pradiptaray's tfbs [13 articles] Export

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	Local DNA topography correlates with functional noncoding regions of the human genome. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5925. (17 April 2009), pp. 389-392. by Stephen C. Parker, Loren Hansen, Hatice Ozel O. Abaan, Thomas D. Tullius, Elliott H. Margulies posted to topography tfbs structure motif evolution enhancer by pradiptaray on 2009-09-30 21:55:16 as along with 38 people and 6 groups daveGerrard operon sujaikumar antonkratz roys gjuggler benjaminsb gdb hagechouchin443 tomtullius scjparker psique orzenil emptyhb ilyashl coela VGreiff APRegier myzhang pkonings akundaje athma absterga rpatward timflutre stajich bpcusack jbhiatt djkt dhlbh friendpine dpollard inesdesantiago JustinCrocker aprasad maximilianh idonaldson kshundyak BergmanLab Mycology structural_bioinformatics RockmanLab EisenLab cis-regulatory-evolution
	Divergence of Transcription Factor Binding Sites Across Related Yeast Species [My Copy] Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819. by Anthony R. Borneman, Tara A. Gianoulis, Zhengdong D. Zhang, et al.Haiyuan Yu, Joel Rozowsky, Michael R. Seringhaus, Lu Y. Wang, Mark Gerstein, Michael Snyder posted to yeast tfbs motif evolution duplication divergence by pradiptaray on 2009-09-30 21:53:18 as along with 22 people and 2 groups gdb fenghezi dbensasson caseybrown bryankr aalibes chad_davis dpollard djkt mikaelhuss lusk cjeans sujaikumar zwang GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb nklee anka EisenLab cis-regulatory-evolution
	Functional Architecture and Evolution of Transcriptional Elements That Drive Gene Coexpression [My Copy] Science, Vol. 317, No. 5844. (14 September 2007), pp. 1557-1560. by Christopher D. Brown, David S. Johnson, Arend Sidow posted to tfbs motif evolution crm architecture by pradiptaray on 2009-09-30 21:52:13 as along with 10 people and 2 groups dpollard djkt joepickrell zwang Garamonfok Stew mimulus_99 maximilianh cisevol emptyhb EisenLab cis-regulatory-evolution
	M are better than one: an ensemble-based motif finder and its application to regulatory element prediction [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 868-874. by Chen Yanover, Mona Singh, Elena Zaslavsky posted to tfbs motif ensemble by pradiptaray on 2009-09-30 21:33:50 as along with 5 people TRHvidsten djkt druvus mhamada maximilianh
	MotifCut: regulatory motifs finding with maximum density subgraphs [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. e150-157. by Eugene Fratkin, Brian T. Naughton, Douglas L. Brutlag, Serafim Batzoglou posted to tfbs motif clustering by pradiptaray on 2009-09-30 21:31:20 as along with 3 people and 1 group wowalz indigoviolet yevishere EisenLab
	Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites [My Copy] PLoS Comput Biol, Vol. 3, No. 5. (11 May 2007), e90. by Timothy E. Reddy, Charles DeLisi, Boris E. Shakhnovich posted to tfbs motif genomics clustering by pradiptaray on 2009-09-30 21:22:10 as along with 7 people and 1 group nklee aalibes dpollard medic0747 GustavoLacerda mircea marti EisenLab
	Phylogeny based discovery of regulatory elements. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by J. Gertz, J. C. Fay, B. A. Cohen posted to crm footprinting hky85 motif phylogeny pwm regulation tfbs by pradiptaray on 2009-05-23 05:26:04 as along with 4 people and 2 groups druvus indigoviolet dquest cisevol EisenLab cis-regulatory-evolution
	Functional Analysis of Gene Duplications in Saccharomyces cerevisiae [My Copy] Genetics, Vol. 175, No. 2. (1 February 2007), pp. 933-943. by Yuanfang Guan, Maitreya J. Dunham, Olga G. Troyanskaya posted to crm duplication motif regulation tfbs yeast by pradiptaray on 2009-05-23 05:23:56 as along with 4 people and 1 group TaqSys csaveanu carlk cisevol cis-regulatory-evolution
	Evolution of Transcription Factor Binding Sites in Mammalian Gene Regulatory Regions: Conservation and Turnover [My Copy] Mol Biol Evol, Vol. 19, No. 7. (1 July 2002), pp. 1114-1121. by Emmanouil T. Dermitzakis, Andrew G. Clark posted to evolution mammal motif tfbs turnover by pradiptaray on 2009-03-25 15:33:34 as along with 6 people and 2 groups fenghezi provero adepace cisevol emptyhb xili03 EisenLab cis-regulatory-evolution
	Evolutionary analysis of the cis-regulatory region of the spicule matrix gene SM50 in strongylocentrotid sea urchins. [My Copy] Developmental biology, Vol. 315, No. 2. (15 March 2008), pp. 567-578. by J. Walters, E. Binkley, R. Haygood, L. A. Romano posted to crm evolution motif purpuratus regulation sea sm50 tfbs urchin by pradiptaray on 2008-08-07 16:38:42 as along with 1 person emptyhb
	Evolutionary analysis of the well characterized endo16 promoter reveals substantial variation within functional sites — PNAS [My Copy] PNAS, Vol. 102, No. 24. (June 2005), pp. 8591-8596. by J. P. Balhoff, Gregory A. Wray posted to crm endo16 evolution motif purpuratus sea tfbs urchin by pradiptaray on 2008-08-07 16:36:47 as
	Discovery of novel transcription factor binding sites by statistical overrepresentation. [My Copy] Nucleic Acids Res, Vol. 30, No. 24. (15 December 2002), pp. 5549-5560. by S. Sinha, M. Tompa posted to motif overrepresentation regulation tfbs by pradiptaray on 2008-08-07 16:24:03 as along with 11 people wowalz GustavoLacerda kaarsinogen dquest xiaobeizhao smiddha GeeSharpMinor xi03 xili03 ep161302 wenhan
	Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes. [My Copy] Nucleic Acids Res, Vol. 29, No. 3. (1 February 2001), pp. 774-782. by L. McCue, W. Thompson, C. Carmack, et al.M. P. Ryan, J. S. Liu, V. Derbyshire, C. E. Lawrence posted to bacteria footprinting motif phylogeny prokaryote regulation tfbs by pradiptaray on 2008-08-07 16:23:07 as along with 4 people and 1 group azazello dquest adepace nklee EisenLab

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evolution	72
selection	34
crm	19
phylogeny	19
drosophila	18
motif	18
regulation	14
tfbs	13
genomics	12
human	11
coevolution	10
phylogeography	8
snp	7
cladistics	6
comparative	6
duplication	5
primate	5
alignment	4
hmm	4
purpuratus	4
rate	4
sea	4
urchin	4
ecology	3
endo16	3
genetics	3
grn	3
network	3
noncoding	3
species	3
test	3
vertebrate	3
yeast	3
ancestor	2
body	2
chimpanzee	2
chip-seq	2
clustering	2
darwin	2
finch	2
footprinting	2
gene	2
kreitman	2
plan	2
pwm	2
recombination	2
signalling	2
transposition	2
whole_genome	2
adh	1
annotation	1
architecture	1
arizonae	1
bacillus	1
bacteria	1
bayesian	1
bias	1
birdsong	1
bmp4	1
cetacea	1
character	1
chordate	1
coalescent	1
coding	1
coestimation	1
constrained	1
copy_number	1
cytoskeleton	1
definition	1
dinosaur	1
divergence	1
domain	1
elements	1
empirical	1
enhancer	1
ensemble	1
epigenetics	1
extinct	1
extremes	1
function	1
game_theory	1
gene_network	1
genography	1
genome	1
genotyping	1
hippopotamus	1
hky85	1
hsp70	1
influenza	1
insect	1
interrelation	1
lemur	1
malagasy	1
mammal	1
melanogaster	1
microarray	1
microsatellite	1
misidentification	1
ml	1
mobile	1
molecular	1
morphology	1
mrna	1
msa	1
neanderthal	1
overlap	1
overrepresentation	1
pachtor	1
pathway	1
pcr	1
phylogenetics	1
phylogenomics	1
plasmodium	1
population	1
prokaryote	1
protein	1
quantitative	1
region	1
rna	1
salix	1
sargasso	1
search	1
segmental_duplication	1
sequencing	1
sexual	1
shotgun	1
simulans	1
sm50	1
speciation	1
species_sampling	1
specificity	1
splicing	1
spurious	1
statistical_significance	1
structure	1
survey	1
tool	1
topography	1
transition	1
transposable	1
transposon	1
transversion	1
turnover	1
ultraconservation	1
ultraconserved	1
vav	1
whale	1
worm	1

pradiptaray's tfbs [13 articles] Export

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