ptrobajo's microarray [119 articles] Export

Recent papers added to ptrobajo's library classified by the tag microarray. You can also see everyone's microarray.

	Alternative Splicing in the Differentiation of Human Embryonic Stem Cells into Cardiac Precursors [My Copy] PLoS Comput Biol, Vol. 5, No. 11. (6 November 2009), e1000553. by Nathan Salomonis, Brandon Nelson, Karen Vranizan, et al.Alexander R. Pico, Kristina Hanspers, Allan Kuchinsky, Linda Ta, Mark Mercola, Bruce R. Conklin posted to stem splicing mirna microarray exon cell by ptrobajo on 2009-11-20 13:53:16 as
	Illumina WG-6 BeadChip strips should be normalized separately [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 372. by Wei Shi, Ashish Banerjee, Matthew Ritchie, Steve Gerondakis, Gordon Smyth posted to normalization microarray marcel illumina by ptrobajo on 2009-11-11 20:04:55 as along with 2 people heliopais shikin
	Getting started in gene expression microarray analysis. [My Copy] PLoS computational biology, Vol. 5, No. 10. (30 October 2009), e1000543. by Donna K. Slonim, Itai Yanai posted to microarray education by ptrobajo on 2009-11-02 10:54:38 as along with 9 people and 2 groups Stew barriot laral inesdesantiago dswan iskathy Fournier34 renatomilani heliopais Bioinformatics - CRUK Bioinformatics
	SubpathwayMiner: a software package for flexible identification of pathways. [My Copy] Nucleic acids research, Vol. 37, No. 19. (25 October 2009), gkp667. by Chunquan Li, Xia Li, Yingbo Miao, et al.Qianghu Wang, Wei Jiang, Chun Xu, Jing Li, Junwei Han, Fan Zhang, Binsheng Gong, Liangde Xu posted to pathway microarray kegg enrichment by ptrobajo on 2009-10-12 14:54:36 as along with 6 people and 1 group davidalee Vincent_Rouilly irenas renatomilani brianb neils Orengo Group Journal Picks
	Identification of genes involved in the same pathways using a Hidden Markov Model-based approach [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2945-2954. by Alexander Senf, Xue-wen Chen posted to pathway missing miranda microarray hmm gene by ptrobajo on 2009-10-12 13:24:11 as along with 2 people and 1 group poirel TRHvidsten Orengo Group Journal Picks
	Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistance. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 23. (1 December 2009), pp. 3121-3127. by Peter J. Park, Sek Won W. Kong, Toma Tebaldi, Weil R. Lai, Simon Kasif, Isaac S. Kohane posted to resistance microarray insulin diabetes cross-species br45 by ptrobajo on 2009-10-02 13:20:14 as along with 4 people guhjy kshameer rdiaz thomaskelder
	MicroRNA target prediction by expression analysis of host genes [My Copy] Genome Research, Vol. 19, No. 3. (16 March 2009), pp. 481-490. by Vincenzo A. Gennarino, Marco Sardiello, Raffaella Avellino, et al.Nicola Meola, Vincenza Maselli, Santosh Anand, Luisa Cutillo, Andrea Ballabio, Sandro Banfi posted to microrna microarray expression anti-correlation by ptrobajo on 2009-09-30 21:27:09 as along with 16 people and 2 groups danaiancu gbloeb guhjy tonamswish gennarino heliopais megraw tmmurali jfr samgj valeriehilgers Zephyrus pengchy giovenko daforerog ealloza microRNA Roswell Cancer Crosstalk
	Large expression differences in genes for iron and zinc homeostasis, stress response, and lignin biosynthesis distinguish roots of Arabidopsis thaliana and the related metal hyperaccumulator Thlaspi caerulescens. [My Copy] Plant physiology, Vol. 142, No. 3. (November 2006), pp. 1127-1147. by Judith E. van de Mortel, Laia Almar Villanueva, Henk Schat, et al.Jeroen Kwekkeboom, Sean Coughlan, Perry D. Moerland, Emiel Ver Loren van Themaat, Maarten Koornneef, Mark G. Aarts posted to plant microarray metal by ptrobajo on 2009-09-29 16:15:50 as
	Muramyl dipeptide-induced differential gene expression in NOD2 mutant and wild-type Crohn's disease patient-derived dendritic cells. [My Copy] Inflammatory bowel diseases, Vol. 14, No. 2. (February 2008), pp. 186-194. by Zuzana Zelinkova, Astrid J. van Beelen, Floor de Kort, et al.Perry D. Moerland, Emiel Ver Loren van Themaat, Anje A. te Velde, Sander J. van Deventer, Esther C. de Jong, Daniel W. Hommes posted to rosetta microarray crohn by ptrobajo on 2009-09-29 16:14:31 as
	Gene expression in early stage cervical cancer. [My Copy] Gynecologic oncology, Vol. 108, No. 3. (March 2008), pp. 520-526. by Petra Biewenga, Marrije R. Buist, Perry D. Moerland, et al.Emiel Ver Loren van Themaat, Antoine H. van Kampen, Fiebo J. ten Kate, Frank Baas posted to microarray cervical cancer by ptrobajo on 2009-09-29 16:13:54 as
	Disease signatures are robust across tissues and experiments [My Copy] Molecular Systems Biology, Vol. 5 (15 September 2009) by Joel T. Dudley, Robert Tibshirani, Tarangini Deshpande, Atul J. Butte posted to tissue microarray meta-analysis disease compendium by ptrobajo on 2009-09-29 12:47:21 as along with 14 people phoenixzxl tmmurali giovanni grahamc renatomilani zufar jclau klo mingzhi ngehlenborg dswan winterschlaefer daforerog brianb
	Comparison of human and rat uterine leiomyomata: identification of a dysregulated mammalian target of rapamycin pathway. [My Copy] Cancer research, Vol. 69, No. 15. (1 August 2009), pp. 6171-6178. by Judy S. Crabtree, Scott A. Jelinsky, Heather A. Harris, et al.Sung E. Choe, Monette M. Cotreau, Michelle L. Kimberland, Ewa Wilson, Kathryn A. Saraf, Wei Liu, Adrienne S. McCampbell, Bhuvanesh Dave, Russell R. Broaddus, Eugene L. Brown, Wenling Kao, Jerauld S. Skotnicki, Magid Abou-Gharbia, Richard C. Winneker, Cheryl L. Walker posted to rat pahtway microarray human geneset cross-species by ptrobajo on 2009-09-21 22:27:22 as
	Understanding sample size: what determines the required number of microarrays for an experiment? [My Copy] Trends in plant science, Vol. 12, No. 2. (February 2007), pp. 46-50. by Tommy S. Jørstad, Mette Langaas, Atle M. Bones posted to size sample review microarray by ptrobajo on 2009-09-17 21:44:05 as along with 4 people and 1 group greg Stew guhjy jfr Bioinformatics - CRUK
	Capturing Heterogeneity in Gene Expression Studies by Surrogate Variable Analysis [My Copy] PLoS Genet, Vol. 3, No. 9. (28 September 2007), e161. by Jeffrey T. Leek, John D. Storey posted to microarray heterogeneity gene expression covariate by ptrobajo on 2009-09-17 21:39:15 as along with 5 people greg engelhardt jfr lp2 guhjy
	What is the best reference RNA? And other questions regarding the design and analysis of two-color microarray experiments. [My Copy] Omics : a journal of integrative biology, Vol. 11, No. 2. (2007), pp. 152-165. by Kathleen F. Kerr, Kyle A. Serikawa, Caimiao Wei, Mette A. Peters, Roger E. Bumgarner posted to reference microarray experimental design by ptrobajo on 2009-09-17 21:34:49 as along with 1 person guhjy
	CoXpress: differential co-expression in gene expression data. [My Copy] BMC bioinformatics, Vol. 7 (20 November 2006), 509. by Michael Watson posted to test microarray differential coexpression by ptrobajo on 2009-09-17 21:32:19 as along with 5 people jfr dquest shigepong waszak dps
	Constructing biological networks through combined literature mining and microarray analysis: a LMMA approach [My Copy] Bioinformatics, Vol. 22, No. 17. (1 September 2006), pp. 2143-2150. by Shao Li, Lijiang Wu, Zhongqi Zhang posted to network mining microarray literature disease-specific by ptrobajo on 2009-09-17 21:30:42 as along with 3 people mitko guhjy yas
	Hotelling's T2 multivariate profiling for detecting differential expression in microarrays [My Copy] Bioinformatics, Vol. 21, No. 14. (15 July 2005), pp. 3105-3113. by Yan Lu, Peng-Yuan Liu, Peng Xiao, Hong-Wen Deng posted to multivariate microarray hotelling expression differential by ptrobajo on 2009-09-17 15:36:58 as along with 3 people kemalpak tonamswish dquest
	Prediction of cancer outcome with microarrays: a multiple random validation strategy. [My Copy] Lancet, Vol. 365, No. 9458. (11 February 2005), pp. 488-492. by Stefan Michiels, Serge Koscielny, Catherine Hill posted to validation sampling random microarray cancer by ptrobajo on 2009-09-17 15:18:54 as along with 9 people and 1 group srp33 aviad_work frohike setar textoris jfr chad_davis giovanni winterschlaefer GeschwindLab
	Microarray based diagnosis profits from better documentation of gene expression signatures. [My Copy] PLoS computational biology, Vol. 4, No. 2. (1 February 2008), e22. by Dennis Kostka, Rainer Spang posted to signature microarray gene expression diagnosis annotation by ptrobajo on 2009-09-17 15:12:15 as along with 2 people jfr giovanni
	Finding disease specific alterations in the co-expression of genes. [My Copy] Bioinformatics (Oxford, England), Vol. 20 Suppl 1, No. suppl_1. (4 August 2004), pp. i194-199. by Dennis Kostka, Rainer Spang posted to microarray differential coexpression by ptrobajo on 2009-09-17 15:09:47 as along with 2 people and 1 group myzhang diging_data BTS-PT-AS-CS
	Patterns of gene expression in atrophying skeletal muscles: response to food deprivation. [My Copy] The FASEB journal : official publication of the Federation of American Societies for Experimental Biology, Vol. 16, No. 13. (November 2002), pp. 1697-1712. by R. Thomas Jagoe, Stewart H. Lecker, Marcelo Gomes, Alfred L. Goldberg posted to muscle milka microarray fasting by ptrobajo on 2009-09-17 15:00:10 as
	A global test for groups of genes: testing association with a clinical outcome. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 1. (1 January 2004), pp. 93-99. by Jelle J. Goeman, Sara A. van de Geer, Floor de Kort, Hans C. van Houwelingen posted to test microarray global geneset by ptrobajo on 2009-09-17 14:58:32 as along with 7 people and 1 group holecm frohike dragonrez ealloza ugengma saman_vp klo BioinfoCIPF
	Reannotation of array probes at NCBI's GEO database. [My Copy] Nature methods, Vol. 5, No. 2. (February 2008), pp. 117-117. by Tanya Barrett, Ron Edgar posted to rennotation microarray geo compendium by ptrobajo on 2009-09-17 14:55:06 as along with 1 person guhjy
	Adjusting batch effects in microarray expression data using empirical Bayes methods. [My Copy] Biostatistics (Oxford, England), Vol. 8, No. 1. (21 January 2007), pp. 118-127. by W. Evan Johnson, Cheng Li, Ariel Rabinovic posted to microarray empirical effect bayes batch by ptrobajo on 2009-09-17 10:39:54 as along with 3 people rschulz guhjy jfr
	Stage II colon cancer prognosis prediction by tumor gene expression profiling. [My Copy] Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 24, No. 29. (10 October 2006), pp. 4685-4691. by Alain Barrier, Pierre-Yves Y. Boelle, François Roser, et al.Jennifer Gregg, Chantal Tse, Didier Brault, François Lacaine, Sidney Houry, Michel Huguier, Brigitte Franc, Antoine Flahault, Antoinette Lemoine, Sandrine Dudoit posted to microarray interval confidence classification by ptrobajo on 2009-09-17 09:43:33 as along with 2 people jfr frohike
	Query-driven module discovery in microarray data [My Copy] Bioinformatics, Vol. 23, No. 19. (1 October 2007), pp. 2573-2580. by Thomas Dhollander, Qizheng Sheng, Karen Lemmens, Bart De Moor, Kathleen Marchal, Yves Moreau posted to query module microarray compendium by ptrobajo on 2009-09-17 09:38:32 as along with 4 people meanerelk guhjy tmmurali tvdbulck
	Celsius: a community resource for Affymetrix microarray data. [My Copy] Genome biology, Vol. 8, No. 6. (14 June 2007), R112. by Allen Day, Marc R. Carlson, Jun Dong, Brian D. O'Connor, Stanley F. Nelson posted to r-package microarray compendium affymetrix by ptrobajo on 2009-09-12 22:38:36 as along with 5 people jeremymiller jfr gpalidwor ghattem orzenil
	Pooling breast cancer datasets has a synergetic effect on classification performance and improves signature stability. [My Copy] BMC genomics, Vol. 9, No. 1. (06 August 2008), 375. by Martin H. van Vliet, Fabien Reyal, Hugo M. Horlings, Marc J. van de Vijver, Marcel J. Reinders, Lodewyk F. Wessels posted to signature pooling microarray integration herman cancer breast by ptrobajo on 2009-09-12 22:33:15 as along with 2 people jjrodriguez jfr
	A-MADMAN: annotation-based microarray data meta-analysis tool. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (29 June 2009), 201. by Andrea Bisognin, Alessandro Coppe, Francesco Ferrari, et al.Davide Risso, Chiara Romualdi, Silvio Bicciato, Stefania Bortoluzzi posted to microarray meta-analysis geo compendium by ptrobajo on 2009-09-06 21:36:54 as along with 6 people and 1 group daforerog dswan bertelsen guhjy shikin neils Bioinformatics
	Integrated analysis of DNA copy number and gene expression microarray data using gene sets [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (29 June 2009), 203. by Renee Menezes, Marten Boetzer, Melle Sieswerda, Gert J. van Ommen, Judith Boer posted to number microarray integration geneset data copy br45 by ptrobajo on 2009-09-06 21:35:34 as along with 8 people and 1 group daed zufar rdiaz dswan guhjy lwaldron shikin barriot Bioinformatics
	WebArrayDB: cross-platform microarray data analysis and public data repository [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2425-2429. by Xiao-Qin Xia, Michael McClelland, Steffen Porwollik, Wenzhi Song, Xianling Cong, Yipeng Wang posted to web r microarray cross-platform compendium by ptrobajo on 2009-09-06 20:51:47 as along with 8 people lwaldron daforerog dswan natstreet guhjy brianb neils rschulz
	Comparative analysis of gene regulation by the transcription factor PPARalpha between mouse and human. [My Copy] PloS one, Vol. 4, No. 8. (2009) by Maryam Rakhshandehroo, Guido Hooiveld, Michael Müller, Sander Kersten posted to transcription ppar mouse milka microarray human factor cross-species by ptrobajo on 2009-09-04 21:10:21 as
	Cross species analysis of microarray expression data [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. 1476-1483. by Yong Lu, Peter Huggins, Ziv Bar-Joseph posted to microarray cross-species by ptrobajo on 2009-08-28 16:04:50 as along with 12 people and 1 group jfr roys daveGerrard guhjy yaredo shikin dswan renatomilani rdiaz thomaskelder natstreet druvus Bioinformatics
	Expression differences for genes involved in lignin, glutathione and sulphate metabolism in response to cadmium in Arabidopsis thaliana and the related Zn/Cd-hyperaccumulator Thlaspi caerulescens. [My Copy] Plant, cell & environment, Vol. 31, No. 3. (March 2008), pp. 301-324. by Judith E. van de Mortel, Henk Schat, Perry D. Moerland, et al.Emiel Ver Loren van Themaat, Sjoerd van der Ent, Hetty Blankestijn, Artak Ghandilyan, Styliani Tsiatsiani, Mark G. Aarts posted to pathway microarray biorange-matching by ptrobajo on 2009-08-27 09:29:43 as
	A genetic programming-based approach to the classification of multiclass microarray datasets [My Copy] Bioinformatics, Vol. 25, No. 3. (1 February 2009), pp. 331-337. by Kun-Hong Liu, Chun-Gui Xu posted to classification genetic herman microarray programming by ptrobajo on 2009-08-03 08:21:17 as along with 4 people turnersd jfr rdiaz nuin
	Boosting and Microarray Data [My Copy] Mach. Learn., Vol. 52, No. 1-2. (2003), pp. 31-44. by Philip M. Long, Vinsensius B. Vega posted to boosting expression herman microarray by ptrobajo on 2009-08-01 10:32:35 as
	In silico microdissection of microarray data from heterogeneous cell populations [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005), 54. by Harri Lahdesmaki, Llya Shmulevich, Valerie Dunmire, Olli Y. Harja, Wei Zhang posted to deconvolution heterogeneous microarray by ptrobajo on 2009-07-28 21:33:22 as along with 1 person bertelsen
	Probabilistic retrieval and visualization of biologically relevant microarray experiments. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. i145-153. by José Caldas, Nils Gehlenborg, Ali Faisal, Alvis Brazma, Samuel Kaski posted to compendium learning machine microarray query retrieval by ptrobajo on 2009-07-08 22:02:54 as along with 6 people jfr ngehlenborg greg bertelsen guhjy shikin
	Cross-species comparison of human and mouse intestinal polyps reveals conserved mechanisms in adenomatous polyposis coli (APC)-driven tumorigenesis. [My Copy] The American journal of pathology, Vol. 172, No. 5. (May 2008), pp. 1363-1380. by C. Gaspar, J. Cardoso, P. Franken, et al.L. Molenaar, H. Morreau, G. Möslein, J. Sampson, J. M. Boer, R. X. de Menezes, R. Fodde posted to cross-species human microarray mouse tumor by ptrobajo on 2009-05-21 07:31:09 as
	Statistical methods of background correction for Illumina BeadArray data. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 6. (15 March 2009), pp. 751-757. by Yang Xie, Xinlei Wang, Michael Story posted to background correction illumina marcel microarray by ptrobajo on 2009-05-08 09:49:41 as along with 8 people and 1 group shikin jfr welliegirl rdiaz Stew heliopais dswan guhjy Bioinformatics - CRUK
	Enhanced identification and biological validation of differential gene expression via Illumina whole-genome expression arrays through the use of the model-based background correction methodology. [My Copy] Nucleic acids research, Vol. 36, No. 10. (1 June 2008), e58. by Liang-Hao H. Ding, Yang Xie, Seongmi Park, Guanghua Xiao, Michael D. Story posted to background correction illumina marcel microarray by ptrobajo on 2009-05-08 09:48:33 as along with 4 people shikin jfr inesdesantiago guhjy
	Three methods for optimization of cross-laboratory and cross-platform microarray expression data. [My Copy] Nucleic Acids Res, Vol. 35, No. 10. (2007) by P. Stafford, M. Brun posted to classification cross-validation expression herman microarray by ptrobajo on 2009-04-08 08:01:03 as along with 4 people heliopais guhjy jfr bertelsen
	Microarray-based classification and clinical predictors: on combined classifiers and additional predictive value [My Copy] Bioinformatics, Vol. 24, No. 15. (1 August 2008), pp. 1698-1706. by Anne-Laure Boulesteix, Christine Porzelius, Martin Daumer posted to classification clinical combination microarray by ptrobajo on 2009-03-31 20:43:04 as along with 4 people srp33 rdiaz giovanni aviad_work
	arrayQualityMetrics--a bioconductor package for quality assessment of microarray data [My Copy] Bioinformatics, Vol. 25, No. 3. (1 February 2009), pp. 415-416. by Audrey Kauffmann, Robert Gentleman, Wolfgang Huber posted to bioconductor control marcel microarray quality by ptrobajo on 2009-03-31 13:33:15 as along with 16 people and 1 group jperkins VGreiff Zephyrus daforerog shikin lwaldron jfr rdiaz siebert bertelsen pkonings dswan renatomilani rschulz nuin guhjy Bioinformatics
	A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database [My Copy] BMC Bioinformatics, Vol. 7 (23 October 2006), 464. by Simon Katz, Rafael A. Irizarry, Xue Lin, Mark Tripputi, Mark W. Porter posted to affymetrix compendium microarray normalization reference by ptrobajo on 2009-03-31 13:25:22 as along with 3 people bertelsen jfr ghattem
	Decoding randomly ordered DNA arrays. [My Copy] Genome research, Vol. 14, No. 5. (May 2004), pp. 870-877. by Kevin L. Gunderson, Semyon Kruglyak, Michael S. Graige, et al.Francisco Garcia, Bahram G. Kermani, Chanfeng Zhao, Diping Che, Todd Dickinson, Eliza Wickham, Jim Bierle, Dennis Doucet, Monika Milewski, Robert Yang, Chris Siegmund, Juergen Haas, Lixin Zhou, Arnold Oliphant, Jian-Bing B. Fan, Steven Barnard, Mark S. Chee posted to illumina marcel microarray by ptrobajo on 2009-03-31 13:12:57 as along with 5 people and 2 groups dswan daforerog rschulz xwbcn jeremymiller Bioinformatics GeschwindLab
	nuID: A universal naming schema of oligonucleotides for Illumina, Affymetrix, and other microarrays [My Copy] Biology Direct, Vol. 2 (31 May 2007), 16. by Pan Du, Warren A. Kibbe, Simon M. Lin posted to illumina marcel microarray oligo by ptrobajo on 2009-03-31 13:11:28 as along with 3 people heliopais jfr guhjy
	Consolidated strategy for the analysis of microarray spike-in data. [My Copy] Nucleic acids research (1 August 2008) by Matthew N N. McCall, Rafael A A. Irizarry posted to comparison microarray spike-in by ptrobajo on 2009-03-31 13:10:12 as along with 6 people lwaldron rdiaz jfr inesdesantiago barriot guhjy
	Model-based variance-stabilizing transformation for Illumina microarray data. [My Copy] Nucleic acids research, Vol. 36, No. 2. (4 February 2008), gkm1075. by Simon M. Lin, Pan Du, Wolfgang Huber, Warren A. Kibbe posted to illumina marcel microarray normalization by ptrobajo on 2009-03-31 13:00:20 as along with 5 people shikin heliopais jfr neveaire guhjy

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network	153
microarray	119
expression	90
cross-species	87
gene	80
pathway	73
miranda	60
geneset	58
nazanin	58
classification	52
mouse	50
protein	50
review	50
human	41
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peroxisome	35
cancer	34
integration	32
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cls-anton	30
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mass	30
spectrometry	30
module	29
herman	28
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proteomics	25
wouter	25
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education	24
regulatory	24
seldi	24
differential	22
dragan	21
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transcription	20
signature	19
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function	18
diabetes	15
drug	15
emiel	15
interaction	15
marcel	15
milka	15
signaling	15
biology	14
kegg	14
affymetrix	13
illumina	13
inference	13
knockout	13
sara	13
systems	13
analysis	12
bayesian	12
biorange-matching	12
breast	12
coexpression	12
microrna	12
association	11
graph	11
normalization	11
npc	11
snp	11
comparison	10
design	10
mining	10
missing	10
tissue	10
biorange	9
database	9
feature	9
metabolism	9
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br45	8
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bias	5
boosting	5
correlation	5
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noise	5
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binding	4
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genotype	4
hybridization	4
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least	4
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mrna	4
mutation	4
nfkb	4
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ppar	4
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set	4
size	4
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cyc	2
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metabolite	1

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