phoenixzxl's data_integration [29 articles] Export Sort

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	High-resolution protein complexes from integrating genomic information with molecular simulation [My Copy] Proceedings of the National Academy of Sciences (17 December 2009) by Alexander Schug, Martin Weigt, JosÃ© N. Onuchic, Terence Hwa, Hendrik Szurmant posted to structure_aided structure simulation data_integration complex by phoenixzxl on 2009-12-18 06:03:45 as
	Bayesian Modeling of the Yeast SH3 Domain Interactome Predicts Spatiotemporal Dynamics of Endocytosis Proteins [My Copy] PLoS Biol, Vol. 7, No. 10. (20 October 2009), e1000218. by Raffi Tonikian, Xiaofeng Xin, Christopher P. Toret, et al.David Gfeller, Christiane Landgraf, Simona Panni, Serena Paoluzi, Luisa Castagnoli, Bridget Currell, Somasekar Seshagiri, Haiyuan Yu, Barbara Winsor, Marc Vidal, Mark B. Gerstein, Gary D. Bader, Rudolf Volkmer, Gianni Cesareni, David G. Drubin, Philip M. Kim, Sachdev S. Sidhu, Charles Boone posted to domain data_integration bayesian assembly by phoenixzxl on 2009-11-24 09:22:37 as along with 4 people kiekyon venancio pedrobeltrao cabbagesofdoom
	GExplore: a web server for integrated queries of protein domains, gene expression and mutant phenotypes [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 529. by Harald Hutter, Man P. Ng, Nansheng Chen posted to data_integration by phoenixzxl on 2009-11-17 01:09:12 as
	Harnessing gene expression to identify the genetic basis of drug resistance [My Copy] Molecular Systems Biology, Vol. 5 (13 October 2009) by Bo-Juen Chen, Helen C. Causton, Denesy Mancenido, Noel L. Goddard, Ethan O. Perlstein, Dana Pe'er posted to gene_expression disease_drug data_integration by phoenixzxl on 2009-10-15 02:46:02 as along with 4 people dswan ashishanand ptrobajo frohike
	Simultaneous inference of biological networks of multiple species from genome-wide data and evolutionary information: a semi-supervised approach [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2962-2968. by Hisashi Kashima, Yoshihiro Yamanishi, Tsuyoshi Kato, Masashi Sugiyama, Koji Tsuda posted to network_inference data_integration by phoenixzxl on 2009-09-25 15:59:34 as along with 3 people and 1 group jperkins roys druvus Orengo Group Journal Picks
	Global networks of functional coupling in eukaryotes from comprehensive data integration. [My Copy] Genome research, Vol. 19, No. 6. (25 June 2009), pp. 1107-1116. by Andrey Alexeyenko, Erik L. Sonnhammer posted to data_integration bayesian by phoenixzxl on 2009-09-21 07:44:11 as along with 8 people and 1 group icecrown ptrobajo kshameer rdiaz guhjy provero roys grahamc ParkinsonLab_at_MaRS
	Bioinformatics construction of the human cell surfaceome. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 39. (29 September 2009), pp. 16752-16757. by J. P. da Cunha, P. A. Galante, J. E. de Souza, et al.R. F. de Souza, P. M. Carvalho, D. T. Ohara, R. P. Moura, S. M. Oba-Shinja, S. K. Marie, W. A. Silva, R. O. Perez, B. Stransky, M. Pieprzyk, J. Moore, O. Caballero, J. Gama-Rodrigues, A. Habr-Gama, W. P. Kuo, A. J. Simpson, A. A. Camargo, Lloyd J. Old, S. J. de Souza posted to insight data_integration by phoenixzxl on 2009-09-16 02:56:39 as along with 3 people frohike tonamswish renatomilani
	A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae) [My Copy] Proceedings of the National Academy of Sciences of the United States of America In Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 14. (8 July 2003), pp. 8348-8353. by Olga G. Troyanskaya, Kara Dolinski, Art B. Owen, Russ B. Altman, David Botstein posted to prediction_function data_integration bayesian by phoenixzxl on 2009-09-15 04:17:37 as along with 22 people and 2 groups cjm ruichu bertelsen bresiva BioGeek serak dragonrez okarsligil lfriedl balajis eckart_bindewald eweaver luispedro opheliav wnpx nedwards Evangelia kallberg isimpson carlk srp33 frohike kdl Bioinformatics
	Identifying functional modules using expression profiles and confidence-scored protein interactions [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1158-1164. by Igor Ulitsky, Ron Shamir posted to data_integration gene_expression by phoenixzxl on 2009-04-17 02:23:20 as along with 4 people jfr yaredo saket tmmurali
	An integrated workflow for charting the human interaction proteome: insights into the PP2A system [My Copy] Mol Syst Biol, Vol. 5 (20 January 2009) by Timo Glatter, Alexander Wepf, Ruedi Aebersold, Matthias Gstaiger posted to complex data_integration network_ppi by phoenixzxl on 2009-03-09 06:05:12 as along with 2 people guhjy brianb
	Up-to-date catalogues of yeast protein complexes. [My Copy] Nucleic acids research, Vol. 37, No. 3. (1 February 2009), pp. 825-831. by Shuye Pu, Jessica Wong, Brian Turner, Emerson Cho, Shoshana J. Wodak posted to complex data data_integration by phoenixzxl on 2009-02-17 02:48:30 as along with 6 people aceol colmryan chasmand dakelley guhjy barriot
	Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 472. by Tao Xu, LinFang Du, Yan Zhou posted to data_integration gene_expression go prediction_function by phoenixzxl on 2008-11-06 04:23:44 as along with 7 people Borsti MarcoAlvarez sgoetz cgaugain saket kshameer barriot
	Bayesian learning of biological pathways on genomic data assimilation [My Copy] Bioinformatics (25 September 2008), btn483. by Ryo Yoshida, Masao Nagasaki, Rui Yamaguchi, Seiya Imoto, Satoru Miyano, Tomoyuki Higuchi posted to bayesian data_integration simulation by phoenixzxl on 2008-10-06 03:23:30 as along with 7 people jfr bertrandservin behindtherabbit guhjy dullhunk rdiaz renatomilani
	PRINCESS, a Protein Interaction Confidence Evaluation System with Multiple Data Sources [My Copy] Mol Cell Proteomics, Vol. 7, No. 6. (1 June 2008), pp. 1043-1052. by Dong Li, Wanlin Liu, Zhongyang Liu, et al.Jian Wang, Qijun Liu, Yunping Zhu, Fuchu He posted to bayesian data_integration by phoenixzxl on 2008-08-27 08:10:06 as along with 4 people carlk anf guhjy kluck
	Studying complex biological systems using multifactorial perturbation. [My Copy] Nat Rev Genet, Vol. 4, No. 2. (February 2003), pp. 145-151. by R. C. Jansen posted to data_integration review simulation by phoenixzxl on 2008-08-06 08:12:52 as along with 5 people snuppepuppan tmmurali jfr samal qfwills
	Modern computational approaches for analysing molecular genetic variation data [My Copy] Nat Rev Genet, Vol. 7, No. 10. (01 October 2006), pp. 759-770. by Paul Marjoram, Simon Tavare posted to data_integration review statistical tutorial by phoenixzxl on 2008-08-06 08:11:53 as along with 7 people debasis daforerog ilyashl psique guhjy jermth ramakris
	An integrated view of protein evolution [My Copy] Nature Reviews Genetics, Vol. 7, No. 5. (01 May 2006), pp. 337-348. by Csaba Pal, Balazs Papp, Martin J. Lercher posted to data_integration evolution review by phoenixzxl on 2008-08-06 08:00:42 as along with 14 people and 2 groups saunders mgomes chica michaelbarton gurprit_raunu gjuggler biomcgary icases dayjm tny entropy markbothwell BioNica mingzhi Bothwellab TNT
	Predicting Pathway Membership via Domain Signatures [My Copy] Bioinformatics (1 August 2008), btn403. by Holger Frohlich, Mark Fellmann, Holger Sultmann, Annemarie Poustka, Tim Beissbarth posted to data_integration machine_learning structure_aided svm by phoenixzxl on 2008-08-04 07:17:20 as along with 9 people le-gal druvus jameswasmuth kshameer jfr barriot ptrobajo mdstobbe guhjy
	Integrating protein-protein interactions and text mining for protein function prediction [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 8. (2008) by Samira Jaeger, Sylvain Gaudan, Ulf Leser, Dietrich R. Schuhmann posted to data_integration prediction_function by phoenixzxl on 2008-07-28 07:29:25 as along with 7 people and 1 group Effie raiyar farzanehs jiny bootsy reyez guhjy NaCTeM
	Integrating Diverse Data for Structure Determination of Macromolecular Assemblies [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (4 March 2008), pp. 443-477. by Frank Alber, Friedrich Förster, Dmitry Korkin, Maya Topf, Andrej Sali posted to complex data_integration review by phoenixzxl on 2008-07-16 02:08:04 as along with 5 people mijam kgutwin carlk noraziz chad_davis
	Assessing the limits of genomic data integration for predicting protein networks [My Copy] Genome Research, Vol. 15, No. 7. (July 2005), pp. 945-953. by Long J. Lu, Yu Xia, Alberto Paccanaro, Haiyuan Yu, Mark Gerstein posted to data_integration insight network_ppi by phoenixzxl on 2008-06-28 09:13:00 as along with 17 people and 3 groups ashishanand paccanarolab jaimie aelef okarsligil lfriedl balajis maryee opheliav wnpx mbeautru eukfn grahamc nedwards brianb iris_2001 carlk Paccanaro Lab kdl Bioinformatics
	Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Andrew J. Bordner, Andrey A. Gorin posted to complex data_integration prediction_interface by phoenixzxl on 2008-05-13 07:28:04 as along with 6 people somak bicko robfsouza chad_davis guhjy neils
	A map of human protein interactions derived from co-expression of human mRNAs and their orthologs [My Copy] Mol Syst Biol, Vol. 4 (15 April 2008) by Arun K. Ramani, Zhihua Li, G. Traver Hart, Mark W. Carlson, Daniel R. Boutz, Edward M. Marcotte posted to data_integration gene_expression prediction_ppi by phoenixzxl on 2008-04-16 02:12:11 as along with 11 people and 2 groups kgutwin windman83 druvus jeremymiller tmmurali biomcgary zwang giovanni grahamc ardalby ptrobajo KeatingJClub OPIG
	Exon level integration of proteomics and microarray data [My Copy] BMC Bioinformatics, Vol. 9 (25 February 2008), 118. by Danny A. Bitton, Michal J. Okoniewski, Yvonne Connolly, Crispin J. Miller posted to data_integration by phoenixzxl on 2008-04-11 03:50:06 as along with 7 people mdharsee GeeSharpMinor jo_davies guhjy thomaskelder huali jfr
	Dynamic complex formation during the yeast cell cycle. [My Copy] Science (New York, N.Y.), Vol. 307, No. 5710. (4 February 2005), pp. 724-727. by U. de Lichtenberg, L. J. Jensen, S. Brunak, P. Bork posted to complex data_integration gene_expression network_dynamic network_ppi peruse by phoenixzxl on 2008-04-08 04:45:53 as along with 12 people and 1 group chica mdimmic chad_davis balajis wnpx koller massivemayhem cjeans arne larsjuhljensen carlk gjuggler dIEMoSIRIS
	Network modeling links breast cancer susceptibility and centrosome dysfunction [My Copy] Nature Genetics, Vol. 39, No. 11. (07 October 2007), pp. 1338-1349. by Miguel A. Pujana, Jing-Dong J. Han, Lea M. Starita, et al.Kristen N. Stevens, Muneesh Tewari, Jin S. Ahn, Gad Rennert, Victor Moreno, Tomas Kirchhoff, Bert Gold, Volker Assmann, Wael M. ElShamy, Jean-Francois Rual, Douglas Levine, Laura S. Rozek, Rebecca S. Gelman, Kristin C. Gunsalus, Roger A. Greenberg, Bijan Sobhian, Nicolas Bertin, Kavitha Venkatesan, Nono Ayivi-Guedehoussou, Xavier Sole, Pilar Hernandez, Conxi Lazaro, Katherine L. Nathanson, Barbara L. Weber, Michael E. Cusick, David E. Hill, Kenneth Offit, David M. Livingston, Stephen B. Gruber, Jeffrey D. Parvin, Marc Vidal posted to data_integration network_ppi peruse by phoenixzxl on 2008-04-07 09:49:30 as along with 12 people and 1 group frohike tonamswish ajbattle jaimie koller jmuhlich jfr ealloza cjeans nedwards jdiezperezj chrisamiller BioinfoCIPF
	Probabilistic model of the human protein-protein interaction network [My Copy] Nature Biotechnology, Vol. 23, No. 8., pp. 951-959. by Daniel R. Rhodes, Scott A. Tomlins, Sooryanarayana Varambally, et al.Vasudeva Mahavisno, Terrence Barrette, Shanker Kalyana-Sundaram, Debashis Ghosh, Akhilesh Pandey, Arul M. Chinnaiyan posted to data_integration network_ppi by phoenixzxl on 2008-04-07 09:42:16 as along with 18 people and 2 groups snow_dragon Borelli tonamswish ilyashl aelef cswinburne kentsis lfriedl balajis opheliav wnpx nickluscombe eukfn iris_2001 antonkratz mingzhi maralena penpen926 kdl EBI-regulation
	A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data [My Copy] Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453. by Ronald Jansen, Haiyuan Yu, Dov Greenbaum, et al.Yuval Kluger, Nevan J. Krogan, Sambath Chung, Andrew Emili, Michael Snyder, Jack F. Greenblatt, Mark Gerstein posted to bayesian data_integration peruse prediction_ppi by phoenixzxl on 2008-03-17 12:28:41 as along with 24 people and 2 groups cjm rsaito cerca hagechouchin443 aelef Robinder lfriedl balajis opheliav yuval wnpx nickluscombe ruvido raiyar massivemayhem kdang dbgrant nedwards karfunkel Evangelia shung penpen926 carlk frohike kdl EBI-regulation
	Integrative approach for computationally inferring protein domain interactions. [My Copy] Bioinformatics, Vol. 19, No. 8. (22 May 2003), pp. 923-929. by S. K. Ng, Z. Zhang, S. H. Tan posted to data_integration prediction_ddi by phoenixzxl on 2008-03-14 07:35:10 as along with 4 people semin dyermd antonkratz carlk

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