pinney's library 35 articles Export

	Evolution of biomolecular networks \|[mdash]\| lessons from metabolic and protein interactions [My Copy] Nat Rev Mol Cell Biol, Vol. 10, No. 11. (01 November 2009), pp. 791-803. by Takuji Yamada, Peer Bork posted to protein_interaction network metabolic evolution by pinney on 2009-10-27 12:47:49 as along with 6 people venancio biomcgary colmryan nzm pedrobeltrao tmmurali
	Genome-scale gene/reaction essentiality and synthetic lethality analysis [My Copy] Molecular Systems Biology, Vol. 5 (18 August 2009) by Patrick F. Suthers, Alireza Zomorrodi, Costas D. Maranas posted to systems synthetic_lethality reconstruction phenotype metabolic by pinney on 2009-08-19 12:07:49 as along with 2 people and 1 group robertrentzsch biomcgary Orengo Group Journal Picks
	Software by any name [My Copy] Nature Methods, Vol. 6, No. 8. (01 August 2009), pp. 547-548. posted to best_practice software_development by pinney on 2009-08-03 12:34:36 as along with 4 people seb1 druvus dswan renatomilani
	A unified and universal explanation for Lévy laws and 1/f noises [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 30. (28 July 2009), pp. 12251-12254. by Iddo Eliazar, Joseph Klafter posted to power_law scale_free statistical_physics by pinney on 2009-07-30 17:14:37 as along with 4 people vvoorr gi0rgi0ne deanmalmgren jjray
	Recovering time-varying networks of dependencies in social and biological studies [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 29. (21 July 2009), pp. 11878-11883. by Amr Ahmed, Eric P. Xing posted to dynamic_networks network reconstruction social by pinney on 2009-07-22 16:00:04 as along with 6 people rdiaz Borelli maximzhao zwang friendpine tmmurali
	What are genes "for" or where are traits "from"? What is the question? [My Copy] BioEssays, Vol. 31, No. 2. (2009), pp. 198-208. by Anne V. Buchanan, Samuel Sholtis, Joan Richtsmeier, Kenneth M. Weiss posted to complexity evolution network by pinney on 2009-06-05 14:40:33 as along with 2 people fisherp psique
	A general computational method for robustness analysis with applications to synthetic gene networks. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. i169-178. by Aurélien Rizk, Gregory Batt, François Fages, Sylvain Soliman posted to robustness by pinney on 2009-06-01 15:24:04 as along with 2 people abhishek_tiwari colmryan
	Stochasticity in Protein Levels Drives Colinearity of Gene Order in Metabolic Operons of Escherichia coli [My Copy] PLoS Biol, Vol. 7, No. 5. (26 May 2009), e1000115. by Károly Kovács, Laurence D. Hurst, Balázs Papp posted to gene_order metabolic operon stochasticity by pinney on 2009-05-27 16:13:42 as along with 6 people elifsu emptyhb trfield dipenps jjray kentsis
	Human language as a culturally transmitted replicator [My Copy] Nature Reviews Genetics, Vol. 10, No. 6. (01 June 2009), pp. 405-415. by Mark Pagel posted to evolution language phylogenetics by pinney on 2009-05-20 13:15:51 as along with 6 people djohnson scmelton phoenixzxl tmheino sameersoi shikin
	How does Europe Make Its Mind Up? Connections, cliques, and compatibility between countries in the Eurovision Song Contest [My Copy] Physica A: Statistical Mechanics and its Applications, Vol. 360, No. 2. (01 February 2006), pp. 576-598. by D. Fenn, O. Suleman, J. Efstathiou, N. Johnson posted to eurovision network by pinney on 2009-05-20 13:13:22 as
	Dynamic computation of network statistics via updating schema. [My Copy] Physical review. E, Statistical, nonlinear, and soft matter physics, Vol. 79, No. 3 Pt 2. (March 2009) by J. Sun, J. P. Bagrow, E. M. Bollt, J. D. Skufca posted to network_statistics by pinney on 2009-04-28 12:07:05 as
	Extracting the multiscale backbone of complex weighted networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6483-6488. by M. Ãngeles Serrano, MariÃ¡n BoguÃ±Ã¡, Alessandro Vespignani posted to network weighted_network by pinney on 2009-04-23 17:51:26 as along with 9 people and 1 group rdiaz tomt21 edws rsantana trfield deanmalmgren sobolevnrm kevinchannon kshundyak baker-group
	Major dimensions in food-web structure properties [My Copy] Ecology, Vol. 90, No. 1. (January 2009), pp. 278-282. by Jan E. Vermaat, Jennifer A. Dunne, Alison J. Gilbert posted to food_web network by pinney on 2009-03-23 11:52:45 as
	Simultaneous Bayesian gene tree reconstruction and reconciliation analysis [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 14. (7 April 2009), pp. 5714-5719. by Ãrjan Ãkerborg, Bengt Sennblad, Lars Arvestad, Jens Lagergren posted to bayes reconciliation tree by pinney on 2009-03-23 10:49:11 as along with 2 people and 1 group djkt mhamada iSEEM
	Why are (the best) women so good at chess? Participation rates and gender differences in intellectual domains [My Copy] Proceedings of the Royal Society B: Biological Sciences by Merim Bilalić, Kieran Smallbone, Peter Mcleod, Fernand Gobet posted to no-tag by pinney on 2009-03-19 15:09:05 as along with 1 person dullhunk
	Exploring the human genome with functional maps. [My Copy] Genome research, Vol. 19, No. 6. (1 June 2009), pp. 1093-1106. by Curtis Huttenhower, Erin M. Haley, Matthew A. Hibbs, et al.Vanessa Dumeaux, Daniel R. Barrett, Hilary A. Coller, Olga G. Troyanskaya posted to bayesian_inference data_integration by pinney on 2009-03-02 11:55:15 as along with 9 people jfr ptrobajo daforerog fenghezi shikin idoerg guhjy grahamc pkonings
	Efficient, sparse biological network determination [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009) by Elias August, Antonis Papachristodoulou posted to network reconstruction by pinney on 2009-02-25 12:59:26 as along with 3 people agomez trfield behindtherabbit
	A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology [My Copy] Nat Biotech, Vol. 26, No. 10. (09 October 2008), pp. 1155-1160. by Markus J. Herrgard, Neil Swainston, Paul Dobson, et al.Warwick B. Dunn, K. Yalcin Arga, Mikko Arvas, Nils Buthgen, Simon Borger, Roeland Costenoble, Matthias Heinemann, Michael Hucka, Nicolas Le Novere, Peter Li, Wolfram Liebermeister, Monica L. Mo, Ana P. Oliveira, Dina Petranovic, Stephen Pettifer, Evangelos Simeonidis, Kieran Smallbone, Irena Spasie, Dieter Weichart, Roger Brent, David S. Broomhead, Hans V. Westerhoff, Betul Kurdar, Merja Penttila, Edda Klipp, Bernhard O. Palsson, Uwe Sauer, Stephen G. Oliver, Pedro Mendes, Jens Nielsen, Douglas B. Kell posted to metabolic network reconstruction yeast by pinney on 2009-02-19 12:53:38 as along with 22 people and 2 groups m_j pmendes windman83 jfr raiyar neilswainston irenas JeremyZucker chasmand schwartzjmc pauldobson alaninmcr allysonlister zwang guhjy dbk michaelbarton ptrobajo neils dullhunk pengchy tmmurali MetabolicModeling BergmanLab
	A survey of visualization tools for biological network analysis. [My Copy] BioData Mining, Vol. 1, 12. by Georgios A. Pavlopoulos, Anna-Lynn Wegener, Reinhard Schneider posted to data_formats network visualization by pinney on 2009-02-05 17:55:22 as along with 2 people guhjy pengchy
	Reconstruction of biochemical networks in microorganisms. [My Copy] Nature reviews. Microbiology (31 December 2008) by Adam M M. Feist, Markus J J. Herrgård, Ines Thiele, Jennie L L. Reed, Bernhard Ø O. Palsson posted to network reconstruction systems by pinney on 2009-02-05 12:34:33 as along with 10 people and 1 group coela roys rdiaz mycomodel tobitas michaelbarton friveroll behindtherabbit druvus dullhunk Bioinformatics
	How Protein Stability and New Functions Trade Off [My Copy] PLoS Comput Biol, Vol. 4, No. 2. (29 February 2008), e1000002. by Nobuhiko Tokuriki, Francois Stricher, Luis Serrano, Dan S. Tawfik posted to structure by pinney on 2009-01-29 16:10:44 as along with 4 people pablocarb GermanErlenkamp orr aalibes
	Questioning the Ubiquity of Neofunctionalization [My Copy] PLoS Comput Biol, Vol. 5, No. 1. (2 January 2009), e1000252. by Todd A. Gibson, Debra S. Goldberg posted to duplication neofunctionalization network ppi subfunctionalization by pinney on 2009-01-29 13:05:21 as along with 7 people winterschlaefer JustinCrocker VGreiff druvus cabbagesofdoom pansapiens djkt
	Turning a hobby into a job: How duplicated genes find new functions [My Copy] Nat Rev Genet, Vol. 9, No. 12. (01 December 2008), pp. 938-950. by Gavin C. Conant, Kenneth H. Wolfe posted to duplication neofunctionalization subfunctionalization by pinney on 2009-01-29 13:03:23 as along with 12 people and 3 groups biomcgary Annab clearbluespring ajaymalik ilyashl azazello gderwin Zephyrus bootsy strands dchughes pkonings Bioinformatics Roswell Cancer Crosstalk R.E.A.D
	Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae [My Copy] Nature, Vol. 428, No. 6983. (07 March 2004), pp. 617-624. by Manolis Kellis, Bruce W. Birren, Eric S. Lander posted to duplication yeast by pinney on 2009-01-29 13:01:23 as along with 12 people and 2 groups jdoconnell GustavoLacerda gjuggler clearbluespring azazello timflutre aramata evaf dchughes nirfriedman IbnBio ehud G4ID Genetics-of-Gambling
	Anatomy of data integration [My Copy] Journal of Biomedical Informatics, Vol. 40, No. 3. (June 2007), pp. 252-269. by Olga Brazhnik, John F. Jones posted to data_integration by pinney on 2008-09-10 10:39:57 as along with 5 people pharmdoc guhjy jandot Simplicity nicklynch
	The scale independence of evolution [My Copy] Evolution & Development, Vol. 2, No. 2. (2000), pp. 67-77. by Armand M. Leroi posted to evolution scale by pinney on 2008-05-22 13:43:35 as
	A novel series of compositionally biased substitution matrices for comparing Plasmodium proteins. [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Kevin Brick, Elisabetta Pizzi posted to plasmodium sequence by pinney on 2008-05-21 17:34:35 as along with 2 people Neeperando barriot
	Estimating the size of the solution space of metabolic networks [My Copy] BMC Bioinformatics, Vol. 9 (19 May 2008), 240. by Alfredo Braunstein, Roberto Mulet, Andrea Pagnani posted to metabolic systems by pinney on 2008-05-21 17:32:33 as along with 1 person guhjy
	Validation and discovery from computational biology models. [My Copy] Bio Systems (11 April 2008) by Mariam Kiran, Simon Coakley, Neil Walkinshaw, Phil McMinn, Mike Holcombe posted to discovery systems by pinney on 2008-05-21 17:31:48 as along with 1 person guhjy
	In Search of the Biological Significance of Modular Structures in Protein Networks [My Copy] PLoS Computational Biology, Vol. 3, No. 6. (1 June 2007), e107. by Zhi Wang, Jianzhi Zhang posted to modularity ppi by pinney on 2008-05-08 19:20:45 as along with 6 people and 1 group jfr grahamc massivemayhem cjeans zwang cabbagezs Bioinformatics
	Systems analysis of chaperone networks in the malarial parasite Plasmodium falciparum. [My Copy] PLoS Comput Biol, Vol. 3, No. 9. (14 September 2007), pp. 1701-1715. by S. R. Pavithra, R. Kumar, U. Tatu posted to plasmodium systems by pinney on 2008-05-08 19:20:08 as along with 3 people cmmorel cjeans zwang
	Hierarchical structure and the prediction of missing links in networks [My Copy] Nature, Vol. 453, No. 7191. (01 May 2008), pp. 98-101. by Aaron Clauset, Cristopher Moore, M. E. J. Newman posted to network by pinney on 2008-05-08 18:59:53 as along with 46 people ipark-kaist carlk gtgt15 saket wei_tang Kovanen diamantis cfelipesp orahcio rcrane kubyaddi pbull Ema jago cmor balicea kengg jjray soramame_0518 deanmalmgren briordan hryk tny AbnerCYH cactus tmmurali akshat bryanhughes gagliol margaritis guhjy craigwilson06 cmmorel eyliu markusd elsantosneto i-stevenson fbaroni nedwards apwesolowski Borelli ptrobajo dpf rds lfriedl sen_cheng
	GraphWeb: mining heterogeneous biological networks for gene modules with functional significance. [My Copy] Nucleic acids research (6 May 2008) by Jüri Reimand, Laur Tooming, Hedi Peterson, Priit Adler, Jaak Vilo posted to modularity by pinney on 2008-05-08 18:05:45 as along with 7 people gotgenes GustavoLacerda jfr guhjy maralena shigepong ptrobajo
	The evolution of modularity in bacterial metabolic networks [My Copy] Proceedings of the National Academy of Sciences (6 May 2008), 0712149105. by Anat Kreimer, Elhanan Borenstein, Uri Gophna, Eytan Ruppin posted to evolution modularity by pinney on 2008-05-08 18:03:57 as along with 13 people rouault ocs hryk qwermish deanmalmgren carlk jjray skato_toyaku mjoach tmmurali phoenixzxl roys saket
	Finding mesoscopic communities in sparse networks. [My Copy] Journal of statistical mechanics (Online), Vol. 9 (1 September 2006) by I Ispolatov, I Mazo, A Yuryev posted to clustering modularity by pinney on 2008-05-08 18:03:13 as

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network	12
evolution	5
metabolic	5
reconstruction	5
systems	5
modularity	4
duplication	3
data_integration	2
neofunctionalization	2
plasmodium	2
ppi	2
subfunctionalization	2
yeast	2
bayes	1
bayesian_inference	1
best_practice	1
clustering	1
complexity	1
data_formats	1
discovery	1
dynamic_networks	1
eurovision	1
food_web	1
gene_order	1
language	1
network_statistics	1
operon	1
phenotype	1
phylogenetics	1
power_law	1
protein_interaction	1
reconciliation	1
robustness	1
scale	1
scale_free	1
sequence	1
social	1
software_development	1
statistical_physics	1
stochasticity	1
structure	1
synthetic_lethality	1
tree	1
visualization	1
weighted_network	1

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