poschm's library 24 articles Export

	Substantial biases in ultra-short read data sets from high-throughput DNA sequencing [My Copy] Nucl. Acids Res., Vol. 36, No. 16. (1 September 2008), e105. by Juliane C. Dohm, Claudio Lottaz, Tatiana Borodina, Heinz Himmelbauer posted to error_model gene_expression ngs by poschm on 2009-03-20 15:33:05 as along with 17 people and 1 group jonilaserson n00c druvus orzenil burak woodson8 sameersoi humburg polivares Huub_odc usagi-kirin inesdesantiago jfr natstreet dakelley caseybrown GustavoLacerda microbiology_nijmegen
	Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE) [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (2004) by Ricardo Vencio, Helena Brentani, Diogo Patrao, Carlos Pereira posted to gene_expression sage by poschm on 2009-03-12 05:38:58 as along with 2 people shikin fhalbrit
	Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms [My Copy] Nucl. Acids Res., Vol. 36, No. 21. (1 December 2008), e141. by Peter A. C. 't Hoen, Yavuz Ariyurek, Helene H. Thygesen, et al.Erno Vreugdenhil, Rolf H. A. M. Vossen, Renee X. de Menezes, Judith M. Boer, Gert-Jan B. van Ommen, Johan T. den Dunnen posted to gene_expression ngs by poschm on 2009-03-11 20:41:26 as along with 23 people GustavoLacerda stubrown GeeSharpMinor n00c guhjy hcoller daed stsaft azazello jfr slevy03 felsani usagi-kirin shikin coela cthachuk ojabado caseybrown abizar natstreet druvus rschulz pengchy
	High-Resolution Analysis of the 5′-End Transcriptome Using a Next Generation DNA Sequencer [My Copy] PLoS ONE, Vol. 4, No. 1. (1 January 2009), e4108. by Shin-ichi Hashimoto, Wei Qu, Budrul Ahsan, et al.Katsumi Ogoshi, Atsushi Sasaki, Yoichiro Nakatani, Yongjun Lee, Masako Ogawa, Akio Ametani, Yutaka Suzuki, Sumio Sugano, Clarence C. Lee, Robert C. Nutter, Shinichi Morishita, Kouji Matsushima posted to gene_expression ngs by poschm on 2009-03-11 20:40:43 as along with 8 people and 1 group jwfoley tprpip guhjy jfr jasontsai GustavoLacerda Cortel stajich Mycology
	FIRMA: a method for detection of alternative splicing from exon array data. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 15. (1 August 2008), pp. 1707-1714. by E. Purdom, K. M. Simpson, M. D. Robinson, J. G. Conboy, A. V. Lapuk, T. P. Speed posted to alternative_splicing chips gene_expression identification by poschm on 2009-02-27 16:26:53 as along with 4 people ongenetics darshan guhjy jfr
	Modeling splicing sites with pairwise correlations [My Copy] Bioinformatics, Vol. 18, No. suppl_2. (1 October 2002), pp. S27-34. by Masanori Arita, Koji Tsuda, Kiyoshi Asai posted to alternative_splicing gene_expression identification by poschm on 2009-02-27 16:24:04 as
	Inferring global levels of alternative splicing isoforms using a generative model of microarray data [My Copy] Bioinformatics, Vol. 22, No. 5. (1 March 2006), pp. 606-613. by Ofer Shai, Quaid D. Morris, Benjamin J. Blencowe, Brendan J. Frey posted to alternative_splicing chips identification by poschm on 2009-02-27 16:19:11 as along with 1 person and 1 group malcook SIMR bioinformatics
	Automated classification of alternative splicing and transcriptional initiation and construction of visual database of classified patterns [My Copy] Bioinformatics, Vol. 22, No. 10. (15 May 2006), pp. 1211-1216. by Hideki Nagasaki, Masanori Arita, Tatsuya Nishizawa, Makiko Suwa, Osamu Gotoh posted to alternative_splicing identification representation by poschm on 2009-02-27 16:17:54 as along with 1 person antonkratz
	Bioinformatic analysis of exon repetition, exon scrambling and trans-splicing in humans [My Copy] Bioinformatics, Vol. 22, No. 6. (15 March 2006), pp. 692-698. by Xiang Shao, Valery Shepelev, Alexei Fedorov posted to alternative_splicing error_model est by poschm on 2009-02-27 16:16:27 as along with 1 person cassj
	Genome wide identification and classification of alternative splicing based on EST data. [My Copy] Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2579-2585. by S. Gupta, D. Zink, B. Korn, M. Vingron, S. A. Haas posted to alternative_splicing error_model identification by poschm on 2009-02-27 16:14:47 as along with 3 people greg cantupaz radek
	Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing [My Copy] Nature Genetics, Vol. 40, No. 12. (02 November 2008), pp. 1413-1415. by Qun Pan, Ofer Shai, Leo J. Lee, Brendan J. Frey, Benjamin J. Blencowe posted to alternative_splicing gene_expression identification ngs by poschm on 2009-02-27 16:10:49 as along with 19 people torfinnnome n00c ericrpaquet jonilaserson ThomasDOtto giovanni frohike fenghezi jfr zxmon21 jmcq wimufi xingxu inesdesantiago jbhiatt rschulz djkt dchughes GeeSharpMinor
	Stem cell transcriptome profiling via massive-scale mRNA sequencing [My Copy] Nature Methods, Vol. 5, No. 7. (30 May 2008), pp. 613-619. by Nicole Cloonan, Alistair R. R. Forrest, Gabriel Kolle, et al.Brooke B. A. Gardiner, Geoffrey J. Faulkner, Mellissa K. Brown, Darrin F. Taylor, Anita L. Steptoe, Shivangi Wani, Graeme Bethel, Alan J. Robertson, Andrew C. Perkins, Stephen J. Bruce, Clarence C. Lee, Swati S. Ranade, Heather E. Peckham, Jonathan M. Manning, Kevin J. McKernan, Sean M. Grimmond posted to alternative_splicing gene_expression ngs by poschm on 2009-02-27 16:08:48 as along with 20 people jwfoley heliopais jmanning2k stubrown cassj n00c burak natstreet felsani jbhiatt vplagnol rschulz umit myourshaw megraw inesdesantiago GeeSharpMinor caseybrown guhjy gdb
	Mapping and quantifying mammalian transcriptomes by RNA-Seq. [My Copy] Nature methods, Vol. 5, No. 7. (30 July 2008), pp. 621-628. by Ali Mortazavi, Brian A. Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold posted to alternative_splicing application gene_expression ngs by poschm on 2009-02-27 16:07:34 as along with 40 people and 2 groups hzoltan jwfoley heliopais juokcho aktas debasis bertelsen idonaldson darian stubrown dswan ewilban1 mtagaya woodson8 burak jonilaserson inesdesantiago ThomasDOtto n00c GustavoG ghattem vplagnol druvus cfvillalta vmsr dandaman shikin jmcq rschulz lp2 tmcphillips jfr myourshaw megraw GeeSharpMinor caseybrown xingxu guhjy shurjo gdb Bioinformatics SIMR bioinformatics
	Molecular biology: Power sequencing [My Copy] Nature, Vol. 453, No. 7199. (26 June 2008), pp. 1197-1198. by Brenton R. Graveley posted to alternative_splicing gene_expression ngs by poschm on 2009-02-27 16:06:05 as along with 8 people inesdesantiago bertelsen myourshaw GustavoLacerda megraw dullhunk reyez GeeSharpMinor
	Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. [My Copy] Nature, Vol. 453, No. 7199. (26 June 2008), pp. 1239-1243. by Brian T. Wilhelm, Samuel Marguerat, Stephen Watt, et al.Falk Schubert, Valerie Wood, Ian Goodhead, Christopher J. Penkett, Jane Rogers, Jürg Bähler posted to alternative_splicing gene_expression ngs by poschm on 2009-02-27 16:04:26 as along with 13 people and 1 group manduca jmcq natstreet n00c TRHvidsten michaelbarton caseybrown myourshaw djkt jonathanjacobs GeeSharpMinor guhjy semrich Molecular Biology
	The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing [My Copy] Science, Vol. 320, No. 5881. (6 June 2008), pp. 1344-1349. by Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, et al.Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder posted to gene_expression ngs by poschm on 2009-02-27 15:53:32 as along with 23 people and 1 group bartjacobse GustavoLacerda debasis dbensasson cfvillalta rdowell jmcq waszak michaelbarton djkt urgi stajich semrich caseybrown gjuggler Retchless biomcgary GeeSharpMinor mapplab faion bpcusack guhjy shurjo Mycology
	Bioinformatics detection of alternative splicing. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 452 (2008), pp. 179-197. by N. Kim, C. Lee posted to alternative_splicing identification review by poschm on 2009-02-27 15:48:41 as
	Data analysis of alternative splicing microarrays. [My Copy] Drug discovery today, Vol. 11, No. 21-22. (November 2006), pp. 983-990. by M. Cuperlovic-Culf, N. Belacel, A. S. Culf, R. J. Ouellette posted to alternative_splicing chips review by poschm on 2009-02-27 15:47:00 as
	A statistical method for predicting splice variants between two groups of samples using GeneChip® expression array data [My Copy] Theoretical Biology and Medical Modelling, Vol. 3 (07 April 2006), 19. by Wenhong Fan, Najma Khalid, Andrew R. Hallahan, James M. Olson, Lue P. Zhao posted to alternative_splicing chips identification by poschm on 2009-02-27 15:44:03 as along with 1 person jfr
	EST analysis online: WWW tools for detection of SNPs and alternative splice forms [My Copy] Trends in Genetics, Vol. 16, No. 9. (1 September 2000), pp. 416-418. by D. Brett posted to alternative_splicing data_base snp by poschm on 2009-02-27 15:40:38 as
	Splicing graphs and EST assembly problem [My Copy] Bioinformatics, Vol. 18, No. suppl_1. (1 July 2002), pp. S181-188. by Steffen Heber, Max Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner posted to alternative_splicing representation by poschm on 2009-02-27 15:32:17 as along with 5 people nwpuzebra greg setar Cortel nedwards
	A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5891. (15 August 2008), pp. 956-960. by M. Sultan, M. H. Schulz, H. Richard, et al.A. Magen, A. Klingenhoff, M. Scherf, M. Seifert, T. Borodina, A. Soldatov, D. Parkhomchuk, D. Schmidt, S. O'Keeffe, S. Haas, M. Vingron, H. Lehrach, M. L. Yaspo posted to alternative_splicing ngs by poschm on 2009-02-27 15:28:10 as along with 27 people and 2 groups zufar eszczurek n00c dna inesdesantiago ilyashl TRHvidsten bertelsen ivanek guhjy wutongbin jfr raistrick gracio xingxu psique oelemento Ema reyez caseybrown kjglennie dh0000 GeeSharpMinor balicea djkt ArtemPankin zwang BenosLab Khavkin's lab
	Mapping short DNA sequencing reads and calling variants using mapping quality scores. [My Copy] Genome research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted to error_model ngs variants by poschm on 2009-02-27 15:26:15 as along with 35 people and 2 groups cthachuk darshan adijr darian bozdagd jmanning2k stubrown APRegier ghattem jbhiatt mmartin michaelbarton polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet jfr druvus dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman bpb gdb farhat SIMR bioinformatics BergmanLab
	PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data [My Copy] Genome Biology, Vol. 10, No. 2. (23 February 2009), R23. by Jan Korbel, Alexej Abyzov, Xinmeng Mu, et al.Nicholas Carriero, Philip Cayting, Zhengdong Zhang, Michael Snyder, Mark Gerstein posted to error_model ngs structural_variants by poschm on 2009-02-27 15:24:34 as along with 11 people orzenil adthrasher jessopher jrvalcourt dakelley Neeperando APRegier smiddha natstreet djkt druvus

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alternative_splicing	17
gene_expression	12
ngs	12
identification	8
error_model	5
chips	4
representation	2
review	2
application	1
data_base	1
est	1
sage	1
snp	1
structural_variants	1
variants	1

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