ptrobajo's gene [80 articles] Export

Recent papers added to ptrobajo's library classified by the tag gene. You can also see everyone's gene.

	Repeated observation of breast tumor subtypes in independent gene expression data sets [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 14. (8 July 2003), pp. 8418-8423. by Therese SÃ¸rlie, Robert Tibshirani, Joel Parker, et al.Trevor Hastie, J. S. Marron, Andrew Nobel, Shibing Deng, Hilde Johnsen, Robert Pesich, Stephanie Geisler, Janos Demeter, Charles M. Perou, Per E. LÃ¸nning, Patrick O. Brown, Anne-Lise BÃ¸rresen-Dale, David Botstein posted to subtype intrinsic gene cancer breast by ptrobajo on 2009-11-26 10:41:40 as along with 5 people ipark-kaist Zephyrus jfr jo_davies frohike
	Statistical methods for gene set co-expression analysis [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2780-2786. by YounJeong Choi, Christina Kendziorski posted to set milka gene differential diabetes co-expression by ptrobajo on 2009-11-02 10:44:17 as along with 7 people and 1 group jperkins natstreet heliopais dolchan zufar rdiaz neils Orengo Group Journal Picks
	Harnessing gene expression to identify the genetic basis of drug resistance [My Copy] Molecular Systems Biology, Vol. 5 (13 October 2009) by Bo-Juen Chen, Helen C. Causton, Denesy Mancenido, Noel L. Goddard, Ethan O. Perlstein, Dana Pe'er posted to yeast resistance phenotype genotype gene expression drug causal by ptrobajo on 2009-10-14 21:06:11 as along with 4 people dswan ashishanand phoenixzxl frohike
	The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes. [My Copy] Genome research, Vol. 19, No. 7. (4 July 2009), pp. 1316-1323. by Kim D. Pruitt, Jennifer Harrow, Rachel A. Harte, et al.Craig Wallin, Mark Diekhans, Donna R. Maglott, Steve Searle, Catherine M. Farrell, Jane E. Loveland, Barbara J. Ruef, Elizabeth Hart, Marie-Marthe M. Suner, Melissa J. Landrum, Bronwen Aken, Sarah Ayling, Robert Baertsch, Julio Fernandez-Banet, Joshua L. Cherry, Val Curwen, Michael Dicuccio, Manolis Kellis, Jennifer Lee, Michael F. Lin, Michael Schuster, Andrew Shkeda, Clara Amid, Garth Brown, Oksana Dukhanina, Adam Frankish, Jennifer Hart, Bonnie L. Maidak, Jonathan Mudge, Michael R. Murphy, Terence Murphy, Jeena Rajan, Bhanu Rajput, Lillian D. Riddick, Catherine Snow, Charles Steward, David Webb, Janet A. Weber, Laurens Wilming, Wenyu Wu, Ewan Birney, David Haussler, Tim Hubbard, James Ostell, Richard Durbin, David Lipman posted to protein mouse human gene cross-species consensus coding by ptrobajo on 2009-10-14 20:45:28 as along with 4 people and 1 group megraw timhubbard idonaldson ppgardne Journal picks
	Identification of genes involved in the same pathways using a Hidden Markov Model-based approach [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2945-2954. by Alexander Senf, Xue-wen Chen posted to pathway missing miranda microarray hmm gene by ptrobajo on 2009-10-12 13:24:11 as along with 2 people and 1 group poirel TRHvidsten Orengo Group Journal Picks
	Capturing Heterogeneity in Gene Expression Studies by Surrogate Variable Analysis [My Copy] PLoS Genet, Vol. 3, No. 9. (28 September 2007), e161. by Jeffrey T. Leek, John D. Storey posted to microarray heterogeneity gene expression covariate by ptrobajo on 2009-09-17 21:39:15 as along with 5 people greg engelhardt jfr lp2 guhjy
	A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans. [My Copy] Nature genetics, Vol. 40, No. 2. (27 February 2008), pp. 181-188. by Insuk Lee, Ben Lehner, Catriona Crombie, Wendy Wong, Andrew G. Fraser, Edward M. Marcotte posted to phenotype perturbation network gene celegans by ptrobajo on 2009-09-17 15:30:19 as along with 16 people and 1 group bertelsen thegoose2 AnzaA pegwang koller oryadna tharris guhjy tmmurali balicea capitall roys jiny kintoki meiklej jfr C. elegans / WormBase
	Microarray based diagnosis profits from better documentation of gene expression signatures. [My Copy] PLoS computational biology, Vol. 4, No. 2. (1 February 2008), e22. by Dennis Kostka, Rainer Spang posted to signature microarray gene expression diagnosis annotation by ptrobajo on 2009-09-17 15:12:15 as along with 2 people jfr giovanni
	Analyzing gene expression data in terms of gene sets: methodological issues [My Copy] Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 980-987. by Jelle J. Goeman, Peter Buhlmann posted to review geneset gene expression by ptrobajo on 2009-09-17 14:56:57 as along with 19 people and 3 groups hzoltan zufar srp33 bertelsen jperkins VGreiff tonamswish ipark-kaist aramesh2 ydhwang shikin raiyar ghattem jfr ealloza shigepong heliopais guhjy diging_data SIMR bioinformatics BioinfoCIPF BTS-PT-AS-CS
	Gene expression signatures, clinicopathological features, and individualized therapy in breast cancer. [My Copy] JAMA : the journal of the American Medical Association, Vol. 299, No. 13. (2 April 2008), pp. 1574-1587. by Chaitanya R. Acharya, David S. Hsu, Carey K. Anders, et al.Ariel Anguiano, Kelly H. Salter, Kelli S. Walters, Richard C. Redman, Sascha A. Tuchman, Cynthia A. Moylan, Sayan Mukherjee, William T. Barry, Holly K. Dressman, Geoffrey S. Ginsburg, Kelly P. Marcom, Katherine S. Garman, Gary H. Lyman, Joseph R. Nevins, Anil Potti posted to therapy signature gene expression cancer by ptrobajo on 2009-09-17 10:38:35 as along with 4 people bertelsen Zephyrus jfr guhjy
	Exploring the functional landscape of gene expression: directed search of large microarray compendia. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 20. (15 October 2007), pp. 2692-2699. by Matthew A. Hibbs, David C. Hess, Chad L. Myers, Curtis Huttenhower, Kai Li, Olga G. Troyanskaya posted to query gene expression compendium by ptrobajo on 2009-09-17 10:21:34 as along with 5 people and 1 group thegoose2 tharris guhjy tmmurali rdiaz Bioinformatics
	A gene expression network model of type 2 diabetes links cell cycle regulation in islets with diabetes susceptibility. [My Copy] Genome research, Vol. 18, No. 5. (17 May 2008), pp. 706-716. by Mark P. Keller, YounJeong Choi, Ping Wang, et al.Dawn Belt B. Davis, Mary E. Rabaglia, Angie T. Oler, Donald S. Stapleton, Carmen Argmann, Kathy L. Schueler, Steve Edwards, H. Adam Steinberg, Elias Chaibub Neto, Robert Kleinhanz, Scott Turner, Marc K. Hellerstein, Eric E. Schadt, Brian S. Yandell, Christina Kendziorski, Alan D. Attie posted to tissue network milka islet gene expression diabetes by ptrobajo on 2009-09-17 10:18:26 as along with 4 people druvus brianb frohike caseybrown
	A novel stepwise analysis procedure of genome-wide expression profiles identifies transcript signatures of thiamine genes as classifiers of mitochondrial mutants. [My Copy] Yeast (Chichester, England), Vol. 25, No. 2. (February 2008), pp. 129-140. by L. M. Eijssen, P. J. Lindsey, R. Peeters, et al.R. L. Westra, R. G. van Eijsden, M. Bolotin-Fukuhara, H. J. Smeets, R. F. Vlietinck posted to protein nazanin mutant mitochondrial knockout gene function expression by ptrobajo on 2009-09-17 09:46:03 as
	Integration of biological networks and gene expression data using Cytoscape. [My Copy] Nature protocols, Vol. 2, No. 10. (27 September 2007), pp. 2366-2382. by Melissa S. Cline, Michael Smoot, Ethan Cerami, et al.Allan Kuchinsky, Nerius Landys, Chris Workman, Rowan Christmas, Iliana Avila-Campilo, Michael Creech, Benjamin Gross, Kristina Hanspers, Ruth Isserlin, Ryan Kelley, Sarah Killcoyne, Samad Lotia, Steven Maere, John Morris, Keiichiro Ono, Vuk Pavlovic, Alexander R. Pico, Aditya Vailaya, Peng-Liang L. Wang, Annette Adler, Bruce R. Conklin, Leroy Hood, Martin Kuiper, Chris Sander, Ilya Schmulevich, Benno Schwikowski, Guy J. Warner, Trey Ideker, Gary D. Bader posted to network gene expression education cytoscape by ptrobajo on 2009-09-17 09:34:30 as along with 19 people and 1 group daveGerrard greg badi tonamswish daforerog bertelsen Cortel cswinburne giovenko isimpson emmackinnon yaredo Stew guhjy jfr shikin shung thomaskelder AlexanderPico GeneGo
	Simplified ontologies allowing comparison of developmental mammalian gene expression [My Copy] Genome Biology, Vol. 8, No. 10. (25 October 2007), R229. by Adele Kruger, Oliver Hofmann, Piero Carninci, Yoshihide Hayashizaki, Winston Hide posted to ontology gene expression cross-species by ptrobajo on 2009-09-13 20:04:54 as along with 2 people annacarina07 hpaces
	Supervised reconstruction of biological networks with local models [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i57-65. by Kevin Bleakley, Gerard Biau, Jean-Philippe Vert posted to network model missing miranda local inference gene by ptrobajo on 2009-09-12 22:07:57 as along with 3 people seb1 anf shigepong
	Protein network inference from multiple genomic data: a supervised approach. [My Copy] Bioinformatics (Oxford, England), Vol. 20 Suppl 1 (4 August 2004) by Y. Yamanishi, J-P P. Vert, M. Kanehisa posted to supervised network missing miranda kernel integration inference gene data by ptrobajo on 2009-09-12 22:01:34 as along with 3 people jfr bioinfo iris_2001
	Mapping Gene Associations in Human Mitochondria using Clinical Disease Phenotypes [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (24 April 2009), e1000374. by Curt Scharfe, Henry H. Lu, Jutta K. Neuenburg, et al.Edward A. Allen, Guan-Cheng Li, Thomas Klopstock, Tina M. Cowan, Gregory M. Enns, Ronald W. Davis posted to phenotype mitochondrial gene disease by ptrobajo on 2009-09-11 21:37:10 as along with 2 people guhjy raiyar
	GEM-TREND: a web tool for gene expression data mining toward relevant network discovery. [My Copy] BMC genomics, Vol. 10, No. 1. (3 September 2009), 411. by Chunlai Feng, Michihiro Araki, Ryo Kunimoto, et al.Akiko Tamon, Hiroki Makiguchi, Satoshi Niijima, Gozoh Tsujimoto, Yasushi Okuno posted to query network mining geo gene expression compendium by ptrobajo on 2009-09-11 20:24:05 as along with 5 people and 1 group daforerog pengchy dswan sotacam barriot Bioinformatics
	From gene expression to gene regulatory networks in Arabidopsis thaliana [My Copy] BMC Systems Biology, Vol. 3, No. 1. (3 September 2009), 85. by Chris Needham, Iain Manfield, Andrew Bulpitt, Philip Gilmartin, David Westhead posted to regulatory network gene compendium bayesian arabidopsis by ptrobajo on 2009-09-11 20:21:51 as along with 9 people idonaldson pengchy Borelli danmaclean TRHvidsten rmk barriot natstreet druvus
	The Gene Ontology's Reference Genome Project: A Unified Framework for Functional Annotation across Species [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (3 July 2009), e1000431. by The Reference Genome Group of the Gene Ontology Consortium posted to reference ontology genome gene cross-species by ptrobajo on 2009-09-06 21:33:29 as along with 20 people and 2 groups Zephyrus bertelsen rdiaz fgibson NickFurnham guhjy VGreiff cabbagesofdoom Keywan druvus natstreet gjuggler biomcgary polivares tfuji dswan kiekyon TRHvidsten djkt daforerog Bioinformatics Journal picks
	A Computational Screen for Regulators of Oxidative Phosphorylation Implicates SLIRP in Mitochondrial RNA Homeostasis [My Copy] PLoS Genet, Vol. 5, No. 8. (14 August 2009), e1000590. by Joshua M. Baughman, Roland Nilsson, Vishal M. Gohil, Daniel H. Arlow, Zareen Gauhar, Vamsi K. Mootha posted to transcription phosphorylaytion oxidative mitochondrial gene factor expression compendium by ptrobajo on 2009-09-06 20:37:50 as
	Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production. [My Copy] PLoS computational biology, Vol. 5, No. 8. (28 August 2009), e1000489. by Caroline Colijn, Aaron Brandes, Jeremy Zucker, et al.Desmond S. Lun, Brian Weiner, Maha R. Farhat, Tan-Yun Y. Cheng, D. Branch Moody, Megan Murray, James E. Galagan posted to network miranda metabolic gene flux expression by ptrobajo on 2009-09-04 21:24:51 as along with 1 person JeremyZucker
	MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (1 September 2009), 274. by Torsten Blum, Sebastian Briesemeister, Oliver Kohlbacher posted to svm protein phylogeny ontology nazanin localization gene by ptrobajo on 2009-09-04 21:00:10 as along with 1 person operon
	Reduction of colonic inflammation in HLA-B27 transgenic rats by feeding Marie Ménard apples, rich in polyphenols. [My Copy] The British journal of nutrition (22 July 2009), pp. 1-9. by Cinzia Castagnini, Cristina Luceri, Simona Toti, et al.Elisabetta Bigagli, Giovanna Caderni, Angelo P. Femia, Lisa Giovannelli, Maura Lodovici, Vanessa Pitozzi, Maddalena Salvadori, Luca Messerini, Rocio Martin, Erwin G. Zoetendal, Stan Gaj, Lars Eijssen, Chris T. Evelo, Catherine M. Renard, Alain Baron, Piero Dolara posted to gene expression biorange-matching by ptrobajo on 2009-08-27 09:18:24 as
	An integrated bioinformatics approach to improve two-color microarray quality-control: impact on biological conclusions. [My Copy] Genes & nutrition, Vol. 4, No. 2. (June 2009), pp. 123-127. by Rachel I. van Haaften, Cristina Luceri, Arie van Erk, Chris T. Evelo posted to gene expression biorange-matching by ptrobajo on 2009-08-27 09:10:07 as along with 2 people and 1 group shikin guhjy BiGCaT Bioinformatics
	Suppression of inflammatory signaling in monocytes from patients with coronary artery disease. [My Copy] Journal of molecular and cellular cardiology, Vol. 46, No. 2. (February 2009), pp. 177-185. by Stephan H. Schirmer, Joost O. Fledderus, Anja M. van der Laan, et al.Tineke C. van der Pouw-Kraan, Perry D. Moerland, Oscar L. Volger, Josefien M. Baggen, Michael Böhm, Jan J. Piek, Anton J. Horrevoets, Niels van Royen posted to pathway gene expression biorange-matching by ptrobajo on 2009-08-27 08:55:29 as
	Analysis of gene expression identifies differentially expressed genes and pathways associated with lymphatic dissemination in patients with adenocarcinoma of the esophagus. [My Copy] Annals of surgical oncology, Vol. 15, No. 12. (1 December 2008), pp. 3459-3470. by S. M. Lagarde, P. E. Ver Loren van Themaat, P. D. Moerland, et al.L. A. Gilhuijs-Pederson, F. J. Ten Kate, P. H. Reitsma, A. H. van Kampen, A. H. Zwinderman, F. Baas, J. J. van Lanschot posted to pathway gene expression biorange-matching by ptrobajo on 2009-08-27 08:54:32 as
	Max-margin Classification of Data with Absent Features [My Copy] Journal of Machine Learning Research, Vol. 9 (January 2008), pp. 1-21. by Gal Chechik, Geremy Heitz, Gal Elidan, Pieter Abbeel, Daphne Koller posted to gene metabolic miranda missing network svm by ptrobajo on 2009-06-22 22:15:07 as along with 3 people shpigi luispedro sdvillal
	Optimization based automated curation of metabolic reconstructions [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (20 June 2007), 212. by Vinay S. Kumar, Madhukar Dasika, Costas Maranas posted to gene metabolic miranda missing network optimization by ptrobajo on 2009-06-22 21:59:43 as along with 2 people vpenelle JeremyZucker
	Gene expression signatures that predict radiation exposure in mice and humans. [My Copy] PLoS medicine, Vol. 4, No. 4. (3 April 2007), e106. by Holly K. Dressman, Garrett G. Muramoto, Nelson J. Chao, et al.Sarah Meadows, Dawn Marshall, Geoffrey S. Ginsburg, Joseph R. Nevins, John P. Chute posted to cross-species expression gene lukas radiation by ptrobajo on 2009-06-15 08:57:04 as
	Gene Expression Signatures of Radiation Response Are Specific, Durable and Accurate in Mice and Humans [My Copy] PLoS ONE, Vol. 3, No. 4. (2 April 2008), e1912. by Sarah K. Meadows, Holly K. Dressman, Garrett G. Muramoto, et al.Heather Himburg, Alice Salter, Zhengzheng Wei, Geoff Ginsburg, Nelson J. Chao, Joseph R. Nevins, John P. Chute posted to cross-species expression gene lukas radiation signature by ptrobajo on 2009-06-15 08:52:51 as
	Uncovering a Macrophage Transcriptional Program by Integrating Evidence from Motif Scanning and Expression Dynamics [My Copy] PLoS Comput Biol, Vol. 4, No. 3. (21 March 2008), e1000021. by Stephen A. Ramsey, Sandy L. Klemm, Daniel E. Zak, et al.Kathleen A. Kennedy, Vesteinn Thorsson, Bin Li, Mark Gilchrist, Elizabeth S. Gold, Carrie D. Johnson, Vladimir Litvak, Garnet Navarro, Jared C. Roach, Carrie M. Rosenberger, Alistair G. Rust, Natalya Yudkovsky, Alan Aderem, Ilya Shmulevich posted to expression factor gene macrophage series stephan time transcription by ptrobajo on 2009-06-09 12:03:04 as along with 3 people and 1 group nicholasflann isimpson talponer Jarman Lab
	Comparative analysis indicates regulatory neofunctionalization of yeast duplicates [My Copy] Genome Biology, Vol. 8, No. 4. (05 April 2007), R50. by Itay Tirosh, Naama Barkai posted to correlation cross-species expression gene by ptrobajo on 2008-12-04 17:27:11 as along with 5 people and 2 groups azazello adepace stajich cisevol ajpowell EisenLab cis-regulatory-evolution
	Chemogenomic profiling on a genome-wide scale using reverse-engineered gene networks [My Copy] Nature Biotechnology, Vol. 23, No. 3. (04 March 2005), pp. 377-383. by Diego di Bernardo, Michael J. Thompson, Timothy S. Gardner, et al.Sarah E. Chobot, Erin L. Eastwood, Andrew P. Wojtovich, Sean J. Elliott, Scott E. Schaus, James J. Collins posted to action drug gene mode network of target regulatory by ptrobajo on 2008-12-01 09:39:52 as along with 11 people and 2 groups edwardmorrissey mingzhi VGreiff provero rklancer snuppepuppan kentsis mjt rhem1224 balajis jayster4 TCR_Signaling SysbioMPI-TCells
	Evidence for a role of developmental genes in the origin of obesity and body fat distribution. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 17. (25 April 2006), pp. 6676-6681. by S. Gesta, M. Blüher, Y. Yamamoto, et al.A. W. Norris, J. Berndt, S. Kralisch, J. Boucher, C. Lewis, C. R. Kahn posted to cross-species expression fat gene human mouse obesity by ptrobajo on 2008-11-24 20:41:57 as along with 2 people xinhonglim cybaer1
	De-regulation of common housekeeping genes in hepatocellular carcinoma [My Copy] BMC Genomics, Vol. 8 (18 July 2007), 243. by Samuel Waxman, Elisa Wurmbach posted to housekeeping milka gene by ptrobajo on 2008-11-20 08:40:07 as
	Multi-objective evolutionary biclustering of gene expression data [My Copy] Pattern Recognition, Vol. 39, No. 12. (December 2006), pp. 2464-2477. by S. Mitra, H. Banka posted to biclustering evolutionary expression gene herman by ptrobajo on 2008-11-20 08:38:53 as
	Identifying differential correlation in gene/pathway combinations [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (18 November 2008), 488. by Rosemary Braun, Leslie Cope, Giovanni Parmigiani posted to differential expression gene geneset pathway by ptrobajo on 2008-11-19 08:57:29 as along with 11 people dolchan dipenps zufar jfr shikin mdstobbe imina rdiaz renatomilani lptolik barriot
	Prediction of radiation sensitivity using a gene expression classifier. [My Copy] Cancer research, Vol. 65, No. 16. (15 August 2005), pp. 7169-7176. by J. F. Torres-Roca, S. Eschrich, H. Zhao, et al.G. Bloom, J. Sung, S. McCarthy, A. B. Cantor, A. Scuto, C. Li, S. Zhang, R. Jove, T. Yeatman posted to expression gene lukas radiation regression sensitivity by ptrobajo on 2008-10-30 21:23:32 as
	Key issues in conducting a meta-analysis of gene expression microarray datasets. [My Copy] PLoS medicine, Vol. 5, No. 9. (30 September 2008), e184. by Adaikalavan Ramasamy, Adrian Mondry, Chris C. Holmes, Douglas G. Altman posted to expression gene meta-analysis review by ptrobajo on 2008-10-29 21:30:32 as along with 11 people and 1 group zufar greg frohike lwaldron daforerog Zephyrus shikin druvus guhjy aviad_work jfr Roswell Cancer Crosstalk
	Improving Subcellular Localization Prediction using Text Classification and the Gene Ontology [My Copy] Bioinformatics (26 August 2008), btn463. by Alona Fyshe, Yifeng Liu, Duane Szafron, Russ Greiner, Paul Lu posted to gene localization mining nazanin ontology protein text by ptrobajo on 2008-10-26 20:53:36 as along with 3 people guhjy grahamc phoenixzxl
	BioVenn - a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams [My Copy] BMC Genomics, Vol. 9, No. 1. (2008) by Tim Hulsen, Jacob de Vlieg, Wynand Alkema posted to gene list software venn by ptrobajo on 2008-10-26 20:22:30 as along with 21 people and 2 groups n00c jfr lscarafia jmeppley hessec GustavoLacerda stajich dswan polivares egonw guhjy jameswasmuth lptolik msampson pengchy natstreet druvus barriot Zephyrus cisevol thulsen Mycology BergmanLab
	Coordination of Growth Rate, Cell Cycle, Stress Response, and Metabolic Activity in Yeast. [My Copy] Mol Biol Cell (24 October 2007) by Matthew J J. Brauer, Curtis Huttenhower, Edoardo M M. Airoldi, et al.Rachel Rosenstein, John C C. Matese, David Gresham, Viktor M M. Boer, Olga G G. Troyanskaya, David Botstein posted to expression gene nazanin peroxisome yeast by ptrobajo on 2008-10-17 21:36:12 as along with 2 people dbenn roys
	Dissection of transient oxidative stress response in Saccharomyces cerevisiae by using DNA microarrays. [My Copy] Molecular biology of the cell, Vol. 13, No. 8. (August 2002), pp. 2783-2794. by M. G. Koerkamp, M. Rep, H. J. Bussemaker, et al.G. P. Hardy, A. Mul, K. Piekarska, C. A. Szigyarto, J. M. De Mattos, H. F. Tabak posted to expression gene microarray nazanin peroxisome yeast by ptrobajo on 2008-10-17 21:22:04 as
	Genome-wide analysis of signaling networks regulating fatty acid-induced gene expression and organelle biogenesis. [My Copy] The Journal of cell biology, Vol. 181, No. 2. (21 April 2008), pp. 281-292. by R. A. Saleem, B. Knoblach, F. D. Mast, et al.J. J. Smith, J. Boyle, C. M. Dobson, R. Long-O'Donnell, R. A. Rachubinski, J. D. Aitchison posted to biogenesis expression gene nazanin peroxisome signaling yeast by ptrobajo on 2008-10-17 21:16:21 as
	Transcriptome profiling to identify genes involved in peroxisome assembly and function. [My Copy] The Journal of cell biology, Vol. 158, No. 2. (22 July 2002), pp. 259-271. by J. J. Smith, M. Marelli, R. H. Christmas, et al.F. J. Vizeacoumar, D. J. Dilworth, T. Ideker, T. Galitski, K. Dimitrov, R. A. Rachubinski, J. D. Aitchison posted to expression gene nazanin peroxisome yeast by ptrobajo on 2008-10-17 21:09:35 as
	A critical assessment of Mus musculus gene function prediction using integrated genomic evidence [My Copy] Genome Biology, Vol. 9, No. Suppl 1. (2008), S2. by Lourdes P. Castillo, Murat Tasan, Chad Myers, et al.Hyunju Lee, Trupti Joshi, Chao Zhang, Yuanfang Guan, Michele Leone, Andrea Pagnani, Wan Kim, Chase Krumpelman, Weidong Tian, Guillaume Obozinski, Yanjun Qi, Sara Mostafavi, Guan Lin, Gabriel Berriz, Francis Gibbons, Gert Lanckriet, Jian Qiu, Charles Grant, Zafer Barutcuoglu, David Hill, David W. Farley, Chris Grouios, Debajyoti Ray, Judith Blake, Minghua Deng, Michael Jordan, William Noble, Quaid Morris, Judith K. Seetharaman, Ziv B. Joseph, Ting Chen, Fengzhu Sun, Olga Troyanskaya, Edward Marcotte, Dong Xu, Timothy Hughes, Frederick Roth posted to community function gene integration mouse prediction by ptrobajo on 2008-10-17 20:48:57 as along with 6 people phoenixzxl saket carlk kgutwin guhjy aconesa
	Predicting expression patterns from regulatory sequence in Drosophila segmentation [My Copy] Nature, Vol. 451, No. 7178. (02 January 2008), pp. 535-540. by Eran Segal, Tali Raveh-Sadka, Mark Schroeder, Ulrich Unnerstall, Ulrike Gaul posted to expression fruitfly gene pattern regulatory by ptrobajo on 2008-10-17 14:20:39 as along with 19 people and 2 groups TRHvidsten daveGerrard koller dlmace isimpson dakelley tmmurali eckart_bindewald djkt bootsy biomcgary idonaldson roys emptyhb pkharchenko meiklej jrest tresch siebert BergmanLab TranscriptionalRegulationWithThermodynamicModels
	Decoding global gene expression programs in liver cancer by noninvasive imaging [My Copy] Nat Biotech, Vol. 25, No. 6. (21 June 2007), pp. 675-680. by Eran Segal, Claude B. Sirlin, Clara Ooi, et al.Adam S. Adler, Jeremy Gollub, Xin Chen, Bryan K. Chan, George R. Matcuk, Christopher T. Barry, Howard Y. Chang, Michael D. Kuo posted to cls-anton expression gene imaging module network by ptrobajo on 2008-10-17 14:19:45 as along with 1 person haiyeong

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network	153
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expression	90
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mouse	50
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herman	28
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proteomics	25
wouter	25
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seldi	24
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dragan	21
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function	18
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emiel	15
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milka	15
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biology	14
kegg	14
affymetrix	13
illumina	13
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knockout	13
sara	13
systems	13
analysis	12
bayesian	12
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graph	11
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snp	11
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design	10
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missing	10
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semi-supervised	6
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correlation	5
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ecoli	4
effect	4
genotype	4
hybridization	4
identification	4
least	4
logical	4
lukas	4
mixture	4
mrna	4
mutation	4
nfkb	4
phosphorylaytion	4
ppar	4
prediction	4
programming	4
promoter	4
pts1	4
quantitative	4
radiation	4
sample	4
set	4
size	4
squares	4
stem	4
subgraph	4
supervised	4
syndrome	4
test	4
tool	4
transcriptomics	4
validation	4
aracne	3
benchmark	3
bioconductor	3
comparative	3
consensus	3
control	3
cross-validation	3
disease-specific	3
fasting	3
forest	3
genetics	3
halleri	3
heterogeneous	3
housekeeping	3
immunity	3
inflammation	3
insulin	3
kinomics	3
liver	3
man	3
mapk	3
matrix	3
metabolomics	3
metal	3
mode	3
motifs	3
multivariate	3
niek	3
nmf	3
permutation	3
prioritization	3
probe	3
quality	3
ranking	3
reference	3
regression	3
sequencing	3
series	3
stability	3
statistics	3
stephan	3
structure	3
subtype	3
thaliana	3
time	3
tissue-specific	3
topology	3
trait	3
web	3
action	2
activity	2
age	2
amc	2
array	2
assocation	2
asthma	2
atherosclerosis	2
background	2
batch	2
biogenesis	2
bioinformatics	2
bypass	2
canonical	2
carsten	2
celegans	2
clinical	2
clique	2
combination	2
combinatorial	2
concept	2
condition	2
confidence	2
connectivity	2
copy	2
correction	2
cross-hybridization	2
cyc	2
deconvolution	2
diagnosis	2
dna	2
domain	2
enzyme	2
epistasis	2
epxression	2
e-qtl	2
evolution	2
evolutionary	2
fat	2
fdr	2
frequent	2
fruitfly	2
go	2
gsea	2
guidelines	2
hierarchical	2
homology	2
hotelling	2
immune	2
immunology	2
interactome	2
interpretation	2
interval	2
itemset	2
kinetic	2
lasso	2
lda	2
list	2
macrophage	2
measurement	2
metagene	2
metastasis	2
method	2
methodology	2
miape	2
micorarray	2
mirna	2
molecular	2
molecule	2
mutant	2
next-generation	2
number	2
organization	2
ovarian	2
overlap	2
pathvisio	2
pca	2
peptide	2
phenome	2
plant	2
pooling	2
prior	2
protocol	2
reaction	2
reannotation	2
reduction	2
resistance	2
ribosomal	2
rnai	2
rodent	2
rosetta	2
r-package	2
service	2
similarity	2
small	2
spike-in	2
standards	2
statistical	2
subcellular	2
synthetic	2
syntren	2
system	2
testing	2
tiling	2
transitive	2
unlabeled	2
variation	2
wikipathways	2
zebrafish	2
70-gene	1
abundance	1
acgh	1
acid	1
adaptive	1
adipocyte	1
adult	1
aging	1
algorithm	1
alternating	1
amplification	1
angiogenic	1
animal	1
anova	1
anti-correlation	1
anton-cls	1
application	1
approximation	1
arrayexpress	1
atlas	1
attribute	1
backpropagation	1
bayes	1
bicluster	1
biclustering	1
bigg	1
bimodality	1
biomart	1
biopax	1
blast	1
blosum62	1
cadmium	1
cage	1
candidate	1
capture	1
cardiac	1
case-control	1
causal	1
cervical	1
chemogenomics	1
chemosensitivity	1
chimera	1
chimpanzee	1
chip-chip	1
chip-seq	1
chromosome	1
classificatiion	1
cluster	1
cnv	1
code	1
coding	1
coevolution	1
co-expression	1
collateral	1
combinatorics	1
community	1
completeness	1
complex	1
compound	1
connection	1
conservation	1
conserved	1
constraint	1
context	1
context-specific	1
covariate	1
crm	1
crohn	1
curation	1
cytokine	1
cytoscape	1
dave	1
decision	1
deletions	1
detection	1
dictionary	1
diet	1
dietary	1
dimension	1
direct	1
dirichlet	1
discriminant	1
discriminatory	1
disorder	1
efficient	1
egfr	1
eigengene	1
element	1
elementary	1
em	1
e-map	1
empirical	1
endocytosis	1
ensemble	1
er	1
error	1
ethics	1
eukaryote	1
exon	1
expectation	1
experiment	1
fatty	1
feedback	1
flux	1
fly	1
focusing	1
fto	1
fuzzy	1
gametogenesis	1
gapdh	1
gastric	1
gaussian	1
gel	1
genomic	1
genomics	1
geometric	1
gerben	1
glioma	1
global	1
glucose	1
glucosykceramide	1
grammer	1
grid	1
groningen	1
group	1
gui	1
hapmap	1
heterogeneity	1
hexamer	1
hidden	1
hierarchy	1
histone	1
hmm	1
hnf	1
hub	1
humna	1
hypergraph	1
identifier	1
imaging	1
inbred_strains	1
individual	1
ineractome	1
insulin_resistance	1
interferon	1
intrinsic	1
islet	1
isoelectric	1
item	1
jamboree	1
joint	1
juvenile	1
kholodenko	1
kidney	1
laplacian	1
laser	1
learning	1
level	1
ligand	1
line	1
linear	1
literature	1
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logic	1
lps	1
lung	1
lupus	1
macaques	1
machine	1
mammalian	1
maqc	1
markov	1
matching	1
maximization	1
measure	1
mechanistic	1
metabolite	1

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