ptrobajo's library 678 articles Export

	Discovery of Regulatory Elements is Improved by a Discriminatory Approach [My Copy] PLoS Comput Biol, Vol. 5, No. 11. (13 November 2009), e1000562. by Eivind Valen, Albin Sandelin, Ole Winther, Anders Krogh posted to regulatory promoter motif element discriminatory classification by ptrobajo on 2009-11-20 14:57:49 as along with 3 people maximilianh TRHvidsten bertelsen
	Alternative Splicing in the Differentiation of Human Embryonic Stem Cells into Cardiac Precursors [My Copy] PLoS Comput Biol, Vol. 5, No. 11. (6 November 2009), e1000553. by Nathan Salomonis, Brandon Nelson, Karen Vranizan, et al.Alexander R. Pico, Kristina Hanspers, Allan Kuchinsky, Linda Ta, Mark Mercola, Bruce R. Conklin posted to stem splicing mirna microarray exon cell by ptrobajo on 2009-11-20 13:53:16 as
	Looking at Cerebellar Malformations through Text-Mined Interactomes of Mice and Humans [My Copy] PLoS Comput Biol, Vol. 5, No. 11. (6 November 2009), e1000559. by Ivan Iossifov, Raul Rodriguez-Esteban, Ilya Mayzus, Kathleen J. Millen, Andrey Rzhetsky posted to text mouse mining interactome human cross-species brain br45 by ptrobajo on 2009-11-20 13:52:39 as
	Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator. [My Copy] Molecular systems biology, Vol. 5 (03 November 2009) by Renata Usaite, Michael C. Jewett, Ana Paula P. Oliveira, John R. Yates, Lisbeth Olsson, Jens Nielsen posted to yeast regulatory network multimodel kinase integration anton-cls by ptrobajo on 2009-11-20 13:49:14 as along with 3 people arne greg pedrobeltrao
	A general modular framework for gene set enrichment analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (03 February 2009), 47. by Marit Ackermann, Korbinian Strimmer posted to geneset enrichment comparison benchmark by ptrobajo on 2009-11-18 20:29:39 as along with 17 people and 1 group zufar srp33 vingron dipenps shikin arjun_citeulike guhjy pk506 aviad_work thomaskelder ydhwang rdiaz kshameer renatomilani dswan cmzmasek RamuAnandakrishnan Bioinformatics
	Role of CBP and SATB-1 in Aging, Dietary Restriction, and Insulin-Like Signaling [My Copy] PLoS Biol, Vol. 7, No. 11. (17 November 2009), e1000245. by Minhua Zhang, Michal Poplawski, Kelvin Yen, et al.Hui Cheng, Erik Bloss, Xiao Zhu, Harshil Patel, Charles V. Mobbs posted to restriction insulin dietary diabetes brain br45 by ptrobajo on 2009-11-17 21:25:39 as
	Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt [My Copy] Nature Protocols, Vol. 4, No. 8. (23 July 2009), pp. 1184-1191. by Steffen Durinck, Paul T. Spellman, Ewan Birney, Wolfgang Huber posted to r integration education cancer breast biomart bioconductor annotation by ptrobajo on 2009-11-17 12:55:20 as along with 6 people daforerog srp33 ericrpaquet cassj frohike natstreet
	Illumina WG-6 BeadChip strips should be normalized separately [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 372. by Wei Shi, Ashish Banerjee, Matthew Ritchie, Steve Gerondakis, Gordon Smyth posted to normalization microarray marcel illumina by ptrobajo on 2009-11-11 20:04:55 as along with 2 people heliopais shikin
	KEGG for representation and analysis of molecular networks involving diseases and drugs. [My Copy] Nucleic acids research (30 October 2009) by Minoru Kanehisa, Susumu Goto, Miho Furumichi, Mao Tanabe, Mika Hirakawa posted to pathway kegg drug disease by ptrobajo on 2009-11-05 19:47:55 as
	Accurate molecular classification of cancer using simple rules [My Copy] BMC Medical Genomics, Vol. 2, No. 1. (2009), 64. by Xiaosheng Wang, Osamu Gotoh posted to selection micorarray herman feature classification cancer by ptrobajo on 2009-11-04 20:09:00 as along with 1 person phoenixzxl
	Getting Started in Gene Expression Microarray Analysis [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (30 October 2009), e1000543. by Donna K. Slonim, Itai Yanai posted to microarray education by ptrobajo on 2009-11-02 10:54:38 as along with 8 people and 1 group barriot laral inesdesantiago dswan iskathy Fournier34 renatomilani heliopais Bioinformatics
	Statistical methods for gene set co-expression analysis [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2780-2786. by YounJeong Choi, Christina Kendziorski posted to set milka gene differential diabetes co-expression by ptrobajo on 2009-11-02 10:44:17 as along with 7 people and 1 group jperkins natstreet heliopais dolchan zufar rdiaz neils Orengo Group Journal Picks
	Reconstructing signaling pathways from RNAi data using probabilistic Boolean threshold networks. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2229-2235. by Lars Kaderali, Eva Dazert, Ulf Zeuge, Michael Frese, Ralf Bartenschlager posted to signaling rnai reconstruction dragan boolean by ptrobajo on 2009-11-02 10:41:21 as along with 1 person fastjoe23
	Classification and biomarker identification using gene network modules and support vector machines. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (15 October 2009), 337. by Malik Yousef, Mohamed Ketany, Larry Manevitz, Louise C. Showe, Michael K. Showe posted to selection network geneset feature classification by ptrobajo on 2009-11-02 10:37:30 as along with 4 people and 1 group sillitoe ashishanand manduca frohike Orengo Group Journal Picks
	Integrating functional genomics data using maximum likelihood based simultaneous component analysis. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (16 October 2009), 340. by Robert A. van den Berg, Iven Van Mechelen, Tom F. Wilderjans, Katrijn Van Deun, Henk A. Kiers, Age K. Smilde posted to integration cross-species by ptrobajo on 2009-11-02 10:36:58 as along with 2 people and 1 group sillitoe ashishanand Orengo Group Journal Picks
	Detailing regulatory networks through large scale data integration [My Copy] Bioinformatics (13 October 2009), btp588. by Curtis Huttenhower, K. Tsheko Mutungu, Natasha Indik, et al.Woongcheol Yang, Mark Schroeder, Joshua J. Forman, Olga G. Troyanskaya, Hilary A. Coller posted to regulatory network integration compendium br45 bicluster bayesian by ptrobajo on 2009-11-02 10:19:57 as along with 4 people aaron_webber zufar rdiaz frohike
	A versatile peptide pI calculator for phosphorylated and N-terminal acetylated peptides experimentally tested using peptide isoelectric focusing. [My Copy] Proteomics, Vol. 8, No. 23-24. (December 2008), pp. 4898-4906. by Sharon Gauci, Bas van Breukelen, Simone M. Lemeer, Jeroen Krijgsveld, Albert J. Heck posted to peptide npc isoelectric focusing dave by ptrobajo on 2009-10-23 21:31:24 as
	Peptide microarrays for detailed, high-throughput substrate identification, kinetic characterization, and inhibition studies on protein kinase A [My Copy] Analytical Biochemistry, Vol. 387, No. 2. (15 April 2009), pp. 150-161. by Riet Hilhorst, Liesbeth Houkes, Adriënne van den Berg, Rob Ruijtenbeek posted to pamgene cls-anton by ptrobajo on 2009-10-22 16:00:13 as along with 1 person guhjy
	Protein-tyrosine kinase activity profiling in knock down zebrafish embryos. [My Copy] PloS one, Vol. 2, No. 7. (2007) by Simone Lemeer, Chris Jopling, Faris Naji, et al.Rob Ruijtenbeek, Monique Slijper, Albert J. Heck, Jeroen den Hertog posted to pamgene cls-anton by ptrobajo on 2009-10-22 15:57:43 as
	An Introduction to Metabolic Networks and Their Structural Analysis [My Copy] IEEE/ACM Transactions on Computational Biology and Bioinformatics In Computational Biology and Bioinformatics, IEEE/ACM Transactions on, Vol. 5, No. 4. (2008), pp. 594-617. by Vincent Lacroix, Ludovic Cottret, Patricia Thébault, Marie F. Sagot posted to review network miranda metabolic by ptrobajo on 2009-10-22 08:24:59 as along with 4 people cgaugain yujiangwang nsamways AbnerCYH
	The metabolic world of Escherichia coli is not small [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 6. (10 February 2004), pp. 1543-1547. by Masanori Arita posted to small-world network miranda metabolic ecoli by ptrobajo on 2009-10-21 21:02:48 as along with 11 people and 3 groups schwartzjmc camster PeterCollins riomenajang barry alexg tny azuma dylan77 Ema hryk dbk-lab structural_bioinformatics Bioinformatics
	Comprehensive microRNA profiling reveals a unique human embryonic stem cell signature dominated by a single seed sequence. [My Copy] Stem cells (Dayton, Ohio), Vol. 26, No. 6. (10 June 2008), pp. 1506-1516. by Louise C. Laurent, Jing Chen, Igor Ulitsky, et al.Franz-Josef J. Mueller, Christina Lu, Ron Shamir, Jian-Bing B. Fan, Jeanne F. Loring posted to stem mirna clustering cell by ptrobajo on 2009-10-20 13:26:19 as along with 5 people and 1 group tonamswish ericsuh valeriehilgers slevy03 jfr VUMCGenomics
	Computing Has Changed Biology--Biology Education Must Catch Up [My Copy] Science, Vol. 325, No. 5940. (31 July 2009), pp. 541-542. by Pavel Pevzner, Ron Shamir posted to education biology bioinformatics by ptrobajo on 2009-10-20 13:22:00 as along with 7 people remoteFuture rodrigofaccioli flbarroso lmichan allysonlister dinnes stevenbedrick
	HPD: an online integrated human pathway database enabling systems biology studies [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 11. (2009), S5. by Sudhir Chowbina, Xiaogang Wu, Fan Zhang, et al.Peter Li, Ragini Pandey, Harini Kasamsetty, Jake Chen posted to reactome pathway miranda kegg integration database by ptrobajo on 2009-10-16 13:43:26 as along with 1 person daforerog
	Genome-wide identification of post-translational modulators of transcription factor activity in human B cells [My Copy] Nature Biotechnology, Vol. 27, No. 9. (09 September 2009), pp. 829-837. by Kai Wang, Masumichi Saito, Brygida C. Bisikirska, et al.Mariano J. Alvarez, Wei K. Lim, Presha Rajbhandari, Qiong Shen, Ilya Nemenman, Katia Basso, Adam A. Margolin, Ulf Klein, Riccardo Dalla-Favera, Andrea Califano posted to transcription post-translational network kinase inference factor cls-anton aracne by ptrobajo on 2009-10-16 10:56:01 as along with 2 people heliopais leliavski
	R/BHC: fast Bayesian hierarchical clustering for microarray data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (6 August 2009), 242. by Richard Savage, Katherine Heller, Yang Xu, et al.Zoubin Ghahramani, William Truman, Murray Grant, Katherine Denby, David Wild posted to software r hierarchical clustering bayesian by ptrobajo on 2009-10-14 21:10:41 as along with 10 people and 1 group meanerelk nuin rdiaz guhjy lwaldron rschulz phoenixzxl barriot RamuAnandakrishnan erexhepa Bioinformatics
	Harnessing gene expression to identify the genetic basis of drug resistance [My Copy] Molecular Systems Biology, Vol. 5 (13 October 2009) by Bo-Juen Chen, Helen C. Causton, Denesy Mancenido, Noel L. Goddard, Ethan O. Perlstein, Dana Pe'er posted to yeast resistance phenotype genotype gene expression drug causal by ptrobajo on 2009-10-14 21:06:11 as along with 4 people dswan ashishanand phoenixzxl frohike
	A Complex-based Reconstruction of the Saccharomyces cerevisiae Interactome [My Copy] Mol Cell Proteomics, Vol. 8, No. 6. (1 June 2009), pp. 1361-1381. by Haidong Wang, Boyko Kakaradov, Sean R. Collins, et al.Lena Karotki, Dorothea Fiedler, Michael Shales, Kevan M. Shokat, Tobias C. Walther, Nevan J. Krogan, Daphne Koller posted to yeast protein overlap network integration complex cluster boosting by ptrobajo on 2009-10-14 20:50:24 as along with 2 people carlk anf
	The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes. [My Copy] Genome research, Vol. 19, No. 7. (4 July 2009), pp. 1316-1323. by Kim D. Pruitt, Jennifer Harrow, Rachel A. Harte, et al.Craig Wallin, Mark Diekhans, Donna R. Maglott, Steve Searle, Catherine M. Farrell, Jane E. Loveland, Barbara J. Ruef, Elizabeth Hart, Marie-Marthe M. Suner, Melissa J. Landrum, Bronwen Aken, Sarah Ayling, Robert Baertsch, Julio Fernandez-Banet, Joshua L. Cherry, Val Curwen, Michael Dicuccio, Manolis Kellis, Jennifer Lee, Michael F. Lin, Michael Schuster, Andrew Shkeda, Clara Amid, Garth Brown, Oksana Dukhanina, Adam Frankish, Jennifer Hart, Bonnie L. Maidak, Jonathan Mudge, Michael R. Murphy, Terence Murphy, Jeena Rajan, Bhanu Rajput, Lillian D. Riddick, Catherine Snow, Charles Steward, David Webb, Janet A. Weber, Laurens Wilming, Wenyu Wu, Ewan Birney, David Haussler, Tim Hubbard, James Ostell, Richard Durbin, David Lipman posted to protein mouse human gene cross-species consensus coding by ptrobajo on 2009-10-14 20:45:28 as along with 4 people and 1 group megraw timhubbard idonaldson ppgardne Journal picks
	How to identify essential genes from molecular networks? [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 102. by Gabriel D. Rio, Dirk Koschutzki, Gerardo Coello posted to yeast network miranda metabolic kegg by ptrobajo on 2009-10-14 20:35:26 as along with 7 people operon tmmurali kshameer phoenixzxl renatomilani druvus daforerog
	SubpathwayMiner: a software package for flexible identification of pathways. [My Copy] Nucleic acids research, Vol. 37, No. 19. (25 October 2009), gkp667. by Chunquan Li, Xia Li, Yingbo Miao, et al.Qianghu Wang, Wei Jiang, Chun Xu, Jing Li, Junwei Han, Fan Zhang, Binsheng Gong, Liangde Xu posted to pathway microarray kegg enrichment by ptrobajo on 2009-10-12 14:54:36 as along with 6 people and 1 group davidalee Vincent_Rouilly irenas renatomilani brianb neils Orengo Group Journal Picks
	KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (08 October 2009), 324. by Konstantinos Moutselos, Ioannis Kanaris, Aristotelis Chatziioannou, Ilias Maglogiannis, Fragiskos Kolisis posted to network modeling miranda metabolic kegg by ptrobajo on 2009-10-12 14:54:10 as along with 8 people and 1 group tonamswish Thaverkamp sillitoe trogdor druvus dullhunk reyez renatomilani Orengo Group Journal Picks
	Identification of genes involved in the same pathways using a Hidden Markov Model-based approach [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2945-2954. by Alexander Senf, Xue-wen Chen posted to pathway missing miranda microarray hmm gene by ptrobajo on 2009-10-12 13:24:11 as along with 2 people and 1 group poirel TRHvidsten Orengo Group Journal Picks
	From disease association to risk assessment: an optimistic view from genome-wide association studies on type 1 diabetes. [My Copy] PLoS genetics, Vol. 5, No. 10. (9 October 2009), e1000678. by Zhi Wei, Kai Wang, Hui-Qi Q. Qu, et al.Haitao Zhang, Jonathan Bradfield, Cecilia Kim, Edward Frackleton, Cuiping Hou, Joseph T. Glessner, Rosetta Chiavacci, Charles Stanley, Dimitri Monos, Struan F. Grant, Constantin Polychronakos, Hakon Hakonarson posted to svm risk individual gwas classification by ptrobajo on 2009-10-11 11:35:01 as along with 2 people rdiaz lp2
	Modeling Structure-Function Relationships in Synthetic DNA Sequences using Attribute Grammars [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (9 October 2009), e1000529. by Yizhi Cai, Matthew W. Lux, Laura Adam, Jean Peccoud posted to structure grammer function education dna attribute by ptrobajo on 2009-10-11 11:33:55 as along with 2 people abhishek_tiwari genocad
	PPARbeta/delta but not PPARalpha serves as plasma free fatty acid sensor in liver. [My Copy] Molecular and cellular biology (5 October 2009) by Linda M. Sanderson, Tatjana Degenhardt, Arjen Koppen, et al.Eric Kalkhoven, Beatrice Desvergne, Michael Müller, Sander Kersten posted to ppar milka fasting by ptrobajo on 2009-10-09 11:58:44 as
	Reactome array: forging a link between metabolome and genome. [My Copy] Science (New York, N.Y.), Vol. 326, No. 5950. (9 October 2009), pp. 252-257. by Ana Beloqui, María-Eugenia E. Guazzaroni, Florencio Pazos, et al.José M. Vieites, Marta Godoy, Olga V. Golyshina, Tatyana N. Chernikova, Agnes Waliczek, Rafael Silva-Rocha, Yamal Al-Ramahi, Violetta La Cono, Carmen Mendez, José A. Salas, Roberto Solano, Michail M. Yakimov, Kenneth N. Timmis, Peter N. Golyshin, Manuel Ferrer posted to reaction miranda metabolome genome array by ptrobajo on 2009-10-09 10:03:46 as along with 8 people and 1 group kinestetika renatomilani leliavski michaelbarton brianb abhishek_tiwari TRHvidsten gbloeb Shared Literature Resource of the Microbial Fitness Group - MPI Bremen
	Sensitive multiplexed analysis of kinase activities and activity-based kinase identification. [My Copy] Nature biotechnology, Vol. 27, No. 10. (04 October 2009), pp. 933-940. by Kazuishi Kubota, Rana Anjum, Yonghao Yu, et al.Ryan C. Kunz, Jannik N. Andersen, Manfred Kraus, Heike Keilhack, Kumiko Nagashima, Stefan Krauss, Cloud Paweletz, Ronald C. Hendrickson, Adam S. Feldman, Chin-Lee L. Wu, John Rush, Judit Villén, Steven P. Gygi posted to spectrometry phosphorylation mass kinase cls-anton activity by ptrobajo on 2009-10-07 22:57:34 as along with 3 people guhjy renatomilani brianb
	Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics [My Copy] PLoS Biol, Vol. 7, No. 10. (6 October 2009), e1000213. by Zhihua Li, Insuk Lee, Emily Moradi, Nai-Jung Hung, Arlen W. Johnson, Edward M. Marcotte posted to ribosomal protein network nazanin localization function by ptrobajo on 2009-10-06 21:23:58 as along with 4 people carlk tmmurali djkt lp2
	Kinome profiling in pediatric brain tumors as a new approach for target discovery. [My Copy] Cancer research, Vol. 69, No. 14. (15 July 2009), pp. 5987-5995. by Arend H. Sikkema, Sander H. Diks, Wilfred F. den Dunnen, et al.Arja ter Elst, Frank J. Scherpen, Eelco W. Hoving, Rob Ruijtenbeek, Piet J. Boender, Rik de Wijn, Willem A. Kamps, Maikel P. Peppelenbosch, Eveline S. de Bont posted to tumor pamgene kinomics cls-anton brain by ptrobajo on 2009-10-05 13:38:17 as
	Oncogenic Pathway Combinations Predict Clinical Prognosis in Gastric Cancer [My Copy] PLoS Genet, Vol. 5, No. 10. (2 October 2009), e1000676. by Chia H. Ooi, Tatiana Ivanova, Jeanie Wu, et al.Minghui Lee, Iain B. Tan, Jiong Tao, Lindsay Ward, Jun H. Koo, Veena Gopalakrishnan, Yansong Zhu, Lai L. Cheng, Julian Lee, Sun Y. Rha, Hyun C. Chung, Kumaresan Ganesan, Jimmy So, Khee C. Soo, Dennis Lim, Weng H. Chan, Wai K. Wong, David Bowtell, Khay G. Yeoh, Heike Grabsch, Alex Boussioutas, Patrick Tan posted to pathway gastric combination classification cancer by ptrobajo on 2009-10-02 19:38:13 as along with 3 people bertelsen brianb renatomilani
	Public Access to Genome-Wide Data: Five Views on Balancing Research with Privacy and Protection [My Copy] PLoS Genet, Vol. 5, No. 10. (2 October 2009), e1000665. by George Church, Catherine Heeney, Naomi Hawkins, et al.Jantina de Vries, Paula Boddington, Jane Kaye, Martin Bobrow, Bruce Weir, P3g Consortium posted to snp privacy gwas ethics by ptrobajo on 2009-10-02 19:33:27 as along with 3 people and 1 group perkeo kimorley Geknitics Journal picks
	Supervised risk predictor of breast cancer based on intrinsic subtypes. [My Copy] Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 27, No. 8. (10 March 2009), pp. 1160-1167. by Joel S. Parker, Michael Mullins, Maggie C. Cheang, et al.Samuel Leung, David Voduc, Tammi Vickery, Sherri Davies, Christiane Fauron, Xiaping He, Zhiyuan Hu, John F. Quackenbush, Inge J. Stijleman, Juan Palazzo, J. S. Marron, Andrew B. Nobel, Elaine Mardis, Torsten O. Nielsen, Matthew J. Ellis, Charles M. Perou, Philip S. Bernard posted to subtype classification cancer breast by ptrobajo on 2009-10-02 14:56:56 as along with 2 people misonneh jfr
	Unsupervised Analysis of Transcriptomic Profiles Reveals Six Glioma Subtypes [My Copy] Cancer Res, Vol. 69, No. 5. (1 March 2009), pp. 2091-2099. by Aiguo Li, Jennifer Walling, Susie Ahn, et al.Yuri Kotliarov, Qin Su, Martha Quezado, J. Carl Oberholtzer, John Park, Jean C. Zenklusen, Howard A. Fine posted to subtype glioma clustering classification by ptrobajo on 2009-10-02 14:48:24 as along with 1 person srp33
	Network analyses in systems pharmacology [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2466-2472. by Seth I. Berger, Ravi Iyengar posted to review network drug disease by ptrobajo on 2009-10-02 14:13:24 as along with 4 people abhishek_tiwari manduca mingzhi phoenixzxl
	Molecular networks as sensors and drivers of common human diseases [My Copy] Nature, Vol. 461, No. 7261. (09 September 2009), pp. 218-223. by Eric E. Schadt posted to review network genetics disease by ptrobajo on 2009-10-02 14:09:51 as along with 14 people robfree apocapoc MurphysLab biomcgary greg inesdesantiago pablocarb brianb abhishek_tiwari zufar pkonings rdiaz daforerog megraw
	Combinatorics and next-generation sequencing [My Copy] Nature Biotechnology, Vol. 27, No. 9. (01 September 2009), pp. 826-827. by Nick Patterson, Stacey Gabriel posted to sequencing review next-generation combinatorics by ptrobajo on 2009-10-02 13:46:55 as along with 7 people and 1 group ethanmj n00c orzenil torfinnnome inesdesantiago qayub rmk Journal picks
	From SNPs to pathways: integration of functional effect of sequence variations on models of cell signalling pathways. [My Copy] BMC bioinformatics, Vol. 10 Suppl 8, No. Suppl 8. (2009), S6. by Anna Bauer-Mehren, Laura I. Furlong, Michael Rautschka, Ferran Sanz posted to visualization snp signaling pathway network by ptrobajo on 2009-10-02 13:23:34 as along with 2 people dullhunk daforerog
	The Effects of Atherogenic Diet on Hepatic Gene Expression Across Mouse Strains. [My Copy] Physiological genomics (11 August 2009) by Keith R. Shockley, David Witmer, Sarah L. Burgess-Herbert, Beverly Paigen, Gary A. Churchill posted to obesity mouse metabolic disease diet br45 by ptrobajo on 2009-10-02 13:22:35 as
	Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistance [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3121-3127. by Peter J. Park, Sek W. Kong, Toma Tebaldi, Weil R. Lai, Simon Kasif, Isaac S. Kohane posted to resistance microarray insulin diabetes cross-species br45 by ptrobajo on 2009-10-02 13:20:14 as along with 3 people kshameer rdiaz thomaskelder

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network	153
microarray	119
expression	90
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gene	79
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nazanin	58
classification	52
mouse	50
protein	50
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integration	32
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cls-anton	30
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spectrometry	30
module	29
herman	28
model	25
proteomics	25
wouter	25
yeast	25
education	24
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seldi	24
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dragan	21
factor	21
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transcription	20
signature	19
enrichment	18
function	18
diabetes	15
drug	15
emiel	15
interaction	15
marcel	15
milka	15
signaling	15
biology	14
kegg	14
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illumina	13
inference	13
knockout	13
sara	13
systems	13
analysis	12
bayesian	12
biorange-matching	12
coexpression	12
microrna	12
association	11
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breast	10
comparison	10
design	10
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tissue	10
biorange	9
database	9
feature	9
metabolism	9
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protein-protein	9
br45	8
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genetic	8
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svm	8
text	8
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experimental	7
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rat	7
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cell	6
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genome-wide	6
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semi-supervised	6
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bias	5
boosting	5
correlation	5
cross-platform	5
factorization	5
geo	5
kinase	5
map	5
meta-analysis	5
noise	5
oligo	5
pamgene	5
r	5
random	5
tumor	5
visualization	5
binding	4
boolean	4
brain	4
deep-sequencing	4
ecoli	4
effect	4
genotype	4
hybridization	4
identification	4
least	4
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lukas	4
mixture	4
mrna	4
mutation	4
nfkb	4
phosphorylaytion	4
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stem	4
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transcriptomics	4
validation	4
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comparative	3
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control	3
cross-validation	3
disease-specific	3
fasting	3
forest	3
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halleri	3
heterogeneous	3
housekeeping	3
immunity	3
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insulin	3
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liver	3
man	3
mapk	3
matrix	3
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multivariate	3
niek	3
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thaliana	3
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trait	3
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atherosclerosis	2
background	2
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carsten	2
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clinical	2
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cyc	2
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dna	2
domain	2
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epxression	2
e-qtl	2
evolution	2
evolutionary	2
fat	2
fdr	2
frequent	2
fruitfly	2
go	2
gsea	2
guidelines	2
hierarchical	2
homology	2
hotelling	2
immune	2
immunology	2
interactome	2
interpretation	2
interval	2
itemset	2
kinetic	2
lasso	2
lda	2
list	2
macrophage	2
measurement	2
metagene	2
metastasis	2
method	2
methodology	2
miape	2
micorarray	2
mirna	2
molecular	2
molecule	2
mutant	2
next-generation	2
number	2
organization	2
ovarian	2
overlap	2
pathvisio	2
pca	2
peptide	2
phenome	2
plant	2
pooling	2
prior	2
protocol	2
reaction	2
reannotation	2
reduction	2
resistance	2
ribosomal	2
rnai	2
rodent	2
rosetta	2
r-package	2
service	2
similarity	2
small	2
spike-in	2
standards	2
statistical	2
subcellular	2
subtype	2
synthetic	2
syntren	2
system	2
testing	2
tiling	2
transitive	2
unlabeled	2
variation	2
wikipathways	2
zebrafish	2
70-gene	1
abundance	1
acgh	1
acid	1
adaptive	1
adipocyte	1
adult	1
aging	1
algorithm	1
alternating	1
amplification	1
angiogenic	1
animal	1
anova	1
anti-correlation	1
anton-cls	1
application	1
approximation	1
arrayexpress	1
atlas	1
attribute	1
backpropagation	1
bayes	1
bicluster	1
biclustering	1
bigg	1
bimodality	1
biomart	1
biopax	1
blast	1
blosum62	1
cadmium	1
cage	1
candidate	1
capture	1
cardiac	1
case-control	1
causal	1
cervical	1
chemogenomics	1
chemosensitivity	1
chimera	1
chimpanzee	1
chip-chip	1
chip-seq	1
chromosome	1
classificatiion	1
cluster	1
cnv	1
code	1
coding	1
coevolution	1
co-expression	1
collateral	1
combinatorics	1
community	1
completeness	1
complex	1
compound	1
connection	1
conservation	1
conserved	1
constraint	1
context	1
context-specific	1
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crm	1
crohn	1
curation	1
cytokine	1
cytoscape	1
dave	1
decision	1
deletions	1
detection	1
dictionary	1
diet	1
dietary	1
dimension	1
direct	1
dirichlet	1
discriminant	1
discriminatory	1
disorder	1
efficient	1
egfr	1
eigengene	1
element	1
elementary	1
em	1
e-map	1
empirical	1
endocytosis	1
ensemble	1
error	1
ethics	1
eukaryote	1
exon	1
expectation	1
experiment	1
fatty	1
feedback	1
flux	1
fly	1
focusing	1
fto	1
fuzzy	1
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gapdh	1
gastric	1
gaussian	1
gel	1
genomic	1
genomics	1
geometric	1
gerben	1
glioma	1
global	1
glucose	1
glucosykceramide	1
grammer	1
grid	1
groningen	1
group	1
gui	1
hapmap	1
heterogeneity	1
hexamer	1
hidden	1
hierarchy	1
histone	1
hmm	1
hnf	1
hub	1
humna	1
hypergraph	1
identifier	1
imaging	1
inbred_strains	1
individual	1
ineractome	1
insulin_resistance	1
interferon	1
islet	1
isoelectric	1
item	1
jamboree	1
joint	1
juvenile	1
kholodenko	1
kidney	1
laplacian	1
laser	1
learning	1
level	1
ligand	1
line	1
linear	1
literature	1
local	1
logic	1
lps	1
lung	1
lupus	1
macaques	1
machine	1
mammalian	1
maqc	1
markov	1
matching	1
maximization	1
measure	1
mechanistic	1
metabolite	1
metabolome	1
methods	1
mice	1
microarrray	1
microbe	1
mismatch	1
mixed	1
modifications	1
mole	1
monocyte	1
monocytes	1
morphogenesis	1
multimodal	1
multimodel	1
multiple	1
multi-primate	1
muscle	1
myc	1
nadp	1
nci	1
neural	1
neuroscience	1
nips	1
nonnegative	1
nugo	1
of	1
omim	1
optimal	1
optimization	1
organism	1
ortholog	1
outbred	1
outlier	1
oxidative	1
pahtway	1
pair	1
partial	1
pathogen	1
pathways	1
pattern	1
penalization	1
phosphorylation	1
physical	1
physiology	1
pipeline	1
placenta	1
post-translational	1
power	1
precision	1
privacy	1
probabilistic	1
probe-level	1
process	1
profiling	1
progression	1
project	1
properties	1
prospective	1
protein-coding	1
protein-dna	1
qtl	1
ratio	1
reactome	1
regularization	1
regulation	1
regulator	1
remote	1
rennotation	1
repeatibility	1
research	1
response	1
restriction	1
retrieval	1
revue	1
rhabdomyosarcoma	1
rice	1
risk	1
roc	1
roepman	1
sampling	1
saturation	1
search	1
seed	1
sensitivity	1
shape	1
shortcut	1
signal	1
sirna	1
site	1
situ	1
small-world	1
sparse	1
spatial	1
specificity	1
splicing	1
stereochemistry	1
stimulation	1
stoichiometry	1
stroma	1
studies	1
study	1
subset	1
survival	1
technical	1
tgfb	1
therapy	1
toll-like	1
topic	1
total	1
toxicology	1
transduction	1
translation	1
tree	1
tuberculosis	1
uncertainty	1
unsupervised	1
venn	1
viral	1
vst	1
warehouse	1
wide	1
wiki	1
workflow	1
wrapper	1
xenobiotics	1
zellweger	1

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