Register | Log in | FAQ      [?] 
Recent | Unread | Search | Authors | Tags | Export

penka's library [243 articles]

Recent papers added to penka's library.
  • Intron Size and Exon Evolution in Drosophila
    posted to a_protein_evolution by penka on 2007-11-07 09:47:08 as **
  • Accurate Inference and Estimation in Population Genomics
    Molecular Biology and Evolution, Vol. 23, No. 5. (15 May 2006), pp. 911-918.
    by Matthew W Hahn
    posted to a_poly by penka on 2007-11-07 09:45:22 as **
  • Polymorphism in the alpha 1 helix of the HLA-B heavy chain can have an overriding influence on peptide-binding specificity
    J Immunol, Vol. 158, No. 4. (15 February 1997), pp. 1660-1669.
    by Ld Barber, L Percival, Kl Arnett, Je Gumperz, L Chen, P Parham
    posted to a_poly by penka on 2007-11-03 00:08:18 as **
  • Sequence Polymorphism, Predicted Secondary Structures, and Surface-Exposed Conformational Epitopes of Campylobacter Major Outer Membrane Protein
    Infect. Immun., Vol. 68, No. 10. (1 October 2000), pp. 5679-5689.
    by Qijing Zhang, Jerrel C Meitzler, Shouxiong Huang, Teresa Morishita
    posted to a_poly by penka on 2007-11-03 00:06:33 as **
  • Effect of secondary structure on single nucleotide polymorphism detection with a porous microarray matrix; implications for probe selection.
    Biotechniques, Vol. 34, No. 5. (May 2003)
    by RM Anthony, AR Schuitema, AB Chan, PJ Boender, PR Klatser, L Oskam
    posted to a_poly a_top by penka on 2007-11-02 23:08:35 as **
  • Tracking adaptive evolutionary events in genomic sequences
    Genome Biology, Vol. 3, No. 6. (2002), pp. reviews1018.1-reviews1018.4.
    by David Liberles, Marta Wayne
    posted to a_top by penka on 2007-11-01 10:14:04 as **
  • CJO - Abstract - Prediction of protein function from protein sequence and structure
    posted to a_goodinfo by penka on 2007-11-01 10:13:02 as **
  • The evolution of protein structures.
    Cold Spring Harb Symp Quant Biol, Vol. 52 (1987), pp. 399-405.
    by C Chothia, AM Lesk
    posted to a_new by penka on 2007-11-01 10:11:39 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Protein structure prediction: inroads to biology.
    Mol Cell, Vol. 20, No. 6. (22 December 2005), pp. 811-819.
    by D Petrey, B Honig
    posted to a_goodinfo by penka on 2007-11-01 10:11:05 as ** along with 3 people and 2 groups vavi marcius Haggan BioinfoCIPF SGU-CIPF
  • A tour of structural genomics.
    Nat Rev Genet, Vol. 2, No. 10. (October 2001), pp. 801-809.
    by SE Brenner
    posted to a_goodinfo by penka on 2007-11-01 10:10:35 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Introduction to informatics approaches in structural genomics: modeling and representation of function from macromolecular structure.
    Pac Symp Biocomput (2005), pp. 319-321.
    by PC Babbitt, PE Bourne, SD Mooney
    posted to a_new by penka on 2007-11-01 09:51:11 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Structural genomics analysis of alternative splicing and application to isoform structure modeling.
    Proc Natl Acad Sci U S A (14 December 2005)
    by Peng Wang, Bo Yan, Jun-Tao T Guo, Chindo Hicks, Ying Xu
    posted to a_splicing a_structure a_top by penka on 2007-11-01 08:37:40 as ** along with 3 people and 2 groups Cortel shuns marcius BioinfoCIPF SGU-CIPF
  • Sequence evolution and the mechanism of protein folding.
    Biophys J, Vol. 79, No. 4. (October 2000), pp. 1787-1799.
    by AR Ortiz, J Skolnick
    posted to a_tertiary_evolution by penka on 2007-11-01 08:30:09 as ** along with 2 people and 2 groups marcius cjeans BioinfoCIPF SGU-CIPF
  • Protein stability imposes limits on organism complexity and speed of molecular evolution
    Proceedings of the National Academy of Sciences, Vol. 104, No. 41. (9 October 2007), pp. 16152-16157.
    by Konstantin B Zeldovich, Peiqiu Chen, Eugene I Shakhnovich
    posted to a_tertiary_evolution by penka on 2007-11-01 08:29:07 as ** along with 4 people operon cjeans cactus cdeane
  • Visible volume: a robust measure for protein structure characterization.
    J Mol Biol, Vol. 273, No. 1. (17 October 1997), pp. 338-348.
    by L Lo Conte, TF Smith
    posted to a_features by penka on 2007-11-01 08:23:30 as ** along with 1 person vavi
  • Introduction To Monte Carlo Algorithms
    (14 Nov 1998)
    by Werner Krauth
    edited by J Kertesz, Kondor
    posted to a_software by penka on 2007-11-01 08:20:14 as ** along with 8 people ansobol stephensalomons dgront gane5h rabio ujarmatokyaniv softsimu mijam
  • The Impact of Structural Genomics: Expectations and Outcomes
    Science, Vol. 311, No. 5759. (20 January 2006), pp. 347-351.
    by John-Marc Chandonia, Steven E Brenner
    posted to a_z_peripheral by penka on 2007-11-01 08:16:24 as ** along with 9 people and 2 groups tjimenez bicko balajis marcius tny anwazo dgront insectopalo selrac BioinfoCIPF SGU-CIPF
  • Site interdependence attributed to tertiary structure in amino acid sequence evolution
    Gene, Vol. 347, No. 2. (14 March 2005), pp. 207-217.
    by Nicolas Rodrigue, Nicolas Lartillot, David Bryant, Herve Philippe
    posted to a_tertiary_evolution by penka on 2007-11-01 08:14:01 as ** along with 1 person redelings
  • Assessing Site-Interdependent Phylogenetic Models of Sequence Evolution
    Mol Biol Evol, Vol. 23, No. 9. (1 September 2006), pp. 1762-1775.
    by Nicolas Rodrigue, Herve Philippe, Nicolas Lartillot
    posted to a_tertiary_evolution by penka on 2007-11-01 08:13:40 as ** along with 2 people redelings tale
  • Protein Evolution with Dependence Among Codons Due to Tertiary Structure
    Mol Biol Evol, Vol. 20, No. 10. (1 October 2003), pp. 1692-1704.
    by Douglas M Robinson, David T Jones, Hirohisa Kishino, Nick Goldman, Jeffrey L Thorne
    posted to a_tertiary_evolution by penka on 2007-11-01 08:12:49 as ** along with 2 people redelings tale
  • Protein stability promotes evolvability
    PNAS, Vol. 103, No. 15. (11 April 2006), pp. 5869-5874.
    by Jesse D Bloom, Sy T Labthavikul, Christopher R Otey, Frances H Arnold
    posted to a_z_peripheral by penka on 2007-11-01 08:10:56 as ** along with 10 people and 2 groups rklancer Retchless lna Einat cmm redelings BioNica Cristiano wilbur cdeane structural_bioinformatics FAB-lab
  • Recoverable one-dimensional encoding of protein three-dimensional structures.
    Bioinformatics (18 February 2005)
    by Akira R R Kinjo, Ken Nishikawa
    posted to a_z_peripheral by penka on 2007-11-01 08:08:18 as ** along with 4 people and 2 groups karbak ana barry mtw structural_bioinformatics Bioinformatics
  • EVA: Evaluation of protein structure prediction servers.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3311-3315.
    by IY Koh, VA Eyrich, MA Marti-Renom, D Przybylski, MS Madhusudhan, N Eswar, O Graña, F Pazos, A Valencia, A Sali, B Rost
    posted to a_software a_top by penka on 2007-11-01 08:07:01 as ** along with 2 people and 2 groups marcius dgront BioinfoCIPF SGU-CIPF
  • Protein structure modeling for structural genomics.
    Nat Struct Biol, Vol. 7 Suppl (November 2000), pp. 986-990.
    by R Sánchez, U Pieper, F Melo, N Eswar, MA Martí-Renom, MS Madhusudhan, N Mirković, A Sali
    posted to a_z_peripheral by penka on 2007-11-01 08:05:21 as ** along with 2 people and 2 groups marcius dgront BioinfoCIPF SGU-CIPF
  • RNA structure: experimental analysis.
    Curr Opin Microbiol (24 May 2007)
    by Brice Felden
    posted to a_goodinfo by penka on 2007-11-01 08:03:19 as ** along with 3 people and 2 groups marcius emidio_capriotti debatebob BioinfoCIPF SGU-CIPF
  • On the relationship between sequence and structure similarities in proteomics
    Bioinformatics, Vol. 23, No. 6. (15 March 2007), pp. 717-723.
    by K Evgeny
    posted to a_rna_evolution a_top by penka on 2007-11-01 08:01:42 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Quantifying the Impact of Protein Tertiary Structure on Molecular Evolution
    Mol Biol Evol (23 May 2007), msm097.
    by Sang C Choi, Asger Hobolth, Douglas M Robinson, Hirohisa Kishino, Jeffrey L Thorne
    posted to a_tertiary_evolution by penka on 2007-11-01 07:58:40 as ** along with 1 person zwang
  • Three distinct modes of intron dynamics in the evolution of eukaryotes.
    Genome Res (10 May 2007)
    by Liran Carmel, Yuri I I Wolf, Igor B B Rogozin, Eugene V V Koonin
    posted to introns1 by penka on 2007-11-01 07:57:56 as ** along with 6 people and 3 groups dchughes djkt jwestbrook lilou cabbagezs seitentaisei G4ID King_Lab Genetics-of-Gambling
  • RADAR: a web server for RNA data analysis and research.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007)
    by M Khaladkar, V Bellofatto, JT Wang, B Tian, BA Shapiro
    posted to a_software by penka on 2007-11-01 07:55:45 as ** along with 2 people austin jyuh
  • A practical guide to the art of RNA gene prediction
    Brief Bioinform (4 May 2007), bbm011.
    by Irmtraud M Meyer
    posted to a_goodinfo by penka on 2007-11-01 07:51:41 as ** along with 4 people xingxu wenhan GustavoLacerda xili03
  • RNA Sequence Evolution With Secondary Structure Constraints: Comparison of Substitution Rate Models Using Maximum-Likelihood Methods
    Genetics, Vol. 157, No. 1. (1 January 2001), pp. 399-411.
    by Nicholas J Savill, David C Hoyle, Paul G Higgs
    posted to a_rna_evolution by penka on 2007-11-01 07:50:59 as ** along with 3 people and 4 groups marcius condon i000 beta BioinfoCIPF SGU-CIPF YY1
  • Selection Intensity Against Deleterious Mutations in RNA Secondary Structures and Rate of Compensatory Nucleotide Substitutions
    Genetics, Vol. 159, No. 1. (1 September 2001), pp. 389-399.
    by Hideki Innan, Wolfgang Stephan
    posted to a_rna_evolution by penka on 2007-11-01 07:49:39 as **
  • Compensatory evolution of a precursor messenger RNA secondary structure in the Drosophila melanogaster Adh gene
    Proceedings of the National Academy of Sciences, Vol. 100, No. 20. (30 September 2003), pp. 11499-11504.
    by Ying Chen, Wolfgang Stephan
    posted to a_12dros by penka on 2007-11-01 07:48:47 as **
  • Phylogenetic estimation of context-dependent substitution rates by maximum likelihood.
    Mol Biol Evol, Vol. 21, No. 3. (March 2004), pp. 468-488.
    by A Siepel, D Haussler
    posted to a_rna_evolution by penka on 2007-11-01 07:47:38 as ** along with 4 people mdimmic djkt tale uwe
  • Natural selection is not required to explain universal compositional patterns in rRNA secondary structure categories.
    RNA, Vol. 12, No. 1. (January 2006), pp. 1-14.
    by S Smit, M Yarus, R Knight
    posted to a_rna_evolution a_top by penka on 2007-11-01 07:43:21 as ** along with 2 people and 1 group i000 debatebob YY1
  • Evolutionary Analyses of DNA Sequences Subject to Constraints on Secondary Structure
    Genetics, Vol. 139, No. 3. (1 March 1995), pp. 1429-1439.
    by SV Muse
    posted to a_rna_evolution by penka on 2007-11-01 07:40:54 as **
  • Evolutionary rates vary among rRNA structural elements
    Nucl. Acids Res., Vol. 35, No. 10. (11 May 2007), pp. 3339-3354.
    by S Smit, J Widmann, R Knight
    posted to a_rna_structure a_top by penka on 2007-11-01 07:08:45 as ** along with 5 people and 3 groups marcius eckart_bindewald balicea i000 cjeans BioinfoCIPF SGU-CIPF YY1
  • Deleterious SNP prediction: be mindful of your training data!
    Bioinformatics, Vol. 23, No. 6. (15 March 2007), pp. 664-672.
    by Care, A Matthew, Needham, J Chris, Bulpitt, J Andrew, Westhead, R David
    posted to a_snp by penka on 2007-11-01 07:01:53 as ** along with 2 people and 2 groups marcius Yumyai BioinfoCIPF SGU-CIPF
  • RNAs everywhere: genome-wide annotation of structured RNAs.
    J Exp Zoolog B Mol Dev Evol (14 December 2006)
    by Rolf Backofen, Stephan H H Bernhart, Christoph Flamm, Claudia Fried, Guido Fritzsch, Jörg Hackermüller, Jana Hertel, Ivo L L Hofacker, Kristin Missal, Axel Mosig, Sonja J J Prohaska, Dominic Rose, Peter F F Stadler, Andrea Tanzer, Stefan Washietl, Sebastian Will
    posted to a_z_peripheral by penka on 2007-11-01 06:59:54 as ** along with 11 people and 5 groups jfr bala marcius eckart_bindewald tardigrade andersbj cdawson ilh raylim jayster4 maralena microRNA BioinfoCIPF SGU-CIPF DictyosteliumGroup GIG
  • A comprehensive comparison of comparative RNA structure prediction approaches.
    BMC Bioinformatics, Vol. 5, No. 1. (30 September 2004)
    by PP Gardner, R Giegerich
    posted to a_rna_structure_prediction_check a_software by penka on 2007-11-01 06:50:35 as ** along with 7 people and 3 groups evaf austin marcius andersbj arcticrasta Hosna Carnegie microRNA BioinfoCIPF SGU-CIPF
  • Revolutions in RNA Secondary Structure Prediction
    Journal of Molecular Biology, Vol. 359, No. 3. (9 June 2006), pp. 526-532.
    by David H Mathews
    posted to a_goodinfo a_rna_structure_prediction_check by penka on 2007-11-01 06:48:10 as ** along with 8 people and 2 groups winterschlaefer marcius arcticrasta Eonwe cthachuk emidio_capriotti physics maralena BioinfoCIPF SGU-CIPF
  • CONTRAfold: RNA secondary structure prediction without physics-based models.
    Bioinformatics, Vol. 22, No. 14. (15 July 2006)
    by CB Do, DA Woods, S Batzoglou
    posted to a_rna_structure_prediction_check a_top by penka on 2007-11-01 06:47:01 as ** along with 5 people and 3 groups balajis marcius tardigrade condon acarbo beta BioinfoCIPF SGU-CIPF
  • RNA secondary structure: physical and computational aspects.
    Q Rev Biophys, Vol. 33, No. 3. (August 2000), pp. 199-253.
    by PG Higgs
    posted to a_goodinfo a_rna_structure_prediction_check a_top by penka on 2007-11-01 06:43:50 as ** along with 2 people and 2 groups marcius arcticrasta BioinfoCIPF SGU-CIPF
  • Statistical and Bayesian approaches to RNA secondary structure prediction.
    RNA, Vol. 12, No. 3. (March 2006), pp. 323-331.
    by Y Ding
    posted to a_rna_structure_prediction_check by penka on 2007-11-01 06:37:25 as ** along with 6 people and 3 groups marcius arcticrasta condon Hosna physics Kiarostami beta BioinfoCIPF SGU-CIPF
  • Calculating nucleic acid secondary structure.
    Curr Opin Struct Biol, Vol. 10, No. 3. (June 2000), pp. 303-310.
    by M Zuker
    posted to a_rna_structure_prediction_check by penka on 2007-11-01 06:36:28 as ** along with 2 people and 2 groups marcius arcticrasta BioinfoCIPF SGU-CIPF
  • Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features
    Biopolymers, Vol. 22, No. 12. (December 1983), pp. 2577-2637.
    by W Kabsch, C Sander
    posted to a_goodinfo a_rna_structure_prediction_check by penka on 2007-11-01 06:27:31 as ** along with 13 people kaarsinogen lna chad_davis wouterboomsma ffranca dgront choonpeng leelarcombe rabio gisle medic0747 martainn chgjb
  • Prediction in 1D: secondary structure, membrane helices, and accessibility.
    Methods Biochem Anal, Vol. 44 (2003), pp. 559-587.
    by B Rost
    posted to a_rna_structure_prediction_check a_top by penka on 2007-11-01 06:22:04 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • RNAshapes: an integrated RNA analysis package based on abstract shapes
    Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 500-503.
    by Peter Steffen, Bjorn Vosharp, Marc Rehmsmeier, Jens Reeder, Robert Giegerich
    posted to a_rna_structure_prediction_check by penka on 2007-11-01 06:15:36 as ** along with 2 people and 2 groups marcius Hosna BioinfoCIPF SGU-CIPF
  • Structural analysis of aligned RNAs
    Nucleic Acids Research, Vol. 34, No. 19. (November 2006), pp. 5471-5481.
    by Vosharp, Bjorn
    posted to a_rna_structure_prediction_check by penka on 2007-11-01 06:13:34 as **
  • The evolution of gene regulation by transcription factors and microRNAs
    Nat Rev Genet, Vol. 8, No. 2. (February 2007), pp. 93-103.
    by Kevin Chen, Nikolaus Rajewsky
    posted to z_gene_regulation by penka on 2007-01-23 22:47:41 as ** along with 17 people and 4 groups aprasad jfr indigoviolet tardigrade andersbj dchughes emilyhare cdawson aswin plofje dbikard joepickrell Garamonfok EeHawk3 jayster4 dandaman maralena EisenLab microRNA Nie GIG
    • Note: You may cite this page as: http://www.citeulike.org/user/penka

    Result page: 1 2 3 4 5 Next RIS BibTeX RSS
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.