provero's library 165 articles Export

	Adaptive evolution of non-coding DNA in Drosophila [My Copy] Nature, Vol. 437, No. 7062. (20 October 2005), pp. 1149-1152. by Peter Andolfatto posted to cre_evolution by provero on 2009-03-18 19:33:37 as along with 18 people and 4 groups gregoryross emptyhb timflutre tkmaia rouault stevanspringer bpb aprasad jmeppley balicea jimmithy emilyhare cdawson adepace pradiptaray Stew mimulus_99 cisevol EisenLab FAB-lab GIG cis-regulatory-evolution
	The mechanism of micro-RNA-mediated translation repression is determined by the promoter of the target gene [My Copy] Proceedings of the National Academy of Sciences (25 June 2008), 0800650105. by Yi W. Kong, Ian G. Cannell, Cornelia H. de Moor, et al.Kirsti Hill, Paul G. Garside, Tiffany L. Hamilton, Hedda A. Meijer, Helen C. Dobbyn, Mark Stoneley, Keith A. Spriggs, Anne E. Willis, Martin Bushell posted to no-tag by provero on 2009-03-18 19:23:01 as along with 7 people and 1 group pengchy valeriehilgers bertelsen heliopais bootsy maralena fpattyn microRNA
	Chimpanzee, Orangutan, Mouse, and Human Cell Cycle Promoters Exempt CCAAT Boxes and CHR Elements from Interspecies Differences [My Copy] Molecular Biology and Evolution, Vol. 24, No. 3. (March 2007), pp. 814-826. by Muller, A. Gerd, Heissig, Florian, Engeland, Kurt posted to cre_evolution by provero on 2009-03-18 16:34:47 as
	Divergent Evolution of Human p53 Binding Sites: Cell Cycle Versus Apoptosis. [My Copy] PLoS Genet, Vol. 3, No. 7. (27 July 2007) by M. M. Horvath, X. Wang, M. A. Resnick, D. A. Bell posted to cre_evolution by provero on 2009-03-18 16:32:41 as along with 1 person and 1 group Stew EisenLab
	A Promoter that Acquired p53 Responsiveness During Primate Evolution [My Copy] Cancer Res, Vol. 63, No. 8. (15 April 2003), pp. 1756-1758. by Ana Contente, Hans Zischler, Almuth Einspanier, Matthias Dobbelstein posted to cre_evolution by provero on 2009-03-18 16:30:37 as
	Positive selection on a human-specific transcription factor binding site regulating IL4 expression. [My Copy] Curr Biol, Vol. 13, No. 23. (2 December 2003), pp. 2118-2123. by M. V. Rockman, M. W. Hahn, N. Soranzo, D. B. Goldstein, G. A. Wray posted to cre_evolution by provero on 2009-03-17 08:57:34 as along with 1 person and 1 group cisevol cis-regulatory-evolution
	Positive selection on MMP3 regulation has shaped heart disease risk. [My Copy] Curr Biol, Vol. 14, No. 17. (7 September 2004), pp. 1531-1539. by M. V. Rockman, M. W. Hahn, N. Soranzo, D. A. Loisel, D. B. Goldstein, G. A. Wray posted to cre_evolution by provero on 2009-03-17 08:57:05 as along with 1 person and 1 group cisevol cis-regulatory-evolution
	Evolution of Transcription Factor Binding Sites in Mammalian Gene Regulatory Regions: Conservation and Turnover [My Copy] Mol Biol Evol, Vol. 19, No. 7. (1 July 2002), pp. 1114-1121. by Emmanouil T. Dermitzakis, Andrew G. Clark posted to cre_evolution by provero on 2009-03-16 11:42:44 as along with 6 people and 2 groups fenghezi pradiptaray adepace cisevol emptyhb xili03 EisenLab cis-regulatory-evolution
	Natural selection on human microRNA binding sites inferred from SNP data. [My Copy] Nat Genet (29 October 2006) by Kevin Chen, Nikolaus Rajewsky posted to cre_evolution genomic_variation microrna positive_selection by provero on 2009-03-16 11:36:43 as along with 13 people and 3 groups emptyhb capitall lp2 jfr tardigrade andersbj mtagaya ealloza plofje Garamonfok heliopais bpcusack ramensky Bioinformatics microRNA BioinfoCIPF
	Positive and Negative Selection on the Human Genome [My Copy] Genetics, Vol. 158, No. 3. (1 July 2001), pp. 1227-1234. by Justin C. Fay, Gerald J. Wyckoff, Chung-I Wu posted to cre_evolution positive_selection by provero on 2009-03-16 11:34:34 as along with 8 people and 1 group emptyhb gjuggler stevanspringer ramensky ankur_iitg shoshin friendpine skumagai FAB-lab
	Conserved noncoding sequences are selectively constrained and not mutation cold spots [My Copy] Nature Genetics, Vol. 38, No. 2. (25 December 2005), pp. 223-227. by Jared A. Drake, Christine Bird, James Nemesh, et al.Daryl J. Thomas, Christopher Newton-Cheh, Alexandre Reymond, Laurent Excoffier, Homa Attar, Stylianos E. Antonarakis, Emmanouil T. Dermitzakis, Joel N. Hirschhorn posted to cre_evolution by provero on 2009-03-16 11:22:23 as along with 8 people and 2 groups daforerog xianjun aprasad ccots ashandanj Stew cisevol bpcusack EisenLab cis-regulatory-evolution
	Small fitness effect of mutations in highly conserved non-coding regions. [My Copy] Hum Mol Genet, Vol. 14, No. 15. (1 August 2005), pp. 2221-2229. by G. V. Kryukov, S. Schmidt, S. Sunyaev posted to cre_evolution by provero on 2009-03-16 11:21:28 as along with 2 people and 1 group nosada17 cisevol cis-regulatory-evolution
	A genome-wide screen for noncoding elements important in primate evolution [My Copy] BMC Evolutionary Biology, Vol. 8 (23 January 2008), 17. by Eliot C. Bush, Bruce T. Lahn posted to cre_evolution by provero on 2009-03-16 11:20:45 as along with 2 people and 1 group balicea cisevol cis-regulatory-evolution
	The evolution of word composition in metazoan promoter sequence. [My Copy] PLoS computational biology, Vol. 2, No. 11. (3 November 2006) by E. C. Bush, B. T. Lahn posted to cre_evolution by provero on 2009-03-16 11:20:13 as
	Selective Constraint on Noncoding Regions of Hominid Genomes [My Copy] PLoS Comput Biol, Vol. 1, No. 7. (16 December 2005), e73. by Eliot C. Bush, Bruce T. Lahn posted to cre_evolution by provero on 2009-03-16 11:19:58 as along with 3 people and 1 group Garamonfok balicea cisevol cis-regulatory-evolution
	Detecting natural selection on cis-regulatory DNA [My Copy] Genetica, Vol. 129, No. 1. (January 2007), pp. 7-18. by Hahn, Matthew posted to cre_evolution by provero on 2009-03-16 11:18:12 as along with 4 people and 2 groups Zephyrus adepace cisevol emptyhb EisenLab cis-regulatory-evolution
	The evolutionary significance of cis-regulatory mutations [My Copy] Nature Reviews Genetics, Vol. 8, No. 3., pp. 206-216. by Gregory A. Wray posted to cre_evolution by provero on 2009-03-16 11:16:01 as along with 9 people and 4 groups athma maximilianh brant dpollard dchughes lusk mimulus_99 cisevol emptyhb EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
	Hitchhiking under positive Darwinian selection. [My Copy] Genetics, Vol. 155, No. 3. (July 2000), pp. 1405-1413. by J. C. Fay, C. I. Wu posted to cre_evolution by provero on 2009-03-16 10:47:49 as along with 6 people and 1 group ilyashl renewang maren operon ramensky dmc Durbin group
	Elevated gene expression levels distinguish human from non-human primate brains [My Copy] PNAS, Vol. 100, No. 22. (28 October 2003), pp. 13030-13035. by Mario Caceres, Joel Lachuer, Matthew A. Zapala, et al.John C. Redmond, Lili Kudo, Daniel H. Geschwind, David J. Lockhart, Todd M. Preuss, Carrolee Barlow posted to cre_evolution by provero on 2009-03-16 10:34:43 as along with 1 person natstreet
	Comparative Analysis of Gene-Expression Patterns in Human and African Great Ape Cultured Fibroblasts [My Copy] Genome Res., Vol. 13, No. 7. (1 July 2003), pp. 1619-1630. by Mazen W. Karaman, Marlys L. Houck, Leona G. Chemnick, et al.Shailender Nagpal, Daniel Chawannakul, Dominick Sudano, Brian L. Pike, Vincent V. Ho, Oliver A. Ryder, Joseph G. Hacia posted to cre_evolution by provero on 2009-03-16 10:33:48 as along with 1 person djkt
	Mixed-Model Reanalysis of Primate Data Suggests Tissue and Species Biases in Oligonucleotide-Based Gene Expression Profiles [My Copy] Genetics, Vol. 165, No. 2. (1 October 2003), pp. 747-757. by Wen-Ping Hsieh, Tzu-Ming Chu, Russell D. Wolfinger, Greg Gibson posted to cre_evolution by provero on 2009-03-16 10:32:06 as along with 1 person djkt
	Evolution at two levels: on genes and form. [My Copy] PLoS Biol, Vol. 3, No. 7. (July 2005) by S. B. Carroll posted to cre_evolution by provero on 2009-03-16 10:30:09 as along with 6 people and 2 groups athma dayjm bayesian echinotrix livingthingdan mimulus_99 cube_and_beyond livingthing
	The Evolution of Transcriptional Regulation in Eukaryotes [My Copy] Mol Biol Evol, Vol. 20, No. 9. (1 September 2003), pp. 1377-1419. by Gregory A. Wray, Matthew W. Hahn, Ehab Abouheif, et al.James P. Balhoff, Margaret Pizer, Matthew V. Rockman, Laura A. Romano posted to cre_evolution by provero on 2009-03-16 10:29:14 as along with 11 people and 5 groups athma wrowell ana dpollard adepace nickluscombe anatiferous mimulus_99 cisevol emptyhb emmahe structural_bioinformatics Bioinformatics EisenLab EBI-regulation cis-regulatory-evolution
	Evolutionary developmental biology and the problem of variation. [My Copy] Evolution Int J Org Evolution, Vol. 54, No. 4. (August 2000), pp. 1079-1091. by D. L. Stern posted to cre_evolution by provero on 2009-03-16 10:28:10 as along with 2 people and 1 group stevanspringer emptyhb FAB-lab
	Radical alterations in the roles of homeobox genes during echinoderm evolution. [My Copy] Nature, Vol. 389, No. 6652. (16 October 1997), pp. 718-721. by C. J. Lowe, G. A. Wray posted to cre_evolution by provero on 2009-03-16 10:27:31 as
	Population genetic and phylogenetic evidence for positive selection on regulatory mutations at the factor VII locus in humans. [My Copy] Genetics, Vol. 167, No. 2. (June 2004), pp. 867-877. by M. W. Hahn, M. V. Rockman, N. Soranzo, D. B. Goldstein, G. A. Wray posted to cre_evolution by provero on 2009-03-16 10:25:47 as along with 3 people and 1 group cisevol pradiptaray balicea cis-regulatory-evolution
	Functional analysis of human and chimpanzee promoters. [My Copy] Genome Biol, Vol. 6, No. 7. (2005) by F. Heissig, J. Krause, J. Bryk, P. Khaitovich, W. Enard, S. Pääbo posted to cre_evolution by provero on 2009-03-16 10:16:18 as along with 3 people and 1 group athma nickluscombe mariakmejia EBI-regulation
	Functional analysis of the chimpanzee and human apo(a) promoter sequences: identification of sequence variations responsible for elevated transcriptional activity in chimpanzee. [My Copy] The Journal of biological chemistry, Vol. 276, No. 25. (22 June 2001), pp. 22209-22214. by T. Huby, C. Dachet, R. M. Lawn, J. Wickings, M. J. Chapman, J. Thillet posted to cre_evolution by provero on 2009-03-16 10:15:26 as
	Inferring Nonneutral Evolution from Human-Chimp-Mouse Orthologous Gene Trios [My Copy] Science, Vol. 302, No. 5652. (12 December 2003), pp. 1960-1963. by Andrew G. Clark, Stephen Glanowski, Rasmus Nielsen, et al.Paul D. Thomas, Anish Kejariwal, Melissa A. Todd, David M. Tanenbaum, Daniel Civello, Fu Lu, Brian Murphy, Steve Ferriera, Gary Wang, Xianqgun Zheng, Thomas J. White, John J. Sninsky, Mark D. Adams, Michele Cargill posted to cre_evolution by provero on 2009-03-16 10:01:11 as along with 9 people and 1 group clearbluespring athma paszkows renewang ejeffery gjuggler hdopazo djkt Ema BioinfoCIPF
	A Scan for Positively Selected Genes in the Genomes of Humans and Chimpanzees [My Copy] PLoS Biol, Vol. 3, No. 6. (3 May 2005), e170. by Rasmus Nielsen, Carlos Bustamante, Andrew G. Clark, et al.Stephen Glanowski, Timothy B. Sackton, Melissa J. Hubisz, Adi Fledel-Alon, David M. Tanenbaum, Daniel Civello, Thomas J. White, Sninsky, Mark D. Adams, Michele Cargill posted to cre_evolution by provero on 2009-03-16 09:59:27 as along with 9 people and 3 groups gjuggler renewang stevanspringer jwortman bpb penka hdopazo djkt iris42 Nie FAB-lab BioinfoCIPF
	Natural selection on protein-coding genes in the human genome [My Copy] Nature, Vol. 437, No. 7062. (20 October 2005), pp. 1153-1157. by Carlos D. Bustamante, Adi Fledel-Alon, Scott Williamson, et al.Rasmus Nielsen, Melissa Todd Hubisz, Stephen Glanowski, David M. Tanenbaum, Thomas J. White, John J. Sninsky, Ryan D. Hernandez, Daniel Civello, Mark D. Adams, Michele Cargill, Andrew G. Clark posted to cre_evolution by provero on 2009-03-16 09:55:59 as along with 25 people and 5 groups JAShapiro tomhebbron VGreiff ilyashl athma jimithystok gjuggler renewang jo_davies stevanspringer operon jwortman aprasad dayjm balajis marcius dpollard hdopazo djkt JBEgwa01 ramensky Garamonfok iris42 dmc shoshin EisenLab FAB-lab BioinfoCIPF SGU-CIPF Durbin group
	Evolutionary constraints in conserved nongenic sequences of mammals [My Copy] Genome Res., Vol. 15, No. 10. (1 October 2005), pp. 1373-1378. by Peter D. Keightley, Gregory V. Kryukov, Shamil Sunyaev, Daniel L. Halligan, Daniel J. Gaffney posted to cre_evolution by provero on 2009-03-16 09:54:01 as along with 4 people and 1 group penka miniprep lilou ankur_iitg Nie
	Evidence for widespread degradation of gene control regions in hominid genomes. [My Copy] PLoS Biol, Vol. 3, No. 2. (February 2005) by P. D. Keightley, M. J. Lercher, A. Eyre-Walker posted to cre_evolution by provero on 2009-03-16 09:53:42 as along with 4 people and 1 group Garamonfok cisevol gjuggler emptyhb cis-regulatory-evolution
	Genetic analysis of genome-wide variation in human gene expression. [My Copy] Nature, Vol. 430, No. 7001. (12 August 2004), pp. 743-747. by Michael Morley, Cliona M. Molony, Teresa M. Weber, et al.James L. Devlin, Kathryn G. Ewens, Richard S. Spielman, Vivian G. Cheung posted to cre_evolution by provero on 2009-03-16 09:52:33 as along with 13 people and 1 group owenlancaster ajbattle athma caseybrown snuppepuppan kentsis RMGraze adepace qfwills vplagnol nagendraproj jo_davies mimulus_99 EisenLab
	Evolution at two levels in humans and chimpanzees. [My Copy] Science (New York, N.Y.), Vol. 188, No. 4184. (11 April 1975), pp. 107-116. by M. C. King, A. C. Wilson posted to cre_evolution by provero on 2009-03-16 09:51:31 as along with 7 people and 3 groups jeremymiller balicea dchughes cdawson ranb djkt emptyhb G4ID GIG Genetics-of-Gambling
	Phylogenetic shadowing of primate sequences to find functional regions of the human genome. [My Copy] Science, Vol. 299, No. 5611. (28 February 2003), pp. 1391-1394. by D. Boffelli, J. McAuliffe, D. Ovcharenko, et al.K. D. Lewis, I. Ovcharenko, L. Pachter, E. M. Rubin posted to cre_evolution by provero on 2009-03-16 09:37:07 as along with 3 people and 1 group gderwin nickluscombe gjuggler EBI-regulation
	Transcription regulation and animal diversity [My Copy] Nature, Vol. 424, No. 6945. (10 July 2003), pp. 147-151. by Michael Levine, Robert Tjian posted to cre_evolution by provero on 2009-03-16 09:36:25 as along with 10 people and 3 groups maximilianh dlobo Lauren_Jones xico nickluscombe djkt lusk Jporci heliopais brant GEB WetBiology EBI-regulation
	Functionality of Intergenic Transcription: An Evolutionary Comparison [My Copy] PLoS Genet, Vol. 2, No. 10. (13 October 2006), e171. by Philipp Khaitovich, Janet Kelso, Henriette Franz, et al.Johann Visagie, Thomas Giger, Sabrina Joerchel, Ekkehard Petzold, Richard E. Green, Michael Lachmann, Svante Pääbo posted to cre_evolution by provero on 2009-03-16 09:34:02 as along with 2 people and 2 groups inesdesantiago dchughes G4ID Genetics-of-Gambling
	Evolution of primate gene expression [My Copy] Nature Reviews Genetics, Vol. 7, No. 9., pp. 693-702. by Philipp Khaitovich, Wolfgang Enard, Michael Lachmann, Svante Pääbo posted to cre_evolution by provero on 2009-03-16 09:33:26 as along with 6 people xwbcn balicea usagi-kirin cjeans Manchester emarker
	Positive selection on gene expression in the human brain. [My Copy] Curr Biol (14 April 2006) by Philipp Khaitovich, Kun Tang, Henriette Franz, et al.Janet Kelso, Ines Hellmann, Wolfgang Enard, Michael Lachmann, Svante Pääbo posted to cre_evolution by provero on 2009-03-16 09:33:12 as along with 3 people and 1 group kndiaye ejeffery cmm FAB-lab
	Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees. [My Copy] Science (New York, N.Y.), Vol. 309, No. 5742. (16 September 2005), pp. 1850-1854. by Philipp Khaitovich, Ines Hellmann, Wolfgang Enard, et al.Katja Nowick, Marcus Leinweber, Henriette Franz, Gunter Weiss, Michael Lachmann, Svante Pääbo posted to cre_evolution by provero on 2009-03-16 09:32:54 as along with 11 people and 2 groups daveGerrard mox xwbcn balicea madhadron nickluscombe hdopazo djkt mikaelhuss JeffR100 usagi-kirin EBI-regulation BioinfoCIPF
	Aging and Gene Expression in the Primate Brain [My Copy] PLoS Biol, Vol. 3, No. 9. (2 August 2005), e274. by Hunter B. Fraser, Philipp Khaitovich, Joshua B. Plotkin, Svante Pääbo, Michael B. Eisen posted to cre_evolution by provero on 2009-03-16 09:32:01 as along with 1 person greg
	Intra- and Interspecific Variation in Primate Gene Expression Patterns [My Copy] Science, Vol. 296, No. 5566. (12 April 2002), pp. 340-343. by Wolfgang Enard, Philipp Khaitovich, Joachim Klose, et al.Sebastian Zollner, Florian Heissig, Patrick Giavalisco, Kay Nieselt-Struwe, Elaine Muchmore, Ajit Varki, Rivka Ravid, Gaby M. Doxiadis, Ronald E. Bontrop, Svante Paabo posted to cre_evolution by provero on 2009-03-16 09:31:28 as along with 5 people and 2 groups daveGerrard RMGraze nickluscombe ranb djkt BergmanLab EBI-regulation
	Evolution of candidate transcriptional regulatory motifs since the human-chimpanzee divergence [My Copy] Genome Biology, Vol. 7 (29 June 2006), R52. by Ian J. Donaldson, Berthold Göttgens posted to cre_evolution human_chimp positive_selection by provero on 2009-03-16 09:14:57 as along with 6 people and 2 groups mox indigoviolet ranb djkt cisevol idonaldson EisenLab cis-regulatory-evolution
	Ancient and Recent Positive Selection Transformed Opioid cis-Regulation in Humans. [My Copy] PLoS Biol, Vol. 3, No. 12. (15 November 2005) by Matthew V V. Rockman, Matthew W W. Hahn, Nicole Soranzo, Fritz Zimprich, David B B. Goldstein, Gregory A A. Wray posted to cre_evolution genomic_variation human_chimp by provero on 2009-03-16 09:12:40 as along with 10 people and 4 groups mbj imouthesmp indigoviolet dpollard Archaeogenetics happy_manatee djkt mgaldzic cisevol jphekman cube_and_beyond EisenLab CHIP cis-regulatory-evolution
	Genome-Wide Analysis of Natural Selection on Human Cis-Elements [My Copy] PLoS ONE, Vol. 3, No. 9. (2008), e3137. by Praveen Sethupathy, Hoa Giang, Joshua B. Plotkin, Sridhar Hannenhalli posted to cre_evolution by provero on 2009-03-16 09:11:26 as along with 4 people and 1 group ilyashl JustinCrocker cisevol bpcusack cis-regulatory-evolution
	The evolution of Fox genes and their role in development and disease. [My Copy] Nature reviews. Genetics (10 March 2009) by Sridhar Hannenhalli, Klaus H H. Kaestner posted to no-tag by provero on 2009-03-13 09:25:05 as along with 2 people fenghezi idonaldson
	Transitions between epithelial and mesenchymal states: acquisition of malignant and stem cell traits. [My Copy] Nature reviews. Cancer, Vol. 9, No. 4. (05 April 2009), pp. 265-273. by Kornelia Polyak, Robert A. Weinberg posted to no-tag by provero on 2009-03-13 09:21:42 as along with 5 people NicolSiegel aarongardner85 guhjy wsumthai tonamswish
	MicroRNAs--the micro steering wheel of tumour metastases. [My Copy] Nature reviews. Cancer, Vol. 9, No. 4. (5 April 2009), pp. 293-302. by Milena S. Nicoloso, Riccardo Spizzo, Masayoshi Shimizu, Simona Rossi, George A. Calin posted to no-tag by provero on 2009-03-13 09:21:17 as along with 6 people and 1 group guhjy jfr reyez tonamswish giovenko valeriehilgers microRNA
	Mosaic retroposon insertion patterns in placental mammals. [My Copy] Genome research, Vol. 19, No. 5. (4 May 2009), pp. 868-875. by Gennady Churakov, Jan Ole O. Kriegs, Robert Baertsch, Anja Zemann, Jürgen Brosius, Jürgen Schmitz posted to no-tag by provero on 2009-03-13 09:20:47 as along with 1 person aprasad

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cre_evolution	46
gene_expression	8
tfbs	6
cancer_signatures	5
breast_cancer	4
cancer	4
evolution	4
microrna	4
transcriptional_regulation	4
diffcoexp	3
eqtl	3
es_cells	3
genomic_variation	3
positive_selection	3
tf_affinity	3
transcriptome	3
alternative_promoters	2
alternative_splicing	2
disease_genes	2
epidem	2
genetics	2
human_chimp	2
network_reconstruction	2
speciation	2
bootstrap	1
essential_genes	1
ewing_sarcoma	1
exon_arrays	1
genetic_interaction	1
glioblastoma	1
gwa	1
imprinting	1
ips_cells	1
lung_cancer	1
melamir	1
mrna_sequencing	1
nucleosomes	1
random_boolean_networks	1
self_renewal	1

provero's library 165 articles Export

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