polivares's chip-seq [20 articles] Export Sort

Recent papers added to polivares's library classified by the tag chip-seq. You can also see everyone's chip-seq.

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	Computation for ChIP-seq and RNA-seq studies. [My Copy] Nature methods In Nat Meth, Vol. 6, No. 11 Suppl. (15 November 2009), pp. S22-S32. by Shirley Pepke, Barbara Wold, Ali Mortazavi posted to chip-seq by polivares on 2009-11-04 17:44:07 as along with 28 people and 2 groups aprasad humburg fenghezi n00c ongenetics urgi Jporci pst epigenetics timflutre molnet-mna Vincent_Rouilly guhjy cajunsushi mpizbioinfo stubrown hzoltan robertrentzsch xingxu oannes74 tonamswish inesdesantiago Baschl jwfoley druvus GeeSharpMinor chvlyl heliopais molnet-macs Orengo Group Journal Picks
	BayesPeak: Bayesian analysis of ChIP-seq data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 299. by Christiana Spyrou, Rory Stark, Andy Lynch, Simon Tavare posted to peak hmm chip-seq bayes by polivares on 2009-09-25 17:53:40 as along with 11 people and 4 groups Vincent_Rouilly tonamswish dswan fenghezi inesdesantiago idonaldson mkiyer druvus stajich humburg rschulz Bioinformatics JLab BergmanLab Mycology
	ChIP\|[ndash]\|seq: advantages and challenges of a maturing technology [My Copy] Nature Reviews Genetics, Vol. 10, No. 10. (08 September 2009), pp. 669-680. by Peter J. Park posted to hts chip-seq by polivares on 2009-09-10 13:13:26 as along with 25 people and 6 groups guhjy akakak hzoltan dchughes RyuOgawa heliopais giovenko inesdesantiago pradiptaray dakelley clearbluespring akundaje rdiaz kimorley leliavski humburg reyez qayub fenghezi tonamswish robertrentzsch idonaldson rschulz cvaldes danmaclean Journal picks Orengo Group Journal Picks JLab BergmanLab CTCF Chromatin
	FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology [My Copy] Bioinformatics In Bioinformatics, Vol. 24, No. 15. (1 August 2008), pp. 1729-1730. by Anthony P. Fejes, Gordon Robertson, Mikhail Bilenky, Richard Varhol, Matthew Bainbridge, Steven J. M. Jones posted to chip-seq hts by polivares on 2009-07-15 07:54:59 as along with 20 people and 2 groups torfinnnome hzoltan darian n00c idonaldson tonamswish ewilban1 humburg Thaverkamp natstreet druvus stajich cassj WanderingAengus rschulz jfr sconlan reyez guhjy vega Bioinformatics Mycology
	How to map billions of short reads onto genomes. [My Copy] Nature biotechnology, Vol. 27, No. 5. (01 May 2009), pp. 455-457. by Cole Trapnell, Steven L. Salzberg posted to assembly chip-seq hts solexa by polivares on 2009-06-16 16:41:30 as along with 32 people and 5 groups michaelbarton frohike agbiotec burak cthachuk hzoltan tonamswish heliopais giovenko jfr torfinnnome daforerog jonilaserson mkiyer Annab darian ghattem kiekyon n00c GeeSharpMinor guhjy nuin reyez orzenil Thaverkamp natstreet druvus fenghezi Stew inesdesantiago idonaldson neils Bioinformatics Chinnaiyan Lab BergmanLab SIMR bioinformatics Bioinformatics - CRUK
	A clustering approach for identification of enriched domains from histone modification ChIP-Seq data [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1952-1958. by Chongzhi Zang, Dustin E. Schones, Chen Zeng, Kairong Cui, Keji Zhao, Weiqun Peng posted to chip-seq chromatin by polivares on 2009-06-11 11:17:11 as along with 12 people and 2 groups hzoltan hagechouchin443 ashraya stubrown cassj guhjy humburg ewilban1 gdb inesdesantiago fenghezi ghattem SIMR bioinformatics BergmanLab
	Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1715-1721. by Hyungwon Choi, Alexey I. Nesvizhskii, Debashis Ghosh, Zhaohui S. Qin posted to chip-seq hmm by polivares on 2009-06-03 08:22:50 as along with 13 people and 1 group bsamal jfr tonamswish rdiaz fpattyn jcbarret guhjy hendrik85 inesdesantiago nklee ewilban1 idonaldson humburg Journal picks
	Bioinformatics challenges of new sequencing technology. [My Copy] Trends in genetics : TIG, Vol. 24, No. 3. (11 March 2008), pp. 142-149. by Mihai Pop, Steven L. Salzberg posted to chip-seq by polivares on 2009-02-13 19:08:15 as along with 36 people michaelbarton Jporci cthachuk hzoltan hpaces heliopais imaginatio operon daforerog n00c ptrobajo orzenil APRegier katholt kiekyon thegoose2 xingxu floatingpoint yupu treangen jmcq delenickphd giovenko jmeppley dchughes djkt GustavoLacerda niallhaslam urgi Neeperando jfr tharris mariakmejia caseybrown yoonk druvus
	Substantial biases in ultra-short read data sets from high-throughput DNA sequencing [My Copy] Nucl. Acids Res., Vol. 36, No. 16. (1 September 2008), e105. by Juliane C. Dohm, Claudio Lottaz, Tatiana Borodina, Heinz Himmelbauer posted to chip-seq by polivares on 2009-02-13 19:06:50 as along with 21 people and 1 group claire_jubin darian heliopais hzoltan jonilaserson n00c druvus orzenil burak woodson8 sameersoi humburg poschm Huub_odc usagi-kirin inesdesantiago jfr natstreet dakelley caseybrown GustavoLacerda microbiology_nijmegen
	Genomic location analysis by ChIP-Seq [My Copy] Journal of Cellular Biochemistry, Vol. 107, No. 1. (1 May 2009), pp. 11-18. by Artem Barski, Keji Zhao posted to chip-seq by polivares on 2009-01-30 12:23:05 as along with 9 people Vincent_Rouilly stubrown guhjy hagechouchin443 tonamswish humburg ewilban1 talponer cassj
	Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data [My Copy] Nature Methods, Vol. 5, No. 9. (17 August 2008), pp. 829-834. by Anton Valouev, David S. Johnson, Andreas Sundquist, et al.Catherine Medina, Elizabeth Anton, Serafim Batzoglou, Richard M. Myers, Arend Sidow posted to chip-seq by polivares on 2009-01-14 17:07:30 as along with 21 people and 1 group torfinnnome bsamal jwfoley ewilban1 nklee bertelsen stajich smiddha clearbluespring WanderingAengus ptrobajo mdperry idonaldson gdb megraw kengg alhufton guhjy kjglennie bryankr maximilianh Mycology
	Identifying Positioned Nucleosomes with Epigenetic Marks in Human from ChIP-Seq [My Copy] BMC Genomics, Vol. 9, No. 1. (2008), 537. by Yong Zhang, Hyunjin Shin, Jun Song, Ying Lei, X. Shirley Liu posted to nucleosome chip-seq by polivares on 2009-01-14 17:06:33 as along with 6 people antonkratz hagechouchin443 stubrown inesdesantiago idonaldson caseybrown
	Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data. [My Copy] Nucleic acids research, Vol. 36, No. 16. (6 September 2008), pp. 5221-5231. by R. Jothi, S. Cuddapah, A. Barski, K. Cui, K. Zhao posted to chip-seq by polivares on 2009-01-14 16:40:47 as along with 10 people tonamswish talponer ewilban1 guhjy mcm Eroslavochka inesdesantiago mdperry sebastien_vigneau idonaldson
	F-Seq: a feature density estimator for high-throughput sequence tags [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2537-2538. by Alan P. Boyle, Justin Guinney, Gregory E. Crawford, Terrence S. Furey posted to chip-seq hts by polivares on 2008-11-29 17:10:07 as along with 18 people and 2 groups hzoltan n00c darian idonaldson michaelbarton inesdesantiago gdb ewilban1 tonamswish guhjy kmdaily cassj fhalbrit jfr rschulz cthachuk zhouyu aprasad JLab BergmanLab
	Design and analysis of ChIP-seq experiments for DNA-binding proteins : Article : Nature Biotechnology [My Copy] posted to chip-seq by polivares on 2008-11-28 17:42:49 as
	An integrated software system for analyzing ChIP-chip and ChIP-seq data. [My Copy] Nature biotechnology, Vol. 26, No. 11. (02 November 2008), pp. 1293-1300. by Hongkai Ji, Hui Jiang, Wenxiu Ma, David S. Johnson, Richard M. Myers, Wing H. Wong posted to chip-seq by polivares on 2008-11-28 17:40:48 as along with 25 people and 3 groups bsamal hzoltan fpattyn stubrown isimpson huali tonamswish ewilban1 sebastien_vigneau jfr kmdaily cassj bryankr malcook rschulz mcm behindtherabbit psique renatomilani guhjy inesdesantiago pengchy kengg bais idonaldson Neuroblastoma SIMR bioinformatics BenosLab
	An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data [My Copy] Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2344-2349. by Han Xu, Chia-Lin Wei, Feng Lin, Wing-Kin Sung posted to chip-seq by polivares on 2008-11-28 17:40:07 as along with 8 people darian mkiyer tonamswish ewilban1 rschulz caseybrown djkt epigenetics
	Model-based Analysis of ChIP-Seq (MACS) [My Copy] Genome Biology, Vol. 9, No. 9. (2008), R137. by Yong Zhang, Tao Liu, Clifford Meyer, et al.Jerome Eeckhoute, David Johnson, Bradley Bernstein, Chad Nussbaum, Richard Myers, Myles Brown, Wei Li, X. Shirley Liu posted to chip-seq by polivares on 2008-11-28 17:39:46 as along with 25 people and 2 groups torfinnnome hzoltan Vincent_Rouilly darian stubrown mkiyer humburg cassj floatingpoint WanderingAengus bryankr jfr rschulz mcm gdb ghattem yadadi djkt stajich mdperry fpattyn bcondon idonaldson caseybrown kengg SIMR bioinformatics Mycology
	Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing [My Copy] Nature Methods, Vol. 4, No. 8. (11 June 2007), pp. 651-657. by Gordon Robertson, Martin Hirst, Matthew Bainbridge, et al.Misha Bilenky, Yongjun Zhao, Thomas Zeng, Ghia Euskirchen, Bridget Bernier, Richard Varhol, Allen Delaney, Nina Thiessen, Obi L. Griffith, Ann He, Marco Marra, Michael Snyder, Steven Jones posted to chip-seq by polivares on 2008-11-27 18:42:14 as along with 14 people and 1 group bedo absterga samanthacooper stubrown ewilban1 fpattyn caseybrown guhjy vega kengg ghattem slevy03 dquest raiyar Plantandetc
	ChIP-Seq Data Reveal Nucleosome Architecture of Human Promoters [My Copy] Cell, Vol. 131, No. 5. (30 November 2007), pp. 831-832. by Christoph D. Schmid, Philipp Bucher posted to chip-seq by polivares on 2008-11-27 17:56:07 as along with 4 people ewilban1 mikaelhuss vega dquest

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chromatin_domains	10
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review	9
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polivares's chip-seq [20 articles] Export Sort

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