ptrobajo's classification [52 articles] Export

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	Discovery of Regulatory Elements is Improved by a Discriminatory Approach [My Copy] PLoS Comput Biol, Vol. 5, No. 11. (13 November 2009), e1000562. by Eivind Valen, Albin Sandelin, Ole Winther, Anders Krogh posted to regulatory promoter motif element discriminatory classification by ptrobajo on 2009-11-20 14:57:49 as along with 4 people davfre maximilianh TRHvidsten bertelsen
	Accurate molecular classification of cancer using simple rules [My Copy] BMC Medical Genomics, Vol. 2, No. 1. (2009), 64. by Xiaosheng Wang, Osamu Gotoh posted to selection micorarray herman feature classification cancer by ptrobajo on 2009-11-04 20:09:00 as along with 1 person phoenixzxl
	Classification and biomarker identification using gene network modules and support vector machines. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (15 October 2009), 337. by Malik Yousef, Mohamed Ketany, Larry Manevitz, Louise C. Showe, Michael K. Showe posted to selection network geneset feature classification by ptrobajo on 2009-11-02 10:37:30 as along with 4 people and 1 group sillitoe ashishanand manduca frohike Orengo Group Journal Picks
	From disease association to risk assessment: an optimistic view from genome-wide association studies on type 1 diabetes. [My Copy] PLoS genetics, Vol. 5, No. 10. (9 October 2009), e1000678. by Zhi Wei, Kai Wang, Hui-Qi Q. Qu, et al.Haitao Zhang, Jonathan Bradfield, Cecilia Kim, Edward Frackleton, Cuiping Hou, Joseph T. Glessner, Rosetta Chiavacci, Charles Stanley, Dimitri Monos, Struan F. Grant, Constantin Polychronakos, Hakon Hakonarson posted to svm risk individual gwas classification by ptrobajo on 2009-10-11 11:35:01 as along with 2 people rdiaz lp2
	Oncogenic Pathway Combinations Predict Clinical Prognosis in Gastric Cancer [My Copy] PLoS Genet, Vol. 5, No. 10. (2 October 2009), e1000676. by Chia H. Ooi, Tatiana Ivanova, Jeanie Wu, et al.Minghui Lee, Iain B. Tan, Jiong Tao, Lindsay Ward, Jun H. Koo, Veena Gopalakrishnan, Yansong Zhu, Lai L. Cheng, Julian Lee, Sun Y. Rha, Hyun C. Chung, Kumaresan Ganesan, Jimmy So, Khee C. Soo, Dennis Lim, Weng H. Chan, Wai K. Wong, David Bowtell, Khay G. Yeoh, Heike Grabsch, Alex Boussioutas, Patrick Tan posted to pathway gastric combination classification cancer by ptrobajo on 2009-10-02 19:38:13 as along with 3 people bertelsen brianb renatomilani
	Supervised risk predictor of breast cancer based on intrinsic subtypes. [My Copy] Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 27, No. 8. (10 March 2009), pp. 1160-1167. by Joel S. Parker, Michael Mullins, Maggie C. Cheang, et al.Samuel Leung, David Voduc, Tammi Vickery, Sherri Davies, Christiane Fauron, Xiaping He, Zhiyuan Hu, John F. Quackenbush, Inge J. Stijleman, Juan Palazzo, J. S. Marron, Andrew B. Nobel, Elaine Mardis, Torsten O. Nielsen, Matthew J. Ellis, Charles M. Perou, Philip S. Bernard posted to subtype classification cancer breast by ptrobajo on 2009-10-02 14:56:56 as along with 3 people Zephyrus misonneh jfr
	Unsupervised Analysis of Transcriptomic Profiles Reveals Six Glioma Subtypes [My Copy] Cancer Res, Vol. 69, No. 5. (1 March 2009), pp. 2091-2099. by Aiguo Li, Jennifer Walling, Susie Ahn, et al.Yuri Kotliarov, Qin Su, Martha Quezado, J. Carl Oberholtzer, John Park, Jean C. Zenklusen, Howard A. Fine posted to subtype glioma clustering classification by ptrobajo on 2009-10-02 14:48:24 as along with 1 person srp33
	Classification-based comparison of pre-processing methods for interpretation of mass spectrometry generated clinical datasets. [My Copy] Proteome science, Vol. 7 (14 May 2009), 19. by Wouter Wegdam, Perry D. Moerland, Marrije R. Buist, et al.Emiel Ver Loren van Themaat, Boris Bleijlevens, Huub Cj C. Hoefsloot, Chris G. de Koster, Johannes Mfg M. Aerts posted to seldi pre-processing comparison classification by ptrobajo on 2009-09-29 16:12:51 as
	Analysis of gene expression using gene sets discriminates cancer patients with and without late radiation toxicity. [My Copy] PLoS medicine, Vol. 3, No. 10. (October 2006) by J. Peter Svensson, Lukas J. Stalpers, Rebecca E. Esveldt-van Lange, et al.Nicolaas A. Franken, Jaap Haveman, Binie Klein, Ingela Turesson, Harry Vrieling, Micheline Giphart-Gassler posted to radiation lukas geneset classification by ptrobajo on 2009-09-17 16:07:04 as along with 1 person jfr
	Modeling Cancer Progression via Pathway Dependencies [My Copy] PLoS Comput Biol, Vol. 4, No. 2. (15 February 2008), e28. by Elena J. Edelman, Justin Guinney, Jen-Tsan Chi, Phillip G. Febbo, Sayan Mukherjee posted to progression pathway geneset classification cancer by ptrobajo on 2009-09-17 15:20:31 as along with 6 people bertelsen wei aviad_work ipark-kaist bootsy jfr
	Data Integration for Classification Problems Employing Gaussian Process Priors [My Copy] In wentieth Annual Conference on Neural Information Processing Systems - NIPS 2006 (2006) by Mark Girolami, Mingjun Zhong posted to process nips integration gaussian data classification by ptrobajo on 2009-09-17 14:53:21 as
	Human disease classification in the postgenomic era: a complex systems approach to human pathobiology. [My Copy] Molecular systems biology, Vol. 3 (10 July 2007) by Joseph Loscalzo, Isaac Kohane, Albert-Laszlo L. Barabasi posted to systems human disease classification by ptrobajo on 2009-09-17 10:23:18 as along with 9 people and 2 groups Scis0000002 zufar Yanno kentsis jfr yas dchughes zwang nolodie G4ID Genetics-of-Gambling
	Stage II colon cancer prognosis prediction by tumor gene expression profiling. [My Copy] Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 24, No. 29. (10 October 2006), pp. 4685-4691. by Alain Barrier, Pierre-Yves Y. Boelle, François Roser, et al.Jennifer Gregg, Chantal Tse, Didier Brault, François Lacaine, Sidney Houry, Michel Huguier, Brigitte Franc, Antoine Flahault, Antoinette Lemoine, Sandrine Dudoit posted to microarray interval confidence classification by ptrobajo on 2009-09-17 09:43:33 as along with 2 people jfr frohike
	A genetic programming-based approach to the classification of multiclass microarray datasets [My Copy] Bioinformatics, Vol. 25, No. 3. (1 February 2009), pp. 331-337. by Kun-Hong Liu, Chun-Gui Xu posted to classification genetic herman microarray programming by ptrobajo on 2009-08-03 08:21:17 as along with 4 people turnersd jfr rdiaz nuin
	On reliable discovery of molecular signatures [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (29 January 2009), 38. by Roland Nilsson, Johan Bjorkegren, Jesper Tegner posted to classification fdr herman microarrray signature by ptrobajo on 2009-08-03 08:05:02 as along with 4 people and 1 group Zephyrus renatomilani guhjy jfr Roswell Cancer Crosstalk
	Automated multidimensional phenotypic profiling using large public microarray repositories [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 30. (28 July 2009), pp. 12323-12328. by Min Xu, Wenyuan Li, Gareth M. James, Michael R. Mehan, Xianghong J. Zhou posted to classification compendium phenotype by ptrobajo on 2009-07-15 21:47:00 as along with 8 people zufar tmmurali giovanni Borelli rdiaz guhjy TRHvidsten yaredo
	Selection of biologically relevant genes with a wrapper stochastic algorithm. [My Copy] Statistical applications in genetics and molecular biology, Vol. 6 (2007) by Kim-Anh A. Lê Cao, Olivier Gonçalves, Philippe Besse, Sébastien Gadat posted to classification feature herman selection wrapper by ptrobajo on 2009-07-07 21:50:18 as
	Pathway analysis of gene signatures predicting metastasis of node-negative primary breast cancer [My Copy] BMC Cancer, Vol. 7, No. 1. (25 September 2007), 182. by Jack Yu, Anieta Sieuwerts, Yi Zhang, et al.John Martens, Marcel Smid, Jan Klijn, Yixin Wang, John Foekens posted to breast cancer classification geneset signature pathway by ptrobajo on 2009-05-21 07:40:09 as along with 5 people and 2 groups suizan tonamswish Zephyrus jfr ealloza 8_01 BioinfoCIPF
	Three methods for optimization of cross-laboratory and cross-platform microarray expression data. [My Copy] Nucleic Acids Res, Vol. 35, No. 10. (2007) by P. Stafford, M. Brun posted to classification cross-validation expression herman microarray by ptrobajo on 2009-04-08 08:01:03 as along with 4 people heliopais guhjy jfr bertelsen
	Microarray-based classification and clinical predictors: on combined classifiers and additional predictive value [My Copy] Bioinformatics, Vol. 24, No. 15. (1 August 2008), pp. 1698-1706. by Anne-Laure Boulesteix, Christine Porzelius, Martin Daumer posted to classification clinical combination microarray by ptrobajo on 2009-03-31 20:43:04 as along with 4 people srp33 rdiaz giovanni aviad_work
	Molecular decomposition of complex clinical phenotypes using biologically structured analysis of microarray data. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 9. (1 May 2005), pp. 1971-1978. by Claudio Lottaz, Rainer Spang posted to classification geneset go microarray by ptrobajo on 2009-01-29 16:05:58 as along with 2 people and 1 group jfr ealloza BioinfoCIPF
	Improved prediction of treatment response using microarrays and existing biological knowledge [My Copy] Pharmacogenomics, Vol. 7, No. 3. (April 2006), pp. 495-501. by Simon M. Lin, Jyothi Devakumar, Warren A. Kibbe posted to classification geneset ontology pathway by ptrobajo on 2008-11-18 21:35:58 as
	Inferring Pathway Activity toward Precise Disease Classification [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (7 November 2008), e1000217. by Eunjung Lee, Han-Yu Chuang, Jong-Won Kim, Trey Ideker, Doheon Lee posted to classification geneset microarray pathway by ptrobajo on 2008-11-07 20:43:27 as along with 13 people rschulz isimpson yaredo frohike ipark-kaist jfr aviad_work ajbattle zufar carlk renatomilani dragonrez tmmurali
	The properties of high-dimensional data spaces: implications for exploring gene and protein expression data [My Copy] Nat Rev Cancer, Vol. 8, No. 1. (01 January 2008), pp. 37-49. by Robert Clarke, Habtom W. Ressom, Antai Wang, et al.Jianhua Xuan, Minetta C. Liu, Edmund A. Gehan, Yue Wang posted to classification education expression by ptrobajo on 2008-11-07 15:06:08 as along with 17 people and 1 group Zephyrus aviad_work ipark-kaist isimpson Scis0000002 baizhang bertelsen jfr guhjy tmmurali dwf frohike cjeans nedwards shikin blackm0k brianb Bioinformatics
	Analysis of sample set enrichment scores: assaying the enrichment of sets of genes for individual samples in genome-wide expression profiles [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. e108-116. by Elena Edelman, Alessandro Porrello, Justin Guinney, et al.Bala Balakumaran, Andrea Bild, Phillip G. Febbo, Sayan Mukherjee posted to classification enrichment geneset by ptrobajo on 2008-10-17 10:51:37 as along with 9 people and 1 group ipark-kaist guhjy aviad_work dragonrez jfr frohike heliopais barriot srp33 Bioinformatics
	Discrimination and scoring using small sets of genes for two-sample microarray data [My Copy] Mathematical Biosciences, Vol. 205, No. 2. (February 2007), pp. 195-203. by Gilles Guillot, Maja Olsson, Mikael Benson, Mats Rudemo posted to classification geneset hotelling by ptrobajo on 2008-10-17 10:42:52 as along with 2 people karfunkel smbe2008
	Supervised clustering of genes [My Copy] Genome Biology, Vol. 3, No. 12. (2002), pp. research0069.1-research0069.15. by Marcel Dettling, Peter Buhlmann posted to classification clustering geneset by ptrobajo on 2008-10-17 10:40:52 as
	Identification of serum proteins discriminating colorectal cancer patients and healthy controls using surface-enhanced laser desorption ionisation-time of flight mass spectrometry. [My Copy] World journal of gastroenterology : WJG, Vol. 12, No. 10. (14 March 2006), pp. 1536-1544. by J. Y. Engwegen, H. H. Helgason, A. Cats, et al.N. Harris, J. M. Bonfrer, J. H. Schellens, J. H. Beijnen posted to classification seldi wouter biomarker by ptrobajo on 2008-10-17 10:34:00 as
	Validation of SELDI-TOF MS serum protein profiles for renal cell carcinoma in new populations. [My Copy] Lab Invest, Vol. 87, No. 2. (February 2007), pp. 161-172. by J. Y. Engwegen, N. Mehra, J. B. Haanen, et al.J. M. Bonfrer, J. H. Schellens, E. E. Voest, J. H. Beijnen posted to classification seldi validation wouter biomarker by ptrobajo on 2008-10-17 10:32:58 as along with 1 person guhjy
	How to distinguish healthy from diseased? Classification strategy for mass spectrometry-based clinical proteomics [My Copy] PROTEOMICS, Vol. 7, No. 20. (2007), pp. 3672-3680. by Margriet M. W. B. Hendriks, Suzanne Smit, Wies L. M. W. Akkermans, et al.Theo H. Reijmers, Paul H. C. Eilers, Huub C. J. Hoefsloot, Carina M. Rubingh, Chris G. de Koster, Johannes M. Aerts, Age K. Smilde posted to classification protocol seldi wouter by ptrobajo on 2008-10-16 21:59:47 as along with 3 people olberd wilbur rvosa
	A protocol for building and evaluating predictors of disease state based on microarray data [My Copy] Bioinformatics, Vol. 21, No. 19. (1 October 2005), pp. 3755-3762. by Lodewyk F. Wessels, Marcel J. Reinders, Augustinus A. Hart, et al.Cor J. Veenman, Hongyue Dai, Yudong D. He, Laura J. Veer posted to classification feature herman microarray protocol selection by ptrobajo on 2008-10-16 21:56:51 as
	Identification of key processes underlying cancer phenotypes using biologic pathway analysis. [My Copy] PLoS ONE, Vol. 2, No. 5. (2007) by S. Efroni, C. F. Schaefer, K. H. Buetow posted to cancer classification geneset pathway by ptrobajo on 2008-10-16 16:37:59 as along with 8 people ipark-kaist zufar cswinburne dragonrez jfr AlexanderPico daed thomaskelder
	Averaged gene expressions for regression [My Copy] Biostatistics, Vol. 8, No. 2. (April 2007), pp. 212-227. by Park, Mee Young, Hastie, Trevor, Tibshirani, Robert posted to classification expression geneset microarray by ptrobajo on 2008-10-13 08:44:06 as
	Supervised group Lasso with applications to microarray data analysis [My Copy] BMC Bioinformatics, Vol. 8 (22 February 2007), 60. by Shuangge Ma, Xiao Song, Jian Huang posted to classification geneset group lasso microarray by ptrobajo on 2008-10-13 08:29:04 as along with 3 people jfr rdiaz ghattem
	Algebraic stability indicators for ranked lists in molecular profiling [My Copy] Bioinformatics, Vol. 24, No. 2. (15 January 2008), pp. 258-264. by Giuseppe Jurman, Stefano Merler, Annalisa Barla, Silvano Paoli, Antonio Galea, Cesare Furlanello posted to classification herman measure ranking signature by ptrobajo on 2008-10-10 09:47:57 as along with 4 people guhjy jfr chad_davis barriot
	Biological sequence classification utilizing positive and unlabeled data. [My Copy] Bioinformatics (14 March 2008) by Yuanyuan Xiao, Mark R R. Segal posted to classification nazanin sequence unlabeled by ptrobajo on 2008-07-30 12:15:29 as along with 4 people eckart_bindewald mdstobbe djkt guhjy
	Derivation of stable microarray cancer-differentiating signatures using consensus scoring of multiple random sampling and gene-ranking consistency evaluation. [My Copy] Cancer Res, Vol. 67, No. 20. (15 October 2007), pp. 9996-10003. by Z. Q. Tang, L. Y. Han, H. H. Lin, et al.J. Cui, J. Jia, B. C. Low, B. W. Li, Y. Z. Chen posted to classification herman ranking signature stability by ptrobajo on 2008-07-11 15:58:19 as along with 2 people frohike jfr
	Reliable gene signatures for microarray classification: assessment of stability and performance. [My Copy] Bioinformatics (31 July 2006) by Chad A A. Davis, Fabian Gerick, Volker Hintermair, et al.Caroline C C. Friedel, Katrin Fundel, Robert Küffner, Ralf Zimmer posted to classification herman microarray signature stability by ptrobajo on 2008-07-11 15:37:21 as along with 5 people jfr chad_davis rdiaz efge incovoma
	Classification based upon gene expression data: bias and precision of error rates. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 11. (1 June 2007), pp. 1363-1370. by Ian A. Wood, Peter M. Visscher, Kerrie L. Mengersen posted to precision gene expression cross-validation classification bias by ptrobajo on 2008-07-11 15:33:15 as along with 2 people guhjy shigepong
	Using the information embedded in the testing sample to break the limits caused by the small sample size in microarray-based classification [My Copy] BMC Bioinformatics, Vol. 9 (14 June 2008), 280. by Manli Zhu, Aleix M. Martinez posted to classification lda sample semi-supervised size by ptrobajo on 2008-07-03 12:55:46 as along with 1 person jfr
	Classification in the presence of class noise using a probabilistic Kernel Fisher method [My Copy] Pattern Recogn., Vol. 40, No. 12. (December 2007), pp. 3349-3357. by Yunlei Li, Lodewyk F. A. Wessels, Dick de Ridder, Marcel J. T. Reinders posted to classification emiel kernel noise pipeline by ptrobajo on 2008-07-01 15:59:27 as
	Mass spectrometry proteomic diagnosis: enacting the double cross-validatory paradigm. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 13, No. 9. (November 2006), pp. 1591-1605. by B. J. Mertens, M. E. De Noo, R. A. Tollenaar, A. M. Deelder posted to classification cross-validation mass seldi spectrometry by ptrobajo on 2008-07-01 12:26:09 as along with 1 person olberd
	A gene sets approach for identifying prognostic gene signatures for outcome prediction [My Copy] BMC Genomics, Vol. 9, No. 1. (2008) by Seon Y. Kim, Yong S. Kim posted to classification geneset signature by ptrobajo on 2008-06-18 12:07:57 as along with 4 people Zephyrus jfr barriot srp33
	Knowledge - based Gene Expression Classification via Matrix Factorization. [My Copy] Bioinformatics (Oxford, England) (5 June 2008) by R Schachtner, D Lutter, P Knollmüller, et al.A M M. Tomé, F J J. Theis, G Schmitz, M Stetter, P Gómez G. Vilda, E W W. Lang posted to classification factorization geneset matrix by ptrobajo on 2008-06-18 08:41:46 as along with 2 people svozil jfr
	A gene expression bar code for microarray data. [My Copy] Nature methods, Vol. 4, No. 11. (30 November 2007), pp. 911-913. by Michael J. Zilliox, Rafael A. Irizarry posted to classification compendium microarray tissue by ptrobajo on 2008-05-15 11:45:56 as along with 4 people oelemento guhjy jfr akastrin
	Which is better for cDNA-microarray-based classification: ratios or direct intensities. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 16. (1 November 2004), pp. 2513-2520. by S. Attoor, E. R. Dougherty, Y. Chen, M. L. Bittner, J. M. Trent posted to classification herman microarray ratio by ptrobajo on 2008-04-29 21:24:47 as along with 1 person talponer
	Comparing the characteristics of gene expression profiles derived by univariate and multivariate classification methods. [My Copy] Statistical applications in genetics and molecular biology, Vol. 7 (2008) by M. Zucknick, S. Richardson, E. A. Stronach posted to classification emiel feature herman microarray selection by ptrobajo on 2008-04-29 21:13:33 as along with 1 person pk506
	Calculating confidence intervals for prediction error in microarray classification using resampling. [My Copy] Statistical applications in genetics and molecular biology, Vol. 7, No. 1. (2008) by Wenyu Jiang, Sudhir Varma, Richard Simon posted to classification confidence herman interval microarray by ptrobajo on 2008-04-29 21:10:47 as along with 1 person srp33
	Incorporating prior knowledge of gene functional groups into regularized discriminant analysis of microarray data [My Copy] Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3170-3177. by Feng Tai, Wei Pan posted to classification geneset regularization pathway by ptrobajo on 2008-03-31 00:00:17 as along with 1 person guhjy
	Pathway analysis using random forests classification and regression [My Copy] Bioinformatics, Vol. 22, No. 16. (15 August 2006), pp. 2028-2036. by Herbert Pang, Aiping Lin, Matthew Holford, et al.Bradley E. Enerson, Bin Lu, Michael P. Lawton, Eugenia Floyd, Hongyu Zhao posted to classification forest geneset random pathway by ptrobajo on 2008-03-30 23:48:11 as along with 8 people and 2 groups ipark-kaist zufar shreyas_k jfr tabu ealloza giovanni AlexanderPico BioinfoCIPF GeschwindLab

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network	153
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combinatorics	1
community	1
completeness	1
complex	1
compound	1
connection	1
conservation	1
conserved	1
constraint	1
context	1
context-specific	1
covariate	1
crm	1
crohn	1
curation	1
cytokine	1
cytoscape	1
dave	1
decision	1
deletions	1
detection	1
dictionary	1
diet	1
dietary	1
dimension	1
direct	1
dirichlet	1
discriminant	1
discriminatory	1
disorder	1
efficient	1
egfr	1
eigengene	1
element	1
elementary	1
em	1
e-map	1
empirical	1
endocytosis	1
ensemble	1
er	1
error	1
ethics	1
eukaryote	1
exon	1
expectation	1
experiment	1
fatty	1
feedback	1
flux	1
fly	1
focusing	1
fto	1
fuzzy	1
gametogenesis	1
gapdh	1
gastric	1
gaussian	1
gel	1
genomic	1
genomics	1
geometric	1
gerben	1
glioma	1
global	1
glucose	1
glucosykceramide	1
grammer	1
grid	1
groningen	1
group	1
gui	1
hapmap	1
heterogeneity	1
hexamer	1
hidden	1
hierarchy	1
histone	1
hmm	1
hnf	1
hub	1
humna	1
hypergraph	1
identifier	1
imaging	1
inbred_strains	1
individual	1
ineractome	1
insulin_resistance	1
interferon	1
intrinsic	1
islet	1
isoelectric	1
item	1
jamboree	1
joint	1
juvenile	1
kholodenko	1
kidney	1
laplacian	1
laser	1
learning	1
level	1
ligand	1
line	1
linear	1
literature	1
local	1
logic	1
lps	1
lung	1
lupus	1
macaques	1
machine	1
mammalian	1
maqc	1
markov	1
matching	1
maximization	1
measure	1
mechanistic	1
metabolite	1

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