ptrobajo's cancer [38 articles] Export

Recent papers added to ptrobajo's library classified by the tag cancer. You can also see everyone's cancer.

	An integration of complementary strategies for gene-expression analysis to reveal novel therapeutic opportunities for breast cancer. [My Copy] Breast cancer research : BCR, Vol. 11, No. 4. (28 July 2009), R55. by Andrea H. Bild, Joel S. Parker, Adam M. Gustafson, et al.Chaitanya R. Acharya, Katherine A. Hoadley, Carey Anders, P. Kelly Marcom, Lisa A. Carey, Anil Potti, Joseph R. Nevins, Charles M. Perou posted to subtype signature cancer breast by ptrobajo on 2009-12-06 09:41:15 as along with 2 people bertelsen srp33
	Challenges in projecting clustering results across gene expression-profiling datasets. [My Copy] Journal of the National Cancer Institute, Vol. 99, No. 22. (21 November 2007), pp. 1715-1723. by Lara Lusa, Lisa M. McShane, James F. Reid, et al.Loris De Cecco, Federico Ambrogi, Elia Biganzoli, Manuela Gariboldi, Marco A. Pierotti posted to subtype effect cancer breast batch by ptrobajo on 2009-12-04 11:12:14 as along with 5 people frohike guhjy jfr giovenko laral
	The molecular portraits of breast tumors are conserved across microarray platforms. [My Copy] BMC genomics, Vol. 7, No. 1. (2006), 96. by Zhiyuan Hu, Cheng Fan, Daniel S. Oh, et al.J. S. Marron, Xiaping He, Bahjat F. Qaqish, Chad Livasy, Lisa A. Carey, Evangeline Reynolds, Lynn Dressler, Andrew Nobel, Joel Parker, Matthew G. Ewend, Lynda R. Sawyer, Junyuan Wu, Yudong Liu, Rita Nanda, Maria Tretiakova, Alejandra Ruiz Orrico, Donna Dreher, Juan P. Palazzo, Laurent Perreard, Edward Nelson, Mary Mone, Heidi Hansen, Michael Mullins, John F. Quackenbush, Matthew J. Ellis, Olufunmilayo I. Olopade, Philip S. Bernard, Charles M. Perou posted to subtype cancer breast by ptrobajo on 2009-12-04 11:11:41 as along with 4 people giovenko frohike jfr macavity1g
	Identification of novel kinase targets for the treatment of estrogen receptor-negative breast cancer. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 15, No. 20. (15 October 2009), pp. 6327-6340. by Corey Speers, Anna Tsimelzon, Krystal Sexton, et al.Ashley M. Herrick, Carolina Gutierrez, Aedin Culhane, John Quackenbush, Susan Hilsenbeck, Jenny Chang, Powel Brown posted to subtype kinase estrogen cancer breast by ptrobajo on 2009-12-01 21:23:08 as along with 1 person frohike
	Intrinsic bias in breast cancer gene expression data sets [My Copy] BMC Cancer, Vol. 9, No. 1. (29 June 2009), 214. by Jonathan Mosley, Ruth Keri posted to status er cancer breast by ptrobajo on 2009-11-26 11:33:19 as
	Repeated observation of breast tumor subtypes in independent gene expression data sets [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 14. (8 July 2003), pp. 8418-8423. by Therese SÃ¸rlie, Robert Tibshirani, Joel Parker, et al.Trevor Hastie, J. S. Marron, Andrew Nobel, Shibing Deng, Hilde Johnsen, Robert Pesich, Stephanie Geisler, Janos Demeter, Charles M. Perou, Per E. LÃ¸nning, Patrick O. Brown, Anne-Lise BÃ¸rresen-Dale, David Botstein posted to subtype intrinsic gene cancer breast by ptrobajo on 2009-11-26 10:41:40 as along with 5 people ipark-kaist Zephyrus jfr jo_davies frohike
	Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt. [My Copy] Nature protocols, Vol. 4, No. 8. (23 July 2009), pp. 1184-1191. by Steffen Durinck, Paul T. Spellman, Ewan Birney, Wolfgang Huber posted to r integration education cancer breast biomart bioconductor annotation by ptrobajo on 2009-11-17 12:55:20 as along with 6 people daforerog srp33 ericrpaquet cassj frohike natstreet
	Accurate molecular classification of cancer using simple rules [My Copy] BMC Medical Genomics, Vol. 2, No. 1. (2009), 64. by Xiaosheng Wang, Osamu Gotoh posted to microarray selection herman feature classification cancer by ptrobajo on 2009-11-04 20:09:00 as along with 1 person phoenixzxl
	Oncogenic Pathway Combinations Predict Clinical Prognosis in Gastric Cancer [My Copy] PLoS Genet, Vol. 5, No. 10. (2 October 2009), e1000676. by Chia H. Ooi, Tatiana Ivanova, Jeanie Wu, et al.Minghui Lee, Iain B. Tan, Jiong Tao, Lindsay Ward, Jun H. Koo, Veena Gopalakrishnan, Yansong Zhu, Lai L. Cheng, Julian Lee, Sun Y. Rha, Hyun C. Chung, Kumaresan Ganesan, Jimmy So, Khee C. Soo, Dennis Lim, Weng H. Chan, Wai K. Wong, David Bowtell, Khay G. Yeoh, Heike Grabsch, Alex Boussioutas, Patrick Tan posted to pathway gastric combination classification cancer by ptrobajo on 2009-10-02 19:38:13 as along with 3 people bertelsen brianb renatomilani
	Supervised risk predictor of breast cancer based on intrinsic subtypes. [My Copy] Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 27, No. 8. (10 March 2009), pp. 1160-1167. by Joel S. Parker, Michael Mullins, Maggie C. Cheang, et al.Samuel Leung, David Voduc, Tammi Vickery, Sherri Davies, Christiane Fauron, Xiaping He, Zhiyuan Hu, John F. Quackenbush, Inge J. Stijleman, Juan Palazzo, J. S. Marron, Andrew B. Nobel, Elaine Mardis, Torsten O. Nielsen, Matthew J. Ellis, Charles M. Perou, Philip S. Bernard posted to subtype classification cancer breast by ptrobajo on 2009-10-02 14:56:56 as along with 3 people Zephyrus misonneh jfr
	Gene expression in early stage cervical cancer. [My Copy] Gynecologic oncology, Vol. 108, No. 3. (March 2008), pp. 520-526. by Petra Biewenga, Marrije R. Buist, Perry D. Moerland, et al.Emiel Ver Loren van Themaat, Antoine H. van Kampen, Fiebo J. ten Kate, Frank Baas posted to microarray cervical cancer by ptrobajo on 2009-09-29 16:13:54 as
	mRNA expression profiles show differential regulatory effects of microRNAs between estrogen receptor-positive and estrogen receptor-negative breast cancer. [My Copy] Genome biology, Vol. 10, No. 9. (1 September 2009), R90. by Chao Cheng, Xuping Fu, Pedro Alves, Mark Gerstein posted to multimodal mrna microrna expression cancer breast by ptrobajo on 2009-09-21 14:07:55 as along with 5 people and 1 group frohike tonamswish megraw Schmidtc heliopais microRNA
	Modeling Cancer Progression via Pathway Dependencies [My Copy] PLoS Comput Biol, Vol. 4, No. 2. (15 February 2008), e28. by Elena J. Edelman, Justin Guinney, Jen-Tsan Chi, Phillip G. Febbo, Sayan Mukherjee posted to progression pathway geneset classification cancer by ptrobajo on 2009-09-17 15:20:31 as along with 6 people bertelsen wei aviad_work ipark-kaist bootsy jfr
	Prediction of cancer outcome with microarrays: a multiple random validation strategy. [My Copy] Lancet, Vol. 365, No. 9458. (11 February 2005), pp. 488-492. by Stefan Michiels, Serge Koscielny, Catherine Hill posted to validation sampling random microarray cancer by ptrobajo on 2009-09-17 15:18:54 as along with 9 people and 1 group srp33 aviad_work frohike setar textoris jfr chad_davis giovanni winterschlaefer GeschwindLab
	Gene expression signatures, clinicopathological features, and individualized therapy in breast cancer. [My Copy] JAMA : the journal of the American Medical Association, Vol. 299, No. 13. (2 April 2008), pp. 1574-1587. by Chaitanya R. Acharya, David S. Hsu, Carey K. Anders, et al.Ariel Anguiano, Kelly H. Salter, Kelli S. Walters, Richard C. Redman, Sascha A. Tuchman, Cynthia A. Moylan, Sayan Mukherjee, William T. Barry, Holly K. Dressman, Geoffrey S. Ginsburg, Kelly P. Marcom, Katherine S. Garman, Gary H. Lyman, Joseph R. Nevins, Anil Potti posted to therapy signature gene expression cancer by ptrobajo on 2009-09-17 10:38:35 as along with 4 people bertelsen Zephyrus jfr guhjy
	Computational prediction of cancer-gene function. [My Copy] Nature reviews. Cancer, Vol. 7, No. 1. (14 January 2007), pp. 23-34. by Pingzhao Hu, Gary Bader, Dennis A. Wigle, Andrew Emili posted to protein network miranda function education cancer by ptrobajo on 2009-09-17 09:51:05 as along with 7 people and 1 group guhjy jfr ealloza emb51 Garamonfok cerami srp33 BioinfoCIPF
	Pooling breast cancer datasets has a synergetic effect on classification performance and improves signature stability. [My Copy] BMC genomics, Vol. 9, No. 1. (06 August 2008), 375. by Martin H. van Vliet, Fabien Reyal, Hugo M. Horlings, Marc J. van de Vijver, Marcel J. Reinders, Lodewyk F. Wessels posted to signature pooling microarray integration herman cancer breast by ptrobajo on 2009-09-12 22:33:15 as along with 2 people jjrodriguez jfr
	Outcome signature genes in breast cancer: is there a unique set? [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 2. (15 January 2005), pp. 171-178. by Liat Ein-Dor, Itai Kela, Gad Getz, David Givol, Eytan Domany posted to signature selection herman feature cancer breast by ptrobajo on 2009-09-12 22:31:20 as along with 6 people and 2 groups vertikalist shikin zufar frohike fishtank winterschlaefer BTS-PT-AS-CS Bioinformatics
	Smoothened Mutation Confers Resistance to a Hedgehog Pathway Inhibitor in Medulloblastoma [My Copy] Science (2 September 2009), 1179386. by Robert L. Yauch, Gerrit J. P. Dijkgraaf, Bruno Alicke, et al.Thomas Januario, Christina P. Ahn, Thomas Holcomb, Kanan Pujara, Jeremy Stinson, Christopher A. Callahan, Tracy Tang, J. Fernando Bazan, Zhengyan Kan, Somasekar Seshagiri, Christine L. Hann, Stephen E. Gould, Jennifer A. Low, Charles M. Rudin, Frederic J. de Sauvage posted to mutation mouse human cross-species cancer by ptrobajo on 2009-09-04 21:08:38 as along with 3 people carelcad jessopher renatomilani
	ISOLATE: a computational strategy for identifying the primary origin of cancers using high-throughput sequencing [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2882-2889. by Gerald Quon, Quaid Morris posted to cancer deconvolution sequencing tumor by ptrobajo on 2009-06-29 16:01:59 as along with 4 people torfinnnome brianb nuin bgordski
	Pathway analysis of gene signatures predicting metastasis of node-negative primary breast cancer [My Copy] BMC Cancer, Vol. 7, No. 1. (25 September 2007), 182. by Jack Yu, Anieta Sieuwerts, Yi Zhang, et al.John Martens, Marcel Smid, Jan Klijn, Yixin Wang, John Foekens posted to breast cancer classification geneset signature pathway by ptrobajo on 2009-05-21 07:40:09 as along with 5 people and 2 groups suizan tonamswish Zephyrus jfr ealloza 8_01 BioinfoCIPF
	Dynamic modularity in protein interaction networks predicts breast cancer outcome. [My Copy] Nature biotechnology, Vol. 27, No. 2. (1 February 2009), pp. 199-204. by Ian W. Taylor, Rune Linding, David Warde-Farley, et al.Yongmei Liu, Catia Pesquita, Daniel Faria, Shelley Bull, Tony Pawson, Quaid Morris, Jeffrey L. Wrana posted to breast cancer hub interaction network protein by ptrobajo on 2009-03-31 16:23:26 as along with 14 people and 1 group ukhan zufar guhjy jfr frohike fenghezi jaimie nedwards dakelley absterga phoenixzxl grahamc provero brianb cube_and_beyond
	Cross-species oncogenomics in cancer gene identification. [My Copy] Cell, Vol. 125, No. 7. (30 June 2006), pp. 1230-1233. by D. Peeper, A. Berns posted to cancer cross-species human mouse by ptrobajo on 2008-10-30 21:18:12 as
	Of mice and men: cancer gene discovery using comparative oncogenomics. [My Copy] Cancer cell, Vol. 10, No. 1. (July 2006), pp. 2-4. by S. A. Tomlins, A. M. Chinnaiyan posted to cancer cross-species man mouse by ptrobajo on 2008-10-30 21:14:03 as
	Integrative molecular concept modeling of prostate cancer progression [My Copy] Nature Genetics, Vol. 39, No. 1. (17 December 2006), pp. 41-51. by Scott A. Tomlins, Rohit Mehra, Daniel R. Rhodes, et al.Xuhong Cao, Lei Wang, Saravana M. Dhanasekaran, Shanker Kalyana-Sundaram, John T. Wei, Mark A. Rubin, Kenneth J. Pienta, Rajal B. Shah, Arul M. Chinnaiyan posted to cancer compendium concept molecular signature by ptrobajo on 2008-10-30 21:10:32 as along with 7 people ipark-kaist kentsis jfr shigepong xingxu daed srp33
	Comprehensive genomic characterization defines human glioblastoma genes and core pathways [My Copy] Nature, Vol. 455, No. 7216. (04 September 2008), pp. 1061-1068. posted to atlas cancer genome integration research by ptrobajo on 2008-10-17 14:01:35 as along with 24 people and 2 groups ealloza iskathy srp33 dolchan ajbattle aezrin myzhang chrisamiller fenghezi jessopher jfr zufar wimufi jbhiatt frohike huiminC renatomilani cchand Zephyrus nuin brianb oelemento shikin shigepong Roswell Cancer Crosstalk GeneGo
	Models from experiments: combinatorial drug perturbations of cancer cells [My Copy] Molecular Systems Biology, Vol. 4 (02 September 2008) by Sven Nelander, Weiqing Wang, Bjorn Nilsson, et al.Qing-Bai She, Christine Pratilas, Neal Rosen, Peter Gennemark, Chris Sander posted to cancer combinatorial drug network perturbation by ptrobajo on 2008-10-17 13:21:46 as along with 6 people tjchen mingzhi jfr aheilbut oelemento balabu
	Mass spectrometry as a diagnostic and a cancer biomarker discovery tool: opportunities and potential limitations. [My Copy] Molecular & cellular proteomics : MCP, Vol. 3, No. 4. (April 2004), pp. 367-378. by E. P. Diamandis posted to cancer mass review seldi spectrometry wouter biomarker by ptrobajo on 2008-10-16 21:48:56 as
	Identification of key processes underlying cancer phenotypes using biologic pathway analysis. [My Copy] PLoS ONE, Vol. 2, No. 5. (2007) by S. Efroni, C. F. Schaefer, K. H. Buetow posted to cancer classification geneset pathway by ptrobajo on 2008-10-16 16:37:59 as along with 8 people ipark-kaist zufar cswinburne dragonrez jfr AlexanderPico daed thomaskelder
	Stromal gene expression predicts clinical outcome in breast cancer. [My Copy] Nature medicine, Vol. 14, No. 5. (May 2008), pp. 518-527. by Greg Finak, Nicholas Bertos, Francois Pepin, et al.Svetlana Sadekova, Margarita Souleimanova, Hong Zhao, Haiying Chen, Gulbeyaz Omeroglu, Sarkis Meterissian, Atilla Omeroglu, Michael Hallett, Morag Park posted to breast cancer expression gene microarray stroma by ptrobajo on 2008-08-08 10:59:09 as along with 5 people Zephyrus jfr tmmurali frohike aviad_work
	Ovarian cancer proteomics: Many technologies one goal [My Copy] PROTEOMICS - CLINICAL APPLICATIONS, Vol. 2, No. 2. (2008), pp. 195-218. by Kothandaraman Narasimhan, Zhao Changqing, Mahesh Choolani posted to cancer ovarian review wouter by ptrobajo on 2008-08-01 14:46:22 as
	SELDI-TOF proteomic profiling of breast carcinomas identifies clinicopathologically relevant groups of patients similar to previously defined clusters from cDNA expression [My Copy] Breast Cancer Research, Vol. 10 (29 May 2008), R48. by Kristyna Brozkova, Eva Budinska, Pavel Bouchal, et al.Lenka Hernychova, Dana Knoflickova, Dalibor Valik, Rostislav Vyzula, Borivoj Vojtesek, Rudolf Nenutil posted to breast cancer seldi wouter by ptrobajo on 2008-08-01 13:41:44 as
	Acute phase serum amyloid A in ovarian cancer as an important component of proteome diagnostic profiling [My Copy] PROTEOMICS - Clinical Applications, Vol. 1, No. 1. (2007), pp. 107-117. by Sergei A. Moshkovskii, Maria A. Vlasova, Mikhail A. Pyatnitskiy, et al.Olga V. Tikhonova, Metanat R. Safarova, Oleg V. Makarov, Alexander I. Archakov posted to cancer ovarian seldi wouter by ptrobajo on 2008-08-01 13:41:13 as
	Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors [My Copy] Genome Biology, Vol. 8, No. 5. (10 May 2007), R76. by Jason Herschkowitz, Karl Simin, Victor Weigman, et al.Igor Mikaelian, Jerry Usary, Zhiyuan Hu, Karen Rasmussen, Laundette Jones, Shahin Assefnia, Subhashini Chandrasekharan, Michael Backlund, Yuzhi Yin, Andrey Khramtsov, Roy Bastein, John Quackenbush, Robert Glazer, Powel Brown, Jeffrey Green, Levy Kopelovich, Priscilla Furth, Juan Palazzo, Olufunmilayo Olopade, Philip Bernard, Gary Churchill, Terry Van Dyke, Charles Perou posted to cancer cross-species human microarray mouse by ptrobajo on 2008-07-14 21:52:03 as along with 1 person frohike
	Revealing targeted therapy for human cancer by gene module maps. [My Copy] Cancer research, Vol. 68, No. 2. (15 January 2008), pp. 369-378. by D. J. Wong, D. S. Nuyten, A. Regev, et al.M. Lin, A. S. Adler, E. Segal, M. J. van de Vijver, H. Y. Chang posted to module map cls-anton cancer by ptrobajo on 2008-06-18 10:24:24 as along with 2 people frohike chrisamiller
	Module map of stem cell genes guides creation of epithelial cancer stem cells. [My Copy] Cell stem cell, Vol. 2, No. 4. (10 April 2008), pp. 333-344. by D. J. Wong, H. Liu, T. W. Ridky, D. Cassarino, E. Segal, H. Y. Chang posted to cancer cell map module stem by ptrobajo on 2008-06-18 10:18:41 as along with 1 person jimineep
	Use of 70-gene signature to predict prognosis of patients with node-negative breast cancer: a prospective community-based feasibility study (RASTER). [My Copy] The lancet oncology, Vol. 8, No. 12. (December 2007), pp. 1079-1087. by Jolien M. Bueno-de-Mesquita, Wim H. van Harten, Valesca P. Retel, et al.Laura J. van't Veer, Frits S. van Dam, Kim Karsenberg, Kirsten F. Douma, Harm van Tinteren, Johannes L. Peterse, Jelle Wesseling, Tin S. Wu, Douwe Atsma, Emiel J. Rutgers, Guido Brink, Arno N. Floore, Annuska M. Glas, Rudi M. Roumen, Frank E. Bellot, Cees van Krimpen, Sjoerd Rodenhuis, Marc J. van de Vijver, Sabine C. Linn posted to 70-gene breast cancer herman prospective signature study by ptrobajo on 2008-05-15 21:08:26 as along with 2 people jfr frohike
	Module-Based Outcome Prediction Using Breast Cancer Compendia [My Copy] PLoS ONE In PLoS ONE, Vol. 2, No. 10. (17 October 2007), e1047. by Martin H. van Vliet, Christiaan N. Klijn, Lodewyk F. A. Wessels, Marcel J. T. Reinders posted to cancer classification geneset module by ptrobajo on 2008-03-30 23:25:03 as along with 4 people Zephyrus winterschlaefer jfr macavity1g

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network	154
microarray	124
expression	92
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gene	82
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context-specific	1
phosphorylation	1
interferon	1
adaptive	1
inbred_strains	1
technical	1
amplification	1
wide	1
sensitivity	1
biomart	1
metabolite	1
lung	1
completeness	1
bicluster	1
stimulation	1
machine	1
capture	1
uncertainty	1
hapmap	1
element	1
wiki	1
adipocyte	1
stoichiometry	1
combinatorics	1
rhabdomyosarcoma	1
item	1
arrayexpress	1
sampling	1
monocytes	1
warehouse	1
laser	1
discriminatory	1
modifications	1
mole	1
ratio	1
markov	1
genetical	1
gui	1
outbred	1
protein-coding	1
direct	1

ptrobajo's cancer [38 articles] Export

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