ptrobajo's metabolic [37 articles] Export

Recent papers added to ptrobajo's library classified by the tag metabolic. You can also see everyone's metabolic.

	An Introduction to Metabolic Networks and Their Structural Analysis [My Copy] IEEE/ACM Transactions on Computational Biology and Bioinformatics In Computational Biology and Bioinformatics, IEEE/ACM Transactions on, Vol. 5, No. 4. (2008), pp. 594-617. by Vincent Lacroix, Ludovic Cottret, Patricia Thébault, Marie F. Sagot posted to review network miranda metabolic by ptrobajo on 2009-10-22 08:24:59 as along with 4 people cgaugain yujiangwang nsamways AbnerCYH
	The metabolic world of Escherichia coli is not small [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 6. (10 February 2004), pp. 1543-1547. by Masanori Arita posted to small-world network miranda metabolic ecoli by ptrobajo on 2009-10-21 21:02:48 as along with 11 people and 3 groups schwartzjmc camster PeterCollins riomenajang barry alexg tny azuma dylan77 Ema hryk dbk-lab structural_bioinformatics Bioinformatics
	How to identify essential genes from molecular networks? [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 102. by Gabriel D. Rio, Dirk Koschutzki, Gerardo Coello posted to yeast network miranda metabolic kegg by ptrobajo on 2009-10-14 20:35:26 as along with 7 people operon tmmurali kshameer phoenixzxl renatomilani druvus daforerog
	KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (08 October 2009), 324. by Konstantinos Moutselos, Ioannis Kanaris, Aristotelis Chatziioannou, Ilias Maglogiannis, Fragiskos Kolisis posted to network modeling miranda metabolic kegg by ptrobajo on 2009-10-12 14:54:10 as along with 8 people and 1 group tonamswish Thaverkamp sillitoe trogdor druvus dullhunk reyez renatomilani Orengo Group Journal Picks
	The Effects of Atherogenic Diet on Hepatic Gene Expression Across Mouse Strains. [My Copy] Physiological genomics (11 August 2009) by Keith R. Shockley, David Witmer, Sarah L. Burgess-Herbert, Beverly Paigen, Gary A. Churchill posted to obesity mouse metabolic disease diet br45 by ptrobajo on 2009-10-02 13:22:35 as
	A joint model of regulatory and metabolic networks [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (04 July 2006), 332. by Chen H. Yeang, Martin Vingron posted to regulatory network model metabolic joint by ptrobajo on 2009-09-17 21:26:37 as along with 6 people chasmand cgaugain schwartzjmc alexg cgaray roys
	Clique-based data mining for related genes in a biomedical database [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 205. by Tsutomu Matsunaga, Chikara Yonemori, Etsuji Tomita, Masaaki Muramatsu posted to syndrome omim metabolic disease clique by ptrobajo on 2009-09-06 21:29:07 as along with 3 people and 2 groups Effie daforerog ppgardne NaCTeM Journal picks
	A Mapping of Drug Space from the Viewpoint of Small Molecule Metabolism [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (21 August 2009), e1000474. by James C. Adams, Michael J. Keiser, Li Basuino, et al.Henry F. Chambers, Deok-Sun Lee, Olaf G. Wiest, Patricia C. Babbitt posted to network metabolic enzyme drug by ptrobajo on 2009-09-06 20:24:52 as along with 8 people and 1 group sobolevnrm nickolay klexa bdessailly pablocarb biomcgary reyez thomaskelder Orengo Group Journal Picks
	T-ing up inflammation in fat. [My Copy] Nature medicine, Vol. 15, No. 8. (August 2009), pp. 846-847. by Carey N. Lumeng, Ivan Maillard, Alan R. Saltiel posted to syndrome metabolic inflammation fat br45 by ptrobajo on 2009-09-06 20:13:25 as
	Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production. [My Copy] PLoS computational biology, Vol. 5, No. 8. (28 August 2009), e1000489. by Caroline Colijn, Aaron Brandes, Jeremy Zucker, et al.Desmond S. Lun, Brian Weiner, Maha R. Farhat, Tan-Yun Y. Cheng, D. Branch Moody, Megan Murray, James E. Galagan posted to network miranda metabolic gene flux expression by ptrobajo on 2009-09-04 21:24:51 as along with 1 person JeremyZucker
	Pathway databases and tools for their exploitation: benefits, current limitations and challenges [My Copy] Molecular Systems Biology, Vol. 5 (28 July 2009) by Anna Bauer-Mehren, Laura I. Furlong, Ferran Sanz posted to pathway miranda metabolic database by ptrobajo on 2009-09-03 14:33:59 as along with 8 people saman_vp dullhunk thomaskelder ngehlenborg allysonlister daforerog mingzhi renatomilani
	MouseCyc: a curated biochemical pathways database for the laboratory mouse [My Copy] Genome Biology, Vol. 10, No. 8. (14 August 2009), R84. by Alexei Evsikov, Mary Dolan, Michael Genrich, Emily Patek, Carol Bult posted to mouse miranda metabolic database cyc by ptrobajo on 2009-08-31 12:37:37 as along with 2 people megraw druvus
	Metabolic pathfinding using RPAIR annotation. [My Copy] Journal of molecular biology, Vol. 388, No. 2. (1 May 2009), pp. 390-414. by Karoline Faust, Didier Croes, Jacques van Helden posted to pathway miranda metabolic kegg by ptrobajo on 2009-08-28 16:05:53 as along with 2 people Thaverkamp druvus
	KiPar, a tool for systematic information retrieval regarding parameters for kinetic modelling of yeast metabolic pathways. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 11. (1 June 2009), pp. 1404-1411. by Irena Spasic, Evangelos Simeonidis, Hanan L. Messiha, Norman W. Paton, Douglas B. Kell posted to kinetic metabolic mining miranda network text yeast by ptrobajo on 2009-07-02 15:30:58 as along with 3 people irenas mitko dullhunk
	Max-margin Classification of Data with Absent Features [My Copy] Journal of Machine Learning Research, Vol. 9 (January 2008), pp. 1-21. by Gal Chechik, Geremy Heitz, Gal Elidan, Pieter Abbeel, Daphne Koller posted to gene metabolic miranda missing network svm by ptrobajo on 2009-06-22 22:15:07 as along with 3 people shpigi luispedro sdvillal
	Optimization based automated curation of metabolic reconstructions [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (20 June 2007), 212. by Vinay S. Kumar, Madhukar Dasika, Costas Maranas posted to gene metabolic miranda missing network optimization by ptrobajo on 2009-06-22 21:59:43 as along with 2 people vpenelle JeremyZucker
	KEGG spider: interpretation of genomics data in the context of the global gene metabolic network [My Copy] Genome Biology, Vol. 9, No. 12. (2008), R179. by Alexey Antonov, Sabine Dietmann, Hans Mewes posted to kegg metabolic microarray miranda network by ptrobajo on 2009-03-24 20:45:06 as along with 14 people and 2 groups Thaverkamp cgaugain jfr bluto sylvainforet Stew Cortel Zephyrus guhjy neils cmzmasek fgibson dullhunk druvus Bioinformatics - CRUK Roswell Cancer Crosstalk
	Understanding human metabolic physiology: a genome-to-systems approach [My Copy] Trends in Biotechnology, Vol. 27, No. 1. (14 January 2009), pp. 37-44. by M. Mo, B. Palsson posted to human jamboree metabolic miranda network review by ptrobajo on 2009-03-19 15:56:53 as along with 5 people mingzhi schwartzjmc agonzale guhjy dullhunk
	Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network [My Copy] Nature Biotechnology, Vol. 26, No. 11. (26 October 2008), pp. 1251-1259. by Gal Chechik, Eugene Oh, Oliver Rando, Jonathan Weissman, Aviv Regev, Daphne Koller posted to metabolic miranda motifs network transcription yeast by ptrobajo on 2009-01-22 21:26:45 as along with 8 people jbhiatt balabu behindtherabbit ojabado jjray renatomilani megraw neils
	It's Not How Fat You Are, It's What You Do with It That Counts [My Copy] PLoS Biology, Vol. 6, No. 9. (1 September 2008), e237. by Samuel Virtue, Antonio Vidal-Puig posted to cross-species metabolic syndrome by ptrobajo on 2008-11-07 11:41:41 as along with 2 people Marcory cybaer1
	Metabolic syndrome: from epidemiology to systems biology [My Copy] Nat Rev Genet, Vol. 9, No. 11. (November 2008), pp. 819-830. by Aldons J. Lusis, Alan D. Attie, Karen Reue posted to biology diabetes metabolic network syndrome systems by ptrobajo on 2008-10-26 20:56:31 as along with 6 people and 1 group Sonix misonneh Zephyrus omalbam guhjy fernandaleite1 R.E.A.D
	Metabolic network visualization eliminating node redundance and preserving metabolic pathways. [My Copy] BMC systems biology, Vol. 1 (2007) by R. Bourqui, L. Cottret, V. Lacroix, et al.D. Auber, P. Mary, M. F. Sagot, F. Jourdan posted to metabolic miranda network visualization pathway by ptrobajo on 2008-10-24 09:50:39 as along with 2 people ywondimu hryk
	Conservation of Expression and Sequence of Metabolic Genes Is Reflected by Activity Across Metabolic States. [My Copy] PLoS Comput Biol, Vol. 2, No. 8. (18 August 2006) by Yonatan Bilu, Tomer Shlomi, Naama Barkai, Eytan Ruppin posted to conservation expression metabolic sequence by ptrobajo on 2008-10-22 21:26:21 as along with 3 people and 2 groups JeremyZucker nickluscombe edwardmorrissey EBI-regulation MetabolicModeling
	Constraint-based functional similarity of metabolic genes: going beyond network topology [My Copy] Bioinformatics, Vol. 23, No. 16. (15 August 2007), pp. 2139-2146. by Oleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, Ron Y. Pinter posted to metabolic miranda network similarity topology by ptrobajo on 2008-10-22 21:25:20 as along with 1 person zwang
	Systematic condition-dependent annotation of metabolic genes. [My Copy] Genome research, Vol. 17, No. 11. (November 2007), pp. 1626-1633. by T. Shlomi, M. Herrgard, V. Portnoy, et al.E. Naim, B. Ø. Palsson, R. Sharan, E. Ruppin posted to annotation condition metabolic miranda by ptrobajo on 2008-10-22 21:24:42 as
	A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology [My Copy] Nat Biotech, Vol. 26, No. 10. (09 October 2008), pp. 1155-1160. by Markus J. Herrgard, Neil Swainston, Paul Dobson, et al.Warwick B. Dunn, K. Yalcin Arga, Mikko Arvas, Nils Buthgen, Simon Borger, Roeland Costenoble, Matthias Heinemann, Michael Hucka, Nicolas Le Novere, Peter Li, Wolfram Liebermeister, Monica L. Mo, Ana P. Oliveira, Dina Petranovic, Stephen Pettifer, Evangelos Simeonidis, Kieran Smallbone, Irena Spasie, Dieter Weichart, Roger Brent, David S. Broomhead, Hans V. Westerhoff, Betul Kurdar, Merja Penttila, Edda Klipp, Bernhard O. Palsson, Uwe Sauer, Stephen G. Oliver, Pedro Mendes, Jens Nielsen, Douglas B. Kell posted to biology consensus metabolic miranda network systems yeast by ptrobajo on 2008-10-10 09:48:42 as along with 22 people and 2 groups m_j pmendes windman83 jfr raiyar neilswainston irenas JeremyZucker chasmand schwartzjmc pinney pauldobson alaninmcr allysonlister zwang guhjy dbk michaelbarton neils dullhunk pengchy tmmurali MetabolicModeling BergmanLab
	A critical examination of stoichiometric and path-finding approaches to metabolic pathways [My Copy] Brief Bioinform (24 April 2008), bbn018. by Francisco J. Planes, John E. Beasley posted to graph metabolic miranda stoichiometry pathway by ptrobajo on 2008-10-08 23:25:50 as along with 5 people pablocarb lflorez guhjy renatomilani shung
	Probabilistic path ranking based on adjacent pairwise coexpression for metabolic transcripts analysis [My Copy] Bioinformatics, Vol. 24, No. 2. (15 January 2008), pp. 250-257. by Ichigaku Takigawa, Hiroshi Mamitsuka posted to coexpression metabolic network ranking by ptrobajo on 2008-08-08 15:02:58 as along with 1 person sotacam
	The implications of human metabolic network topology for disease comorbidity [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 29. (22 July 2008), pp. 9880-9885. by D. S. Lee, J. Park, K. A. Kay, N. A. Christakis, Z. N. Oltvai, A. L. BarabÃ¡si posted to bigg disease kegg metabolic miranda network by ptrobajo on 2008-07-30 10:55:24 as along with 6 people tomhebbron mingzhi sergiun klaatujohn guhjy Borelli
	Using the topology of metabolic networks to predict viability of mutant strains. [My Copy] Biophys J, Vol. 91, No. 6. (September 2006), pp. 2304-2311. by Z. Wunderlich, L. A. Mirny posted to dragan knockout metabolic miranda mutant network topology by ptrobajo on 2008-07-30 10:54:50 as along with 2 people kentsis cckan
	Thematic review series: Systems Biology Approaches to Metabolic and Cardiovascular Disorders. Reverse engineering gene networks to identify key drivers of complex disease phenotypes [My Copy] J. Lipid Res., Vol. 47, No. 12. (1 December 2006), pp. 2601-2613. by Eric E. Schadt, Pek Y. Lum posted to biology integration metabolic network systems by ptrobajo on 2008-06-20 14:01:57 as along with 4 people and 1 group flbarroso jfr giovanni jo_davies GeschwindLab
	The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli [My Copy] Nature Biotechnology, Vol. 26, No. 6. (06 June 2008), pp. 659-667. by Adam M. Feist, Bernhard O. Palsson posted to ecoli metabolic miranda reconstruction by ptrobajo on 2008-06-15 16:33:30 as along with 6 people and 2 groups eline_koers schwartzjmc lflorez fishtank michaelbarton AlexanderPico BergmanLab TNT
	metaSHARK: a WWW platform for interactive exploration of metabolic networks. [My Copy] Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006) by C. Hyland, J. W. Pinney, G. A. McConkey, D. R. Westhead posted to metabolic miranda network pathway by ptrobajo on 2008-04-29 11:07:17 as
	Metabolome Based Reaction Graphs of M. tuberculosis and M. leprae: A Comparative Network Analysis [My Copy] PLoS ONE, Vol. 2, No. 9. (2007) by K. D. Verkhedkar, K. Raman, N. R. Chandra, S. Vishveshwara posted to kegg metabolic miranda network by ptrobajo on 2008-04-05 21:16:17 as
	A network perspective on the topological importance of enzymes and their phylogenetic conservation. [My Copy] BMC bioinformatics, Vol. 8, No. 1. (2007) by Wei-chung C. Liu, Wen-hsien H. Lin, Andrew J. Davis, Ferenc Jordán, Hsih-te T. Yang, Ming-jing J. Hwang posted to kegg metabolic miranda network phylogeny topology by ptrobajo on 2008-04-05 20:55:26 as along with 5 people and 1 group pablocarb shung renatomilani jiny mdstobbe Bioinformatics
	Biosynthetic Potentials of Metabolites and Their Hierarchical Organization [My Copy] PLoS Computational Biology, Vol. 4, No. 4. (2008) by F. Matthäus, C. Salazar, O. Ebenhöh posted to compound kegg metabolic miranda network organization by ptrobajo on 2008-04-05 20:52:36 as along with 1 person Ema
	Computing Knock-Out Strategies in Metabolic Networks [My Copy] Journal of Computational Biology, Vol. 15, No. 3. (2008), pp. 259-268. by Utz-Uwe Haus, Steffen Klamt, Tamon Stephen posted to dragan elementary knockout metabolic mode network by ptrobajo on 2008-03-31 19:36:49 as along with 5 people and 1 group tmmurali balicea jiny Borelli longoka Frontiers in Diabetes and Obesity

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ptrobajo's metabolic [37 articles] Export

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