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penka's a_bio113paper [31 articles]

Recent papers added to penka's library classified by the tag a_bio113paper. You can also see everyone's a_bio113paper.
  • Regulatory evolution across the protein interaction network.
    Nat Genet, Vol. 36, No. 10. (October 2004), pp. 1059-1060.
    by B Lemos, CD Meiklejohn, DL Hartl
    posted to a_bio113paper by penka on 2006-03-15 13:26:59 as * along with 1 group Nie
  • Molecular evolution in large genetic networks: does connectivity equal constraint?
    J Mol Evol, Vol. 58, No. 2. (February 2004), pp. 203-211.
    by MW Hahn, GC Conant, A Wagner
    posted to a_bio113paper by penka on 2006-03-15 13:23:23 as * along with 1 person and 1 group cjeans Nie
  • Inverse Relationship Between Evolutionary Rate and Age of Mammalian Genes
    Molecular Biology and Evolution, Vol. 22, No. 3. (March 2005), pp. 598-606.
    by Mar M Alba, Jose Castresana
    posted to a_bio113paper by penka on 2006-03-15 12:33:03 as ** along with 1 person and 1 group operon Nie
  • Rapid evolution of male-biased gene expression in Drosophila
    PNAS, Vol. 100, No. 17. (19 August 2003), pp. 9894-9899.
    by Colin D Meiklejohn, John Parsch, Jose M Ranz, Daniel L Hartl
    posted to a_bio113paper by penka on 2006-03-15 12:12:26 as ** along with 2 people and 1 group RMGraze filmsternchen Nie
  • Rate of protein evolution versus fitness effect of gene deletion.
    Mol Biol Evol, Vol. 20, No. 5. (May 2003), pp. 772-774.
    by J Yang, Z Gu, WH Li
    posted to a_bio113paper by penka on 2006-03-14 03:31:34 as ** along with 1 person and 1 group bjorns Nie
  • Functional genomic analysis of the rates of protein evolution.
    Proc Natl Acad Sci U S A, Vol. 102, No. 15. (12 April 2005), pp. 5483-5488.
    by DP Wall, AE Hirsh, HB Fraser, J Kumm, G Giaever, MB Eisen, MW Feldman
    posted to a_bio113paper by penka on 2006-03-14 03:29:14 as read along with 5 people and 1 group bjorns balajis opheliav RamuAnandakrishnan michaelbarton Nie
  • No simple dependence between protein evolution rate and the number of protein-protein interactions: only the most prolific interactors tend to evolve slowly.
    BMC Evol Biol, Vol. 3 (6 January 2003)
    by IK Jordan, YI Wolf, EV Koonin
    posted to a_bio113paper by penka on 2006-03-14 03:12:43 as ** along with 1 person and 1 group bjorns Nie
  • MISSENSE MEANDERINGS IN SEQUENCE SPACE: A BIOPHYSICAL VIEW OF PROTEIN EVOLUTION
    Nat Rev Genet, Vol. 6, No. 9. (2005), pp. 678-687.
    by Mark A Depristo, Daniel M Weinreich, Daniel L Hartl
    posted to a_bio113paper by penka on 2006-03-13 09:29:30 as ***** along with 2 people and 1 group mingzhi phoenixzxl Nie
  • The Effect of Multifunctionality on the Rate of Evolution in Yeast
    Mol Biol Evol, Vol. 23, No. 4. (1 April 2006), pp. 721-722.
    by Marcel Salathe, Martin Ackermann, Sebastian Bonhoeffer
    posted to a_bio113paper by penka on 2006-03-13 03:39:15 as ***** along with 1 person and 2 groups stevanspringer Nie FAB-lab
  • Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome.
    Genetics, Vol. 168, No. 1. (September 2004), pp. 373-381.
    by S Subramanian, S Kumar
    posted to a_bio113paper by penka on 2006-03-08 12:27:11 as ** along with 1 person and 1 group skumagai Nie
  • Highly expressed genes in yeast evolve slowly.
    Genetics, Vol. 158, No. 2. (June 2001), pp. 927-931.
    by C Pál, B Papp, LD Hurst
    posted to a_bio113paper by penka on 2006-02-24 10:06:09 as ** along with 4 people and 1 group bjorns lewbin balicea skumagai Nie
  • Gene essentiality and the topology of protein interaction networks.
    Proc Biol Sci, Vol. 272, No. 1573. (22 August 2005), pp. 1721-1725.
    by S Coulomb, M Bauer, D Bernard, MC Marsolier-Kergoat
    posted to a_bio113paper by penka on 2006-02-22 09:27:39 as **** along with 1 person and 1 group Takayuki Nie
  • Determinants of Adaptive Evolution at the Molecular Level: the Extended Complexity Hypothesis
    Molecular Biology and Evolution, Vol. 22, No. 2., 200.
    by Stephane Aris-Brosou
    posted to a_bio113paper by penka on 2006-02-22 08:59:18 as **** along with 1 person and 1 group hdopazo Nie
  • Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes in Bacteria
    Genome Res., Vol. 12, No. 6. (1 June 2002), pp. 962-968.
    by King I Jordan, Igor B Rogozin, Yuri I Wolf, Eugene V Koonin
    posted to a_bio113paper by penka on 2006-02-22 08:42:31 as **** along with 4 people and 1 group bjorns BarrosH ankur_iitg tfogal Nie
  • A simple hierarchical approach to modeling distributions of substitution rates.
    Mol Biol Evol, Vol. 22, No. 2. (February 2005), pp. 223-234.
    by SL Pond, SD Frost
    posted to a_bio113paper by penka on 2006-02-22 06:46:44 as **** along with 1 person and 1 group bjorns Nie
  • Why highly expressed proteins evolve slowly.
    Proc Natl Acad Sci U S A (21 September 2005)
    by D Allan A Drummond, Jesse D D Bloom, Christoph Adami, Claus O O Wilke, Frances H H Arnold
    posted to a_bio113paper by penka on 2006-02-22 06:40:50 as ** along with 14 people and 5 groups rklancer stevanspringer bjorns imouthesmp aprasad dayjm Einat marcius xwbcn balabu malcook balicea RamuAnandakrishnan wilbur structural_bioinformatics Nie FAB-lab BioinfoCIPF SGU-CIPF
  • Evidence of functional selection pressure for alternative splicing events that accelerate evolution of protein subsequences.
    Proc Natl Acad Sci U S A, Vol. 102, No. 38. (20 September 2005), pp. 13526-13531.
    by Y Xing, C Lee
    posted to a_bio113paper by penka on 2006-02-22 06:37:09 as **** along with 3 people and 3 groups aprasad radek bsmagic Bioinformatics Nie bioinplant
  • A highly unexpected strong correlation between fixation probability of nonsynonymous mutations and mutation rate
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Gerald J Wyckoff, Christine M Malcom, Eric J Vallender, Bruce T Lahn
    posted to a_bio113paper by penka on 2006-02-22 06:33:37 as ***** along with 6 people and 1 group bjorns aprasad JAShapiro balajis shoshin bpcusack Nie
  • Size of the protein-coding genome and rate of molecular evolution.
    J Hum Genet, Vol. 50, No. 5. (2005), pp. 217-229.
    by ZA Rajic, GM Jankovic, A Vidovic, NM Milic, D Skoric, M Pavlovic, V Lazarevic
    posted to a_bio113paper by penka on 2006-02-22 04:27:59 as ** along with 1 person and 1 group aprasad Nie
  • Converging on a general model of protein evolution.
    Trends Biotechnol, Vol. 23, No. 10. (October 2005), pp. 485-487.
    by JT Herbeck, DP Wall
    posted to a_bio113paper by penka on 2006-02-22 03:46:19 as *** along with 2 people and 1 group bjorns i41m Nie
  • Apparent dependence of protein evolutionary rate on number of interactions is linked to biases in protein-protein interactions data sets.
    BMC Evol Biol, Vol. 3 (2 October 2003)
    by JD Bloom, C Adami
    posted to a_bio113paper by penka on 2006-02-22 03:19:49 as ** along with 3 people and 1 group bjorns balajis rsantana Nie
  • Highly goes slowly
    J. Cell Biol., Vol. 171, No. 1. (10 October 2005), 10.
    by William A Wells
    posted to a_bio113paper by penka on 2006-02-15 09:25:50 as **** along with 1 group Nie
  • What determines the rate of sequence evolution?
    Curr Biol, Vol. 10, No. 11. (1 June 2000)
    by JF Brookfield
    posted to a_bio113paper by penka on 2006-02-08 07:38:30 as ** along with 1 group Nie
  • No simple dependence between protein evolution rate and the number of protein-protein interactions: only the most prolific interactors tend to evolve slowly
    posted to a_bio113paper by penka on 2006-02-08 07:36:45 as ** along with 1 group Nie
  • Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates.
    J Mol Biol, Vol. 260, No. 5. (2 August 1996), pp. 649-663.
    by H Dong, L Nilsson, CG Kurland
    posted to a_bio113paper by penka on 2006-02-08 07:30:40 as ** along with 1 person and 1 group bjorns Nie
  • The proteins of linked genes evolve at similar rates.
    Nature, Vol. 407, No. 6806. (19 October 2000), pp. 900-903.
    by EJ Williams, LD Hurst
    posted to a_bio113paper by penka on 2006-02-08 07:26:06 as ** along with 3 people and 2 groups stevanspringer bjorns bpcusack Nie FAB-lab
  • A Single Determinant Dominates the Rate of Yeast Protein Evolution.
    Mol Biol Evol (19 October 2005)
    by D Allan A Drummond, Alpan Raval, Claus O O Wilke
    posted to a_bio113paper by penka on 2006-02-08 07:23:19 as ***** along with 3 people and 1 group bjorns jpoyatos bicko Nie
  • Evolutionary genomics: Detecting selection needs comparative data
    Nature, Vol. 433, No. 7023. (20 January 2005), E6.
    by Rasmus Nielsen, Melissa J Hubisz
    posted to a_bio113paper by penka on 2006-02-03 08:27:54 as ** along with 1 person and 1 group tsackton Nie
  • Expression patterns of duplicate genes in the developing root in Arabidopsis thaliana.
    J Mol Evol, Vol. 60, No. 2. (February 2005), pp. 247-256.
    by AL Hughes, R Friedman
    posted to a_bio113paper by penka on 2006-02-03 08:22:31 as ** along with 1 group Nie
  • Selectionism and Neutralism in Molecular Evolution
    Mol Biol Evol, Vol. 22, No. 12. (1 December 2005), pp. 2318-2342.
    by Masatoshi Nei
    posted to a_bio113paper by penka on 2006-02-03 08:15:42 as **** along with 8 people and 2 groups stevanspringer operon akifumi BioNica timflutre ankur_iitg ArtemPankin druvus Nie FAB-lab
  • Gene expression during the life cycle of Drosophila melanogaster.
    Science, Vol. 297, No. 5590. (27 September 2002), pp. 2270-2275.
    by MN Arbeitman, EE Furlong, F Imam, E Johnson, BH Null, BS Baker, MA Krasnow, MP Scott, RW Davis, KP White
    posted to a_bio113paper by penka on 2006-01-14 22:33:52 as read along with 8 people and 2 groups bayesian RMGraze adepace eukfn wrowell meriley mimulus_99 caseybrown EisenLab Nie
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