaelbarton ptrobajo neils dullhunk tmmurali MetabolicModeling BergmanLab
	Understanding Network Concepts in Modules [My Copy] BMC Systems Biology, Vol. 1, No. 1. (2007) by Jun Dong, Steve Horvath posted to module network by pengchy on 2008-10-09 09:34:16 as along with 7 people and 1 group schwartzjmc druvus jfr kengg grahamc natstreet kaihsyn Bioinformatics
	Geometric interpretation of gene coexpression network analysis. [My Copy] PLoS computational biology, Vol. 4, No. 8. (15 August 2008), e1000117. by Steve Horvath, Jun Dong posted to analysis co-expression network by pengchy on 2008-10-09 09:06:53 as along with 22 people jeremymiller zufar dolchan sficklin isimpson rdiaz guhjy cswinburne jfr ptrobajo nolodie druvus aramesh2 kengg roys Ema tmmurali Borelli Totobox AbnerCYH davidchavalarias caseybrown
	A general framework for weighted gene co-expression network analysis. [My Copy] Statistical applications in genetics and molecular biology, Vol. 4, No. 1. (2005) by Bin Zhang, Steve Horvath posted to co-expression network by pengchy on 2008-10-09 08:29:51 as along with 8 people and 1 group bertelsen rdiaz cswinburne druvus kengg jeremymiller natstreet jo_davies GeschwindLab
	Discovering functions and revealing mechanisms at molecular level from biological networks [My Copy] PROTEOMICS, Vol. 7, No. 16. (17 August 2007), pp. 2856-2869. by Shihua Zhang, Guangxu Jin, Xiang-Sun Zhang, Luonan Chen posted to functional_inference network by pengchy on 2008-10-09 07:56:39 as along with 4 people stharward cmmorel maralena guhjy
	Cross-species analysis of biological networks by Bayesian alignment. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 29. (18 July 2006), pp. 10967-10972. by Johannes Berg, Michael Lässig posted to bayes co-expression cross-species evolution network by pengchy on 2008-10-09 07:08:30 as along with 5 people and 1 group roys jeremymiller guhjy adepace bpcusack EisenLab
	Conservation and evolution of gene coexpression networks in human and chimpanzee brains [My Copy] PNAS, Vol. 103, No. 47. (21 November 2006), pp. 17973-17978. by Michael C. Oldham, Steve Horvath, Daniel H. Geschwind posted to co-expression conservation evolution human network by pengchy on 2008-10-09 05:54:19 as along with 10 people and 2 groups natstreet druvus balicea adepace kengg EsepBib jeremymiller cckan nosada17 giovanni EisenLab GeschwindLab
	Getting connected: analysis and principles of biological networks [My Copy] Genes & Development, Vol. 21, No. 9. (1 May 2007), pp. 1010-1024. by Xiaowei Zhu, Mark Gerstein, Michael Snyder posted to analysis network review by pengchy on 2008-10-09 05:52:41 as along with 16 people abhishek_tiwari arsyed nzm jaimie ptrobajo davidecellai jfr balajis grahamc fishtank nedwards naegele Evangelia kristen carlk renatomilani
	Current progress in network research: toward reference networks for key model organisms [My Copy] Brief Bioinform, Vol. 8, No. 5. (1 September 2007), pp. 318-332. by Balaji S. Srinivasan, Nigam H. Shah, Jason A. Flannick, Eduardo Abeliuk, Antal F. Novak, Serafim Batzoglou posted to network review by pengchy on 2008-10-09 05:47:08 as along with 10 people and 1 group carlk abhishek_tiwari akshayk ptrobajo guhjy grahamc nedwards roys daed marck Bioinformatics
	BNArray: an R package for constructing gene regulatory networks from microarray data by using Bayesian network [My Copy] Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2952-2954. by Chen, Xiaohui, Chen, Ming, Ning, Kaida posted to bayes_network microarray network r_package regulate_network by pengchy on 2008-10-09 04:10:21 as along with 3 people guhjy jhatrimatri srp33
	A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules [My Copy] Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255. by Joshua M. Stuart, Eran Segal, Daphne Koller, Stuart K. Kim posted to co-expression conserved_module module network by pengchy on 2008-10-09 03:30:26 as along with 24 people and 7 groups sficklin roys thegoose2 cswinburne carlk saket nolodie jeremymiller tharris dragonrez textoris lfriedl balajis nuke2005 maryee tardigrade opheliav wnpx neveaire macle raylim lp2 karfunkel vertikalist C. elegans / WormBase kdl Biostatistics Computational-Genomics Bioinformatics Neuroscience BTS-PT-AS-CS
	Gene module level analysis: identification to networks and dynamics [My Copy] Current Opinion in Biotechnology, Vol. 19, No. 5. (October 2008), pp. 482-491. by X. Wang, E. Dalkic, M. Wu, C. Chan posted to module network review by pengchy on 2008-10-06 02:15:30 as along with 1 person aviad_work
	Network-based prediction of protein function [My Copy] Molecular Systems Biology, Vol. 3 (13 March 2007) by Roded Sharan, Igor Ulitsky, Ron Shamir posted to network predict protein_function review by pengchy on 2008-10-06 02:05:50 as along with 24 people and 1 group cerca ptrobajo kiekyon AbnerCYH roys jwhitney dragonrez Sonix mtaschuk babakap phoenixzxl druvus jjray cmmorel wnpx julius mikaelhuss massivemayhem cjeans iris_2001 karfunkel mingzhi ellakat carlk SysbioMPI-TCells
	Dissecting microregulation of a master regulatory network. [My Copy] BMC genomics, Vol. 9 (23 February 2008), 88. by A. U. Sinha, V. Kaimal, J. Chen, A. G. Jegga posted to microrna network p53 by pengchy on 2008-09-26 07:35:29 as along with 4 people and 1 group jfr danaiancu tonamswish guhjy microRNA

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microrna	73
microarray	37
review	37
network	29
software	25
genome	22
predict	21
target	17
comparative_analysis	16
co-expression	15
human	15
method	13
database	12
deep-sequencing	12
evolution	12
evaluate	9
model	9
next-generation-sequencing	9
mirna	8
transcriptional_factor	8
algorithm	7
sequencing	7
analysis	6
combinatorial	6
conservation	6
functional_inference	6
promoter	6
small_rna	6
alternative-splicing	5
comparative_genomics	5
drug-discovery	5
how_do_research	5
integrate	5
r	5
snp	5
cluster	4
cnv	4
disease	4
drosophila	4
gwas	4
module	4
statistics	4
systems_biology	4
assembly	3
biochemical_method	3
bioconductor	3
cancer	3
commentary	3
differenial_expression	3
est	3
expression-profiles	3
mechanism	3
motif	3
ncrna	3
pathway	3
perspective	3
phylogenetic	3
proteomics	3
rna-seq	3
sequence_map	3
transcriptional_regulatory	3
transcriptome	3
visualization	3
annotation	2
antisense	2
bayes	2
bayes_network	2
bioinformatic	2
classification	2
computational	2
data-integration	2
expression	2
gene-expression	2
gene-set-enrichment	2
genom	2
interaction	2
metabolomics	2
missing-value	2
mouse	2
msa	2
muscle	2
normalization	2
p53	2
parallel	2
personal	2
plant	2
ppi	2
profiling	2
regulate_network	2
repression	2
r_package	2
semantic_similarity	2
short_read_assembler	2
species-specific	2
targetscan	2
tissue-specific	2
webserver	2
2-de	1
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ago	1
alignment	1
arabidopsis	1
array	1
behavior	1
binding_sites	1
biomedicine	1
biowiki	1
blood-pressure	1
cell-free	1
china	1
chip-chip	1
citation	1
clinical	1
clustering	1
cog	1
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coregulation	1
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cross-species	1
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data_transformation	1
dchip	1
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design	1
display	1
downregulation	1
duplication	1
editorial	1
encode	1
entropy	1
epigenome	1
exactfdr	1
example	1
exon-array	1
experimental_approach	1
experimental_design	1
fantom4	1
fdr	1
fragile_sites	1
full-length-cdna	1
funding	1
gene-behavior	1
gene_ontology	1
gene-ontology	1
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genetic-interaction	1
genome-annotation	1
genomic_organization	1
gsea	1
gui	1
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image	1
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map	1
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phastcons	1
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poorly-sequenced-genome	1
porcine	1
postdoctoral	1
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process	1
project	1
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sage	1
scent	1
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simulate	1
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solexa	1
special-issue	1
structure	1
structure-biology	1
survey	1
survival-time	1
svd	1
svm	1
synthetic-biology	1
technology	1
tiling_array	1
time-course	1
transcription	1
trna	1
ucr	1
unsequenced	1
variance	1
venn-diagram	1
visualisation	1
web	1
web_tool	1
wgcna	1
wheat	1
yeast	1

pengchy's network [29 articles] Export

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