pkm's library 132 articles Export

	A wave of nascent transcription on activated human genes [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 43. (27 October 2009), pp. 18357-18361. by Youichiro Wada, Yoshihiro Ohta, Meng Xu, et al.Shuichi Tsutsumi, Takashi Minami, Kenji Inoue, Daisuke Komura, Jun'ichi Kitakami, Nobuhiko Oshida, Argyris Papantonis, Akashi Izumi, Mika Kobayashi, Hiroko Meguro, Yasuharu Kanki, Imari Mimura, Kazuki Yamamoto, Chikage Mataki, Takao Hamakubo, Katsuhiko Shirahige, Hiroyuki Aburatani, Hiroshi Kimura, Tatsuhiko Kodama, Peter R. Cook, Sigeo Ihara posted to transcription by pkm on 2009-11-19 16:03:53 as along with 4 people and 2 groups daed inesdesantiago gbloeb cvaldes CTCF Chromatin
	The physical state of water in bacterial spores [My Copy] Proceedings of the National Academy of Sciences (5 November 2009) by Erik P. Sunde, Peter Setlow, Lars Hederstedt, Bertil Halle posted to spores botulinum by pkm on 2009-11-12 09:46:25 as
	Towards a systems biology approach to understanding seed dormancy and germination [My Copy] Proceedings of the Royal Society B: Biological Sciences, Vol. 276, No. 1673. (22 October 2009), pp. 3561-3569. by Steven Penfield, John King posted to single-cell germination by pkm on 2009-11-06 11:50:12 as
	Experimental evolution of bet hedging [My Copy] Nature, Vol. 462, No. 7269. (05 November 2009), pp. 90-93. by Hubertus J. E. Beaumont, Jenna Gallie, Christian Kost, Gayle C. Ferguson, Paul B. Rainey posted to single-cell by pkm on 2009-11-06 09:52:18 as along with 6 people dbikard yyfwuhan Winzer megraw pedrobeltrao jjray
	Summing up the noise in gene networks. [My Copy] Nature, Vol. 427, No. 6973. (29 January 2004), pp. 415-418. by J. Paulsson posted to stochasticity single-cell by pkm on 2009-11-06 08:35:47 as along with 9 people jjray bayesian balabu jiyu mhucka timflutre margaritis marcio dylanwalker
	Real-time kinetics of gene activity in individual bacteria. [My Copy] Cell, Vol. 123, No. 6. (16 December 2005), pp. 1025-1036. by Ido Golding, Johan Paulsson, Scott M. Zawilski, Edward C. Cox posted to single-cell genetics by pkm on 2009-11-04 01:23:29 as along with 6 people yyfwuhan boko4ikameto jjray behindtherabbit balabu margaritis
	Modelling the bacterial growth/no growth interface [My Copy] Letters in Applied Microbiology, Vol. 20, No. 1. (1995), pp. 29-33. by D. A. Ratkowsky, T. Ross posted to shou by pkm on 2009-10-20 17:08:24 as
	Tightly Regulated and Heritable Division Control in Single Bacterial Cells☆ [My Copy] Biophysical Journal, Vol. 95, No. 4. (15 August 2008), pp. 2063-2072. by D. Siegalgaskins, S. Crosson posted to single-cell microfluidic lag by pkm on 2009-10-07 16:32:14 as along with 1 person dantimatter
	Induction of Competence Regulons as a General Response to Stress in Gram-Positive Bacteria [My Copy] Annual Review of Microbiology, Vol. 60, No. 1. (2006), pp. 451-475. by Jean P. Claverys, Marc Prudhomme, Bernard Martin posted to stochasticity single-cell by pkm on 2009-10-07 16:22:58 as
	Engineering stochasticity in gene expression [My Copy] Mol. BioSyst., Vol. 4, No. 7. (July 2008), pp. 754-761. by Jeffrey J. Tabor, Travis S. Bayer, Zachary B. Simpson, Matthew Levy, Andrew D. Ellington posted to stochasticity single-cell by pkm on 2009-10-07 15:23:30 as along with 3 people Vincent_Rouilly austin jjray
	Causal Protein-Signaling Networks Derived from Multiparameter Single-Cell Data [My Copy] Science, Vol. 308, No. 5721. (22 April 2005), pp. 523-529. by Karen Sachs, Omar Perez, Dana Pe'er, Douglas A. Lauffenburger, Garry P. Nolan posted to single-cell by pkm on 2009-10-06 15:05:28 as along with 23 people and 1 group phoenixzxl sameersoi abhishek_tiwari poirel roys frohike aviad_work czeller emptyhb kentsis kaarsinogen balajis rand_bayes ryang wnpx os252 j3xucite noano koller jhatrimatri cdppublications lp2 saman_vp CDP
	Modeling the temporal interplay of molecular signaling and gene expression by using dynamic nested effects models [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6447-6452. by Benedict Anchang, Mohammad J. Sadeh, Juby Jacob, et al.Achim Tresch, Marcel O. Vlad, Peter J. Oefner, Rainer Spang posted to single-cell by pkm on 2009-10-06 14:50:35 as along with 4 people abhishek_tiwari trfield deanmalmgren shikin
	Modelling the effect of sublethal injury on the distribution of the lag times of individual cells of Lactobacillus plantarum [My Copy] International Journal of Food Microbiology, Vol. 73, No. 2-3. (11 March 2002), pp. 207-212. by J. Smelt posted to lag by pkm on 2009-10-06 11:26:26 as
	Using movies to analyse gene circuit dynamics in single cells [My Copy] Nat Rev Micro, Vol. 7, No. 5. (01 May 2009), pp. 383-392. by James C. W. Locke, Michael B. Elowitz posted to single-cell by pkm on 2009-10-02 17:11:31 as along with 6 people ellarond boko4ikameto abhishek_tiwari roys stasaki dswan
	Microbial cell individuality and the underlying sources of heterogeneity [My Copy] Nat Rev Micro, Vol. 4, No. 8. (01 August 2006), pp. 577-587. by Simon V. Avery posted to single-cell by pkm on 2009-10-02 16:47:14 as along with 4 people jjray madhadron balabu aswin
	Stochasticity in gene expression: from theories to phenotypes [My Copy] Nat Rev Genet, Vol. 6, No. 6. (10 May 2005), pp. 451-464. by Mads Kaern, Timothy C. Elston, William J. Blake, James J. Collins posted to single-cell by pkm on 2009-10-02 16:20:43 as along with 8 people bertelsen boko4ikameto bcondon ccots wnpx tabu balabu timflutre
	Microfluidic devices for measuring gene network dynamics in single cells [My Copy] Nat Rev Genet, Vol. 10, No. 9. (11 August 2009), pp. 628-638. by Matthew R. Bennett, Jeff Hasty posted to single-cell by pkm on 2009-10-02 16:15:40 as along with 5 people abhishek_tiwari boko4ikameto megraw jbhiatt danmaclean
	Stochastic modelling for quantitative description of heterogeneous biological systems [My Copy] Nature Reviews Genetics, Vol. 10, No. 2. (01 February 2009), pp. 122-133. by Darren J. Wilkinson posted to single-cell by pkm on 2009-10-02 15:47:28 as along with 12 people and 1 group pjmaybank mhellmann vingron dah paulschlesinger jbhiatt guhjy tinatoni rdiaz Zephyrus xingxu misonneh Roswell Cancer Crosstalk
	Gene Regulation at the Single-Cell Level [My Copy] Science, Vol. 307, No. 5717. (25 March 2005), pp. 1962-1965. by Nitzan Rosenfeld, Jonathan W. Young, Uri Alon, Peter S. Swain, Michael B. Elowitz posted to single-cell by pkm on 2009-10-02 15:23:12 as along with 20 people dbikard ddcttrl Borelli boko4ikameto kshundyak jimeet rklancer snuppepuppan kentsis Toze bayesian balicea JKelly555 balabu comb mhucka timflutre margaritis csgillespie vladimirov
	A Stochastic Single-Molecule Event Triggers Phenotype Switching of a Bacterial Cell [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 442-446. by Paul J. Choi, Long Cai, Kirsten Frieda, X. Sunney Xie posted to single-cell by pkm on 2009-10-02 15:15:44 as along with 11 people and 1 group yyfwuhan balabu stasaki jbhiatt lflorez jonesn cactus alexknight margaritis jjray samjlord moernerlab
	Defining mechanisms that regulate RNA polymerase II transcription in vivo [My Copy] Nature, Vol. 461, No. 7261. (09 September 2009), pp. 186-192. by Nicholas J. Fuda, M. Behfar Ardehali, John T. Lis posted to single-cell by pkm on 2009-10-02 14:53:59 as along with 4 people fenghezi cmzmasek TRHvidsten inesdesantiago
	Nature, nurture, or chance: stochastic gene expression and its consequences. [My Copy] Cell, Vol. 135, No. 2. (17 October 2008), pp. 216-226. by Arjun Raj, Alexander van Oudenaarden posted to single-cell by pkm on 2009-10-02 14:25:37 as along with 12 people and 1 group ddcttrl Vincent_Rouilly iml burnettjc jbhiatt GustavoLacerda samgj erel10 Zephyrus ocs sg45653 jjray Roswell Cancer Crosstalk
	Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise. [My Copy] Nature, Vol. 441, No. 7095. (15 June 2006), pp. 840-846. by John R. Newman, Sina Ghaemmaghami, Jan Ihmels, et al.David K. Breslow, Matthew Noble, Joseph L. DeRisi, Jonathan S. Weissman posted to single-cell by pkm on 2009-10-02 14:14:41 as along with 14 people and 3 groups yyfwuhan bpcusack ogishima nzm ajeffs jfr emilyhare nirfriedman madhadron cmm balabu pau margaritis dylanwalker EisenLab FAB-lab RNAtransport
	Single-Cell and Population Lag Times as a Function of Cell Age [My Copy] Appl. Environ. Microbiol., Vol. 74, No. 8. (15 April 2008), pp. 2534-2536. by Carmen Pin, Jozsef Baranyi posted to lag by pkm on 2009-09-30 13:32:43 as
	Emerging foodborne pathogens [My Copy] International Journal of Food Microbiology, Vol. 78, No. 1-2. (15 September 2002), pp. 31-41. by R. Tauxe posted to shou by pkm on 2009-09-30 13:06:05 as
	Use of epidemiologic data to measure the impact of food safety control programs [My Copy] Food Control, Vol. 17, No. 10. (October 2006), pp. 825-837. by O. Internationalcommissiononmicr posted to shou by pkm on 2009-09-30 13:02:48 as
	Emerging foodborne diseases: an evolving public health challenge. [My Copy] Emerging infectious diseases, Vol. 3, No. 4. (c 1997), pp. 425-434. by R. V. Tauxe posted to shou by pkm on 2009-09-30 11:41:30 as
	Predictive microbiology: providing a knowledge-based framework for change management [My Copy] International Journal of Food Microbiology, Vol. 78, No. 1-2. (15 September 2002), pp. 133-153. by T. McMeekin posted to shou by pkm on 2009-09-30 09:33:22 as
	Predictive microbiology: towards the interface and beyond [My Copy] International Journal of Food Microbiology, Vol. 73, No. 2-3. (11 March 2002), pp. 395-407. by T. McMeekin posted to shou by pkm on 2009-09-30 09:31:32 as
	Bistability, epigenetics, and bet-hedging in bacteria. [My Copy] Annual review of microbiology, Vol. 62, No. 1. (2008), pp. 193-210. by Jan-Willem W. Veening, Wiep Klaas K. Smits, Oscar P. Kuipers posted to single-cell by pkm on 2009-09-29 16:54:41 as along with 5 people Winzer goksel jporternj jjray stk
	Individuality in Bacteria [My Copy] Annual Review of Genetics, Vol. 42, No. 1. (2008), pp. 253-268. by Carla J. Davidson, Michael G. Surette posted to single-cell by pkm on 2009-09-29 16:52:39 as along with 4 people sergiun cambray VGreiff druvus
	Heritable Stochastic Switching Revealed by Single-Cell Genealogy [My Copy] PLoS Biol, Vol. 5, No. 9. (4 September 2007), e239. by Benjamin B. Kaufmann, Qiong Yang, Jerome T. Mettetal, Alexander van Oudenaarden posted to single-cell by pkm on 2009-09-29 16:45:28 as along with 4 people and 1 group kvasznicza jjray dpollard madhadron EisenLab
	Non-genetic individuality: chance in the single cell [My Copy] Nature, Vol. 262, No. 5568. (05 August 1976), pp. 467-471. by John L. Spudich, D. E. Koshland posted to single-cell by pkm on 2009-09-28 15:28:30 as along with 2 people lesander vladimirov
	Linking Stochastic Dynamics to Population Distribution: An Analytical Framework of Gene Expression [My Copy] Physical Review Letters, Vol. 97, No. 16. (2006), 168302. by Nir Friedman, Long Cai, X. Sunney Xie posted to stochasticity single-cell genetics by pkm on 2009-09-25 14:33:21 as along with 2 people yyfwuhan ddcttrl
	Transcriptional Regulatory Circuits: Predicting Numbers from Alphabets [My Copy] Science, Vol. 325, No. 5939. (24 July 2009), pp. 429-432. by Harold D. Kim, Tal Shay, Erin K. O'Shea, Aviv Regev posted to single-cell networks genetics by pkm on 2009-09-25 11:39:14 as along with 16 people and 1 group ptrobajo rdiaz bborgeson guhjy sergiun emptyhb greg cajunsushi Borelli leliavski TRHvidsten jjray apocapoc fenghezi dswan daforerog Gene Regulation
	Regulation of noise in the expression of a single gene. [My Copy] Nat Genet, Vol. 31, No. 1. (May 2002), pp. 69-73. by E. M. Ozbudak, M. Thattai, I. Kurtser, A. D. Grossman, A. van Oudenaarden posted to stochasticity single-cell genetics by pkm on 2009-09-25 11:29:11 as along with 14 people balabu roys rklancer rahmilale dbikard mhucka margaritis kfm9876 vladimirov jiny dylanwalker klo austin jjray
	Spatial control of bacterial division-site placement [My Copy] Nat Rev Micro, Vol. 3, No. 12. (01 December 2005), pp. 959-968. by Lawrence Rothfield, Aziz Taghbalout, Yu-Ling Shih posted to single-cell cell-division by pkm on 2009-09-23 16:28:43 as
	Getting organized \|[mdash]\| how bacterial cells move proteins and DNA [My Copy] Nat Rev Micro, Vol. 6, No. 1. (01 January 2008), pp. 28-40. by Martin Thanbichler, Lucy Shapiro posted to single-cell cell-division by pkm on 2009-09-23 16:16:40 as along with 2 people ocs softsimu
	Bacterial cell shape [My Copy] Nature Reviews Microbiology, Vol. 3, No. 8. (11 July 2005), pp. 601-610. by Matthew T. Cabeen, Christine Jacobs-Wagner posted to single-cell cell-division by pkm on 2009-09-23 16:11:33 as along with 2 people AdamShaw bobturner
	New views of the bacterial chromosome. [My Copy] EMBO reports, Vol. 5, No. 9. (September 2004), pp. 860-864. by Susan T. Lovett, Anca M. Segall posted to single-cell cell-division by pkm on 2009-09-23 16:01:50 as
	Food Consumption Data in Microbiological Risk Assessment [My Copy] Journal of Food Protection® (September 2004), pp. 1972-1976. by Leila M. Barraj, Barbara J. Petersen posted to shou by pkm on 2009-09-22 11:47:44 as
	ComBase: A Common Database on Microbial Responses to Food Environments [My Copy] Journal of Food Protection® (September 2004), pp. 1967-1971. by Jozsef Baranyi, Mark L. Tamplin posted to shou by pkm on 2009-09-22 11:45:57 as
	Predictive microbiology: Quantitative science delivering quantifiable benefits to the meat industry and other food industries [My Copy] Meat Science, Vol. 77, No. 1. (September 2007), pp. 17-27. by T. McMeekin posted to shou by pkm on 2009-09-22 11:42:20 as
	Application of predictive modelling techniques in industry: From food design up to risk assessment [My Copy] International Journal of Food Microbiology, Vol. 128, No. 1. (30 November 2008), pp. 10-15. by J. Membre, R. Lambert posted to shou by pkm on 2009-09-22 10:10:59 as
	Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world [My Copy] Nucl. Acids Res., Vol. 36, No. 21. (1 December 2008), pp. 6688-6719. by Eugene V. Koonin, Yuri I. Wolf posted to speciation phylogeny genetics by pkm on 2009-09-21 16:13:48 as along with 10 people and 2 groups skembel Huub_odc druvus johanviklund sbottani Katje nklee barriot neils aramata Centre de Recherches Interdisciplinaires microbiology_nijmegen
	Bacterial cell division: assembly, maintenance and disassembly of the Z ring. [My Copy] Nature reviews. Microbiology, Vol. 7, No. 9. (01 September 2009), pp. 642-653. by David W. Adams, Jeff Errington posted to single-cell genetics cell-division by pkm on 2009-09-21 15:12:16 as along with 1 person bobturner
	Integrated microfluidic bioprocessor for single-cell gene expression analysis [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 51. (23 December 2008), pp. 20173-20178. by Nicholas M. Toriello, Erik S. Douglas, Numrin Thaitrong, et al.Sonny C. Hsiao, Matthew B. Francis, Carolyn R. Bertozzi, Richard A. Mathies posted to stochasticity single-cell by pkm on 2009-09-21 11:43:23 as along with 3 people abhishek_tiwari guhjy Vincent_Rouilly
	Modeling stochasticity and robustness in gene regulatory networks [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i101-109. by Abhishek Garg, Kartik Mohanram, Alessandro Di Cara, Giovanni De Micheli, Ioannis Xenarios posted to stochasticity single-cell by pkm on 2009-09-21 11:28:10 as along with 3 people and 1 group ruichu dlobo jvb GEB
	Stochasticity and Cell Fate [My Copy] Science, Vol. 320, No. 5872. (4 April 2008), pp. 65-68. by Richard Losick, Claude Desplan posted to stochasticity single-cell by pkm on 2009-09-21 11:22:03 as along with 8 people and 1 group adamnellis Arjeny lukaswindhager balabu margaritis paulschlesinger davidlott josedavid GEB
	Noise in gene expression: origins, consequences, and control. [My Copy] Science (New York, N.Y.), Vol. 309, No. 5743. (23 September 2005), pp. 2010-2013. by Jonathan M. Raser, Erin K. O'Shea posted to single-cell by pkm on 2009-09-21 10:13:42 as along with 21 people and 2 groups kentz Zephyrus guhjy thomaskelder bertelsen inesdesantiago ddcttrl rklancer monod dayjm xico nirfriedman koller mhucka margaritis suizan shikin dylanwalker kagibbs klo bpcusack WetBiology GeneGo

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single-cell	42
genetics	29
botulinum	14
campylobacter	12
phylogeny	12
clonality	11
shou	10
stochasticity	9
lag	8
germination	7
typing	6
cell-division	5
counting	4
mpn	4
risk	4
speciation	4
produce	3
vbnc	3
antimicrobial	2
networks	2
spores	2
transposons	2
communities	1
mental_models	1
microfluidic	1
survival	1
tracing	1
transcription	1
vibrio	1

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