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pmendes's kinetics [23 articles]

Recent papers added to pmendes's library classified by the tag kinetics. You can also see everyone's kinetics.
  • Something from nothing -- bridging the gap between constraint-based and kinetic modelling
    FEBS Journal, Vol. 274, No. 21. (November 2007), pp. 5576-5585.
    by Kieran Smallbone, Evangelos Simeonidis, David S Broomhead, Douglas B Kell
    posted to modelling metabolism kinetics by pmendes on 2008-06-26 14:17:15 as ** along with 2 people and 1 group peterli dbk dbk-lab
  • Dynamic simulation and metabolic re-design of a branched pathway using linlog kinetics.
    Metabolic engineering, Vol. 5, No. 3. (July 2003), pp. 164-176.
    by D Visser, JJ Heijnen
    posted to modelling mca kinetics by pmendes on 2008-06-26 13:58:38 as **
  • Approximative kinetic formats used in metabolic network modeling
    Biotechnology and Bioengineering, Vol. 91, No. 5. (2005), pp. 534-545.
    by Joseph J Heijnen
    posted to review modelling kinetics by pmendes on 2008-06-26 13:56:14 as *** along with 1 person fishtank
  • Stochastic simulation of chemical kinetics.
    Annu Rev Phys Chem, Vol. 58 (2007), pp. 35-55.
    by DT Gillespie
    posted to stochastic simulation review modelling kinetics by pmendes on 2008-05-12 00:05:35 as ** along with 3 people and 3 groups jjray dbikard carmaus Centre de Recherches Interdisciplinaires dIEMoSIRIS MoSi-Rostock
  • Extraction of elementary rate constants from global network analysis of E. coli central metabolism
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Jiao Zhao, Douglas Ridgway, Gordon Broderick, Andriy Kovalenko, Michael Ellison
    posted to parameter-estimation modelling kinetics by pmendes on 2008-05-11 16:59:38 as read along with 1 person jrbanga
  • Insights into Zn2+ homeostasis in neurons from experimental and modeling studies.
    American journal of physiology. Cell physiology, Vol. 294, No. 3. (March 2008), pp. C726-C742.
    by RA Colvin, AI Bush, I Volitakis, CP Fontaine, D Thomas, K Kikuchi, WR Holmes
    posted to used-gepasi used-copasi simulation modelling metabolism kinetics by pmendes on 2008-04-23 19:46:51 as **
  • Full-scale model of glycolysis in Saccharomyces cerevisiae
    Biophysical Chemistry, Vol. 94, No. 1-2. (11 December 2001), pp. 121-163.
    by F Hynne, S Dano, PG Sorensen
    posted to yeast simulation parameter-estimation nonlinear-dynamics modelling metabolism kinetics by pmendes on 2008-04-23 19:13:35 as ** along with 1 person westoll
  • Metabolic Control Analysis of Glycerol Synthesis in Saccharomyces cerevisiae
    Appl. Environ. Microbiol., Vol. 68, No. 9. (1 September 2002), pp. 4448-4456.
    by Garth R Cronwright, Johann M Rohwer, Bernard A Prior
    posted to simulation modelling metabolism kinetics by pmendes on 2008-04-23 19:04:31 as read along with 1 person athleem
  • Metabolic control mechanisms. 5. A solution for the equations representing interaction between glycolysis and respiration in ascites tumor cells.
    The Journal of Biological Chemistry, Vol. 235 (August 1960), pp. 2426-2439.
    by B Chance, D Garfinkel, J Higgins, B Hess
    posted to simulation modelling metabolism kinetics computer-archeology by pmendes on 2008-04-23 18:45:28 as read
  • The theory of oscillating reactions
    Industrial & Engineering Chemistry, Vol. 59, No. 5. (1967), pp. 18-62.
    by JJ Higgins
    posted to simulation oscillations nonlinear-dynamics modelling metabolism kinetics computer-archeology by pmendes on 2008-04-22 22:07:46 as ****
  • Analogue and digital representations of enzyme kinetics
    J. Biol. Chem., Vol. 235 (1960), pp. 2440-2443.
    by B Chance
    posted to simulation kinetics computer-archeology by pmendes on 2008-04-22 21:45:08 as read
  • A hybrid computer for the investigation of chemical reactions: the Johnson Foundation electronic computer, mark II
    Annals of the New York Academy of Sciences, Vol. 115 (31 July 1964), pp. 1025-1037.
    by JJ Higgins
    posted to simulation kinetics computer-archeology by pmendes on 2008-04-22 21:41:27 as ****
  • Analysis of sequential reactions
    Annals of the New York Academy of Sciences, Vol. 108 (1963), pp. 305-321.
    by JJ Higgins
    posted to modelling mca kinetics by pmendes on 2008-04-22 21:35:23 as read
  • The possible effect of the aggregation of the molecules of hæmoglobin.
    J. Physiol., Vol. 40 (1910), pp. iv-vii.
    by AV Hill
    posted to kinetics hill hemaglobin cooperativity by pmendes on 2008-04-22 21:15:33 as read
  • The reversible Hill equation: how to incorporate cooperative enzymes into metabolic models
    Comput. Appl. Biosci., Vol. 13, No. 4. (1 August 1997), pp. 377-385.
    by Jan-Hendrik S Hofmeyr, Hofmeyr Cornish-Bowden
    posted to modelling kinetics cooperativity by pmendes on 2008-04-22 21:11:20 as read along with 1 person and 1 group athleem JJJ
  • Role of substrate inhibition kinetics in enzymatic chemical oscillations.
    Biophysical journal, Vol. 67, No. 4. (October 1994), pp. 1414-1428.
    by P Shen, R Larter
    posted to kinetics metabolism modelling oscillations by pmendes on 2008-04-22 16:50:19 as **
  • Enzyme Kinetics: Behavior and Analysis of Rapid Equilibrium and Steady-State Enzyme Systems
    (06 July 1975)
    by Irwin H Segel
    posted to kinetics theory by pmendes on 2008-04-22 08:45:15 as read along with 1 person fishtank
  • Tandem driven dynamic combinatorial resolution via Henry-iminolactone rearrangement
    Chemical Communications, No. 6. (2008), pp. 768-770.
    by Marcus Angelin, Pornrapee Vongvilai, Andreas Fischer, Olof Ramstrom
    posted to kinetics used-copasi by pmendes on 2008-03-25 11:11:55 as **
  • Chromophore aspartate oxidation-decarboxylation in the green-to-red conversion of a fluorescent protein from Zoanthus sp. 2
    Biochemistry, Vol. 46, No. 41. (2007), pp. 11528-11535.
    by Alexey A Pakhomov, Vladimir I Martynov
    posted to kinetics simulation used-copasi by pmendes on 2008-03-25 10:47:47 as **
  • Dynamic rerouting of the carbohydrate flux is key to counteracting oxidative stress
    Journal of Biology, Vol. 6 (21 December 2007), 10.
    by Markus Ralser, Mirjam M Wamelink, Axel Kowald, Birgit Gerisch, Gino Heeren, Eduard A Struys, Edda Klipp, Cornelis Jakobs, Michael Breitenbach, Hans Lehrach, Sylvia Krobitsch
    posted to kinetics metabolism modelling pentose-phosphate-pathway used-copasi by pmendes on 2008-03-17 09:33:02 as *****
  • On the analysis of the inverse problem of metabolic pathways using artificial neural networks.
    Biosystems, Vol. 38, No. 1. (1996), pp. 15-28.
    by P Mendes, DB Kell
    posted to kinetics mendes modelling neural-networks reverse-engineering simulation used-gepasi by pmendes on 2008-02-29 17:41:33 as read along with 1 person and 2 groups dbk streptomyces dbk-lab
  • In situ kinetic analysis of glyoxalase I and glyoxalase II in Saccharomyces cerevisiae.
    Eur J Biochem, Vol. 268, No. 14. (July 2001), pp. 3930-3936.
    by AM Martins, P Mendes, C Cordeiro, AP Freire
    posted to glx kinetics mendes used-gepasi yeast by pmendes on 2008-02-29 17:33:05 as read
  • COPASI: a COmplex PAthway SImulator
    Bioinformatics, Vol. 22, No. 24. (15 December 2006), pp. 3067-3074.
    by Stefan Hoops, Sven Sahle, Christine Lee, Jurgen Pahle, Natalia Simus, Mudita Singhal, Liang Xu, Pedro Mendes, Ursula Kummer
    posted to copasi kinetics mendes simulation software stochastic systems-biology by pmendes on 2008-02-29 16:56:05 as read along with 4 people and 3 groups jyuh dragonrez carmaus dagmar dIEMoSIRIS MoSi-Rostock compneur
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