pradiptaray's crm [18 articles] Export

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	Functional Architecture and Evolution of Transcriptional Elements That Drive Gene Coexpression [My Copy] Science, Vol. 317, No. 5844. (14 September 2007), pp. 1557-1560. by Christopher D. Brown, David S. Johnson, Arend Sidow posted to tfbs motif evolution crm architecture by pradiptaray on 2009-09-30 21:52:13 as along with 10 people and 2 groups dpollard djkt joepickrell zwang Garamonfok Stew mimulus_99 maximilianh cisevol emptyhb EisenLab cis-regulatory-evolution
	Phylogeny based discovery of regulatory elements. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by J. Gertz, J. C. Fay, B. A. Cohen posted to crm footprinting hky85 motif phylogeny pwm regulation tfbs by pradiptaray on 2009-05-23 05:26:04 as along with 4 people and 2 groups druvus indigoviolet dquest cisevol EisenLab cis-regulatory-evolution
	Functional Analysis of Gene Duplications in Saccharomyces cerevisiae [My Copy] Genetics, Vol. 175, No. 2. (1 February 2007), pp. 933-943. by Yuanfang Guan, Maitreya J. Dunham, Olga G. Troyanskaya posted to crm duplication motif regulation tfbs yeast by pradiptaray on 2009-05-23 05:23:56 as along with 4 people and 1 group TaqSys csaveanu carlk cisevol cis-regulatory-evolution
	A cis-acting regulatory mutation causes premature hair graying and susceptibility to melanoma in the horse [My Copy] Nat Genet, Vol. 40, No. 8. (2008), pp. 1004-1009. by Rosengren, Anna Golovko, Elisabeth Sundstrom, et al.Ino Curik, Johan Lennartsson, Monika H. Seltenhammer, Thomas Druml, Matthew Binns, Carolyn Fitzsimmons, Gabriella Lindgren, Kaj Sandberg, Roswitha Baumung, Monika Vetterlein, Sara Stromberg, Manfred Grabherr, Claire Wade, Kerstin Lindblad-Toh, Fredrik Ponten, Carl-Henrik Heldin, Johann Solkner, Leif Andersson posted to crm by pradiptaray on 2008-10-01 17:22:38 as along with 1 person oelemento
	Selective Constraints in Experimentally Defined Primate Regulatory Regions [My Copy] PLoS Genet, Vol. 4, No. 8. (2008), e1000157. by Daniel J. Gaffney, Ran Blekhman, Jacek Majewski posted to crm evolution primate selection by pradiptaray on 2008-08-15 21:51:51 as along with 10 people and 2 groups daveGerrard xianjun madreach alhufton djkt bpcusack aprasad caseybrown maximilianh cisevol BergmanLab cis-regulatory-evolution
	Evolutionary analysis of the cis-regulatory region of the spicule matrix gene SM50 in strongylocentrotid sea urchins. [My Copy] Developmental biology, Vol. 315, No. 2. (15 March 2008), pp. 567-578. by J. Walters, E. Binkley, R. Haygood, L. A. Romano posted to crm evolution motif purpuratus regulation sea sm50 tfbs urchin by pradiptaray on 2008-08-07 16:38:42 as along with 1 person emptyhb
	Evolutionary analysis of the well characterized endo16 promoter reveals substantial variation within functional sites — PNAS [My Copy] PNAS, Vol. 102, No. 24. (June 2005), pp. 8591-8596. by J. P. Balhoff, Gregory A. Wray posted to crm endo16 evolution motif purpuratus sea tfbs urchin by pradiptaray on 2008-08-07 16:36:47 as
	Conservation of Endo16 expression in sea urchins despite evolutionary divergence in both cis and trans-acting components of transcriptional regulation. [My Copy] Development, Vol. 130, No. 17. (September 2003), pp. 4187-4199. by L. A. Romano, G. A. Wray posted to crm endo16 purpuratus regulation sea urchin by pradiptaray on 2008-08-07 16:34:02 as along with 2 people and 1 group maximilianh adepace EisenLab
	Quantitative functional interrelations within the cis-regulatory system of the S. purpuratus Endo16 gene [My Copy] Development, Vol. 122, No. 12. (1 December 1996), pp. 4045-4056. by C. H. Yuh, J. G. Moore, E. H. Davidson posted to crm endo16 interrelation purpuratus quantitative sea urchin by pradiptaray on 2008-08-07 16:28:13 as
	Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila. [My Copy] Nature, Vol. 433, No. 7025. (3 February 2005), pp. 481-487. by N. Gompel, B. Prud'homme, P. J. Wittkopp, V. A. Kassner, S. B. Carroll posted to crm drosophila evolution by pradiptaray on 2008-07-01 17:05:45 as along with 7 people and 2 groups athma balabu dpollard emilyhare adepace cisevol emptyhb EisenLab cis-regulatory-evolution
	[Reconstruction of ancestral regulatory signals along a transcription factor tree] [My Copy] Molekuliarnaia biologiia, Vol. 41, No. 5. (t 2007), pp. 918-925. by K. I. u. Gorbunov, V. A. Liubetskiĭĭ posted to ancestor crm evolution grn by pradiptaray on 2008-07-01 17:02:01 as along with 1 person and 1 group cisevol cis-regulatory-evolution
	Levers and fulcrums: progress in cis-regulatory motif models [My Copy] Nature Methods, Vol. 5, No. 4., pp. 297-298. by Ewan Birney posted to crm drosophila motif by pradiptaray on 2008-07-01 16:51:36 as along with 3 people and 2 groups stajich emptyhb isimpson EisenLab Mycology
	Statistical power of phylo-HMM for evolutionarily conserved element detection [My Copy] BMC Bioinformatics, Vol. 8 (05 October 2007), 374. by Xiaodan Fan, Jun Zhu, Eric E. Schadt, Jun S. Liu posted to crm hmm by pradiptaray on 2008-07-01 16:45:28 as along with 2 people and 1 group idonaldson isimpson BergmanLab
	PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation [My Copy] Genome Biology, Vol. 8 (04 October 2007), R207. by Elodie Portales-Casamar, Stefan Kirov, Jonathan Lim, et al.Stuart Lithwick, Magdalena I. Swanson, Amy Ticoll, Jay Snoddy, Wyeth W. Wasserman posted to annotation crm tool by pradiptaray on 2008-07-01 16:43:15 as along with 2 people and 3 groups dpollard cisevol EisenLab cis-regulatory-evolution BergmanLab
	Computation-Based Discovery of Cis-Regulatory Modules by Hidden Markov Model. [My Copy] J Comput Biol (11 March 2008) by Jing Wu, Jun Xie posted to crm hmm by pradiptaray on 2008-07-01 16:36:27 as along with 5 people and 1 group daveGerrard isimpson maximilianh cisevol csdhwang BergmanLab
	Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA. [My Copy] BMC genomics, Vol. 9 (17 May 2008), 226. by Nalini Polavarapu, Leonardo Mariño-Ramírez, David Landsman, John F. McDonald, I. King Jordan posted to crm evolution rate by pradiptaray on 2008-07-01 16:31:59 as along with 3 people and 2 groups daforerog cisevol bryankr BergmanLab cis-regulatory-evolution
	Understanding the recent evolution of the human genome: insights from human-chimpanzee genome comparisons [My Copy] Human Mutation, Vol. 28, No. 2. (2007), pp. 99-130. by Hildegard Kehrer-Sawatzki, David N. Cooper posted to chimpanzee crm genome human by pradiptaray on 2008-07-01 06:43:33 as along with 6 people and 2 groups bpb balicea dchughes sebastien_vigneau jpdemuth hpaces G4ID Genetics-of-Gambling
	Thousands of human mobile element fragments undergo strong purifying selection near developmental genes [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 19. (8 May 2007), pp. 8005-8010. by Craig B. Lowe, Gill Bejerano, David Haussler posted to crm evolution human selection by pradiptaray on 2008-07-01 02:10:09 as along with 3 people and 1 group bpb cisevol FMoncini cis-regulatory-evolution

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evolution	71
selection	34
phylogeny	19
crm	18
drosophila	18
motif	18
regulation	14
tfbs	13
genomics	12
human	11
coevolution	10
phylogeography	8
snp	7
cladistics	6
comparative	6
duplication	5
primate	5
alignment	4
hmm	4
purpuratus	4
rate	4
sea	4
urchin	4
ecology	3
endo16	3
genetics	3
grn	3
network	3
noncoding	3
species	3
test	3
vertebrate	3
yeast	3
ancestor	2
body	2
chimpanzee	2
chip-seq	2
clustering	2
darwin	2
finch	2
footprinting	2
gene	2
kreitman	2
plan	2
pwm	2
recombination	2
signalling	2
transposition	2
whole_genome	2
adh	1
annotation	1
architecture	1
arizonae	1
bacillus	1
bacteria	1
bayesian	1
bias	1
birdsong	1
bmp4	1
cetacea	1
character	1
chordate	1
coalescent	1
coding	1
coestimation	1
constrained	1
copy_number	1
cytoskeleton	1
definition	1
dinosaur	1
divergence	1
domain	1
elements	1
empirical	1
enhancer	1
ensemble	1
epigenetics	1
extinct	1
extremes	1
function	1
game_theory	1
gene_network	1
genography	1
genome	1
genotyping	1
hippopotamus	1
hky85	1
hsp70	1
influenza	1
insect	1
interrelation	1
lemur	1
malagasy	1
mammal	1
melanogaster	1
microarray	1
microsatellite	1
misidentification	1
ml	1
mobile	1
molecular	1
mrna	1
msa	1
neanderthal	1
overlap	1
overrepresentation	1
pachtor	1
pathway	1
pcr	1
phylogenetics	1
phylogenomics	1
plasmodium	1
population	1
prokaryote	1
protein	1
quantitative	1
region	1
rna	1
salix	1
sargasso	1
search	1
segmental_duplication	1
sequencing	1
sexual	1
shotgun	1
simulans	1
sm50	1
speciation	1
species_sampling	1
specificity	1
splicing	1
spurious	1
statistical_significance	1
structure	1
survey	1
tool	1
topography	1
transition	1
transposable	1
transposon	1
transversion	1
turnover	1
ultraconservation	1
ultraconserved	1
vav	1
whale	1
worm	1

pradiptaray's crm [18 articles] Export

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