ptrobajo's miranda [60 articles] Export

Recent papers added to ptrobajo's library classified by the tag miranda. You can also see everyone's miranda.

	An Introduction to Metabolic Networks and Their Structural Analysis [My Copy] IEEE/ACM Transactions on Computational Biology and Bioinformatics In Computational Biology and Bioinformatics, IEEE/ACM Transactions on, Vol. 5, No. 4. (2008), pp. 594-617. by Vincent Lacroix, Ludovic Cottret, Patricia Thébault, Marie F. Sagot posted to review network miranda metabolic by ptrobajo on 2009-10-22 08:24:59 as along with 4 people cgaugain yujiangwang nsamways AbnerCYH
	The metabolic world of Escherichia coli is not small [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 6. (10 February 2004), pp. 1543-1547. by Masanori Arita posted to small-world network miranda metabolic ecoli by ptrobajo on 2009-10-21 21:02:48 as along with 11 people and 3 groups schwartzjmc camster PeterCollins riomenajang barry alexg tny azuma dylan77 Ema hryk dbk-lab structural_bioinformatics Bioinformatics
	HPD: an online integrated human pathway database enabling systems biology studies. [My Copy] BMC bioinformatics, Vol. 10 Suppl 11, No. Suppl 11. (2009), S5. by Sudhir R. Chowbina, Xiaogang Wu, Fan Zhang, et al.Peter M. Li, Ragini Pandey, Harini N. Kasamsetty, Jake Y. Chen posted to reactome pathway miranda kegg integration database by ptrobajo on 2009-10-16 13:43:26 as along with 1 person daforerog
	How to identify essential genes from molecular networks? [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 102. by Gabriel D. Rio, Dirk Koschutzki, Gerardo Coello posted to yeast network miranda metabolic kegg by ptrobajo on 2009-10-14 20:35:26 as along with 7 people operon tmmurali kshameer phoenixzxl renatomilani druvus daforerog
	KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (08 October 2009), 324. by Konstantinos Moutselos, Ioannis Kanaris, Aristotelis Chatziioannou, Ilias Maglogiannis, Fragiskos Kolisis posted to network modeling miranda metabolic kegg by ptrobajo on 2009-10-12 14:54:10 as along with 8 people and 1 group tonamswish Thaverkamp sillitoe trogdor druvus dullhunk reyez renatomilani Orengo Group Journal Picks
	Identification of genes involved in the same pathways using a Hidden Markov Model-based approach [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2945-2954. by Alexander Senf, Xue-wen Chen posted to pathway missing miranda microarray hmm gene by ptrobajo on 2009-10-12 13:24:11 as along with 2 people and 1 group poirel TRHvidsten Orengo Group Journal Picks
	Reactome Array: Forging a Link Between Metabolome and Genome [My Copy] Science, Vol. 326, No. 5950. (9 October 2009), pp. 252-257. by A. Beloqui, M. E. Guazzaroni, F. Pazos, et al.J. M. Vieites, M. Godoy, O. V. Golyshina, T. N. Chernikova, A. Waliczek, R. Silva-Rocha, Y. Al-ramahi, V. La Cono, C. Mendez, J. A. Salas, R. Solano, M. M. Yakimov, K. N. Timmis, P. N. Golyshin, M. Ferrer posted to reaction miranda metabolome genome array by ptrobajo on 2009-10-09 10:03:46 as along with 9 people and 1 group ajsferreira kinestetika renatomilani leliavski michaelbarton brianb abhishek_tiwari TRHvidsten gbloeb Shared Literature Resource of the Microbial Fitness Group - MPI Bremen
	A dictionary to identify small molecules and drugs in free text [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2983-2991. by Kristina M. Hettne, Rob H. Stierum, Martijn J. Schuemie, et al.Peter J. M. Hendriksen, Bob J. A. Schijvenaars, Erik M. Mulligen, Jos Kleinjans, Jan A. Kors posted to text molecule miranda mining metabolite dictionary by ptrobajo on 2009-09-18 21:10:48 as along with 3 people and 1 group reyez anthropomorphism dullhunk Journal picks
	Computational prediction of cancer-gene function. [My Copy] Nature reviews. Cancer, Vol. 7, No. 1. (14 January 2007), pp. 23-34. by Pingzhao Hu, Gary Bader, Dennis A. Wigle, Andrew Emili posted to protein network miranda function education cancer by ptrobajo on 2009-09-17 09:51:05 as along with 7 people and 1 group guhjy jfr ealloza emb51 Garamonfok cerami srp33 BioinfoCIPF
	ConsensusPathDB--a database for integrating human functional interaction networks. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (21 January 2009), gkn698. by Atanas Kamburov, Christoph Wierling, Hans Lehrach, Ralf Herwig posted to network miranda interaction integration database consensus by ptrobajo on 2009-09-17 09:35:48 as along with 7 people irenas mdstobbe lptolik guhjy barriot thomaskelder renatomilani
	Probabilistic Protein Function Prediction from Heterogeneous Genome-Wide Data [My Copy] PLoS ONE, Vol. 2, No. 3. (2007), e337. by Naoki Nariai, Eric D. Kolaczyk, Simon Kasif posted to protein network miranda integration function by ptrobajo on 2009-09-12 22:42:55 as along with 4 people cerca sgoetz wilbur tmmurali
	SAGA: a subgraph matching tool for biological graphs. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 2. (15 January 2007), pp. 232-239. by Yuanyuan Tian, Richard C. McEachin, Carlos Santos, David J. States, Jignesh M. Patel posted to subgraph network miranda matching graph by ptrobajo on 2009-09-12 22:09:35 as along with 4 people nedwards kenji MarcoAlvarez blackbart
	Supervised reconstruction of biological networks with local models [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i57-65. by Kevin Bleakley, Gerard Biau, Jean-Philippe Vert posted to network model missing miranda local inference gene by ptrobajo on 2009-09-12 22:07:57 as along with 3 people seb1 anf shigepong
	Protein network inference from multiple genomic data: a supervised approach. [My Copy] Bioinformatics (Oxford, England), Vol. 20 Suppl 1 (4 August 2004) by Y. Yamanishi, J-P P. Vert, M. Kanehisa posted to supervised network missing miranda kernel integration inference gene data by ptrobajo on 2009-09-12 22:01:34 as along with 3 people jfr bioinfo iris_2001
	A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (14 August 2009), e1000465. by Yuzhen Ye, Thomas G. Doak posted to reconstruction pathway miranda kegg genomic by ptrobajo on 2009-09-06 20:27:46 as along with 6 people and 1 group mstumpf barriot rdiaz michaelbarton kshameer djkt iSEEM
	Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production. [My Copy] PLoS computational biology, Vol. 5, No. 8. (28 August 2009), e1000489. by Caroline Colijn, Aaron Brandes, Jeremy Zucker, et al.Desmond S. Lun, Brian Weiner, Maha R. Farhat, Tan-Yun Y. Cheng, D. Branch Moody, Megan Murray, James E. Galagan posted to network miranda metabolic gene flux expression by ptrobajo on 2009-09-04 21:24:51 as along with 1 person JeremyZucker
	Pathway databases and tools for their exploitation: benefits, current limitations and challenges [My Copy] Molecular Systems Biology, Vol. 5 (28 July 2009) by Anna Bauer-Mehren, Laura I. Furlong, Ferran Sanz posted to pathway miranda metabolic database by ptrobajo on 2009-09-03 14:33:59 as along with 8 people saman_vp dullhunk thomaskelder ngehlenborg allysonlister daforerog mingzhi renatomilani
	MouseCyc: a curated biochemical pathways database for the laboratory mouse [My Copy] Genome Biology, Vol. 10, No. 8. (14 August 2009), R84. by Alexei Evsikov, Mary Dolan, Michael Genrich, Emily Patek, Carol Bult posted to mouse miranda metabolic database cyc by ptrobajo on 2009-08-31 12:37:37 as along with 2 people megraw druvus
	How Large Is the Metabolome? A Critical Analysis of Data Exchange Practices in Chemistry [My Copy] PLoS ONE, Vol. 4, No. 5. (5 May 2009), e5440. by Tobias Kind, Martin Scholz, Oliver Fiehn posted to standards miranda metabolism identifier data by ptrobajo on 2009-08-28 16:06:50 as along with 2 people eehsanipour dullhunk
	Metabolic pathfinding using RPAIR annotation. [My Copy] Journal of molecular biology, Vol. 388, No. 2. (1 May 2009), pp. 390-414. by Karoline Faust, Didier Croes, Jacques van Helden posted to pathway miranda metabolic kegg by ptrobajo on 2009-08-28 16:05:53 as along with 2 people Thaverkamp druvus
	Training set expansion: an approach to improving the reconstruction of biological networks from limited and uneven reliable interactions [My Copy] Bioinformatics, Vol. 25, No. 2. (15 January 2009), pp. 243-250. by Kevin Y. Yip, Mark Gerstein posted to miranda network reconstruction semi-supervised by ptrobajo on 2009-08-03 08:41:25 as along with 6 people anf guhjy mstumpf imina grahamc kgutwin
	3D-Fun: predicting enzyme function from structure. [My Copy] Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008) by M. von Grotthuss, D. Plewczynski, G. Vriend, L. Rychlewski posted to enzyme function miranda nazanin prediction structure by ptrobajo on 2009-07-15 21:47:49 as
	Current progress in network research: toward reference networks for key model organisms [My Copy] Brief Bioinform, Vol. 8, No. 5. (1 September 2007), pp. 318-332. by Balaji S. Srinivasan, Nigam H. Shah, Jason A. Flannick, Eduardo Abeliuk, Antal F. Novak, Serafim Batzoglou posted to review organism network model miranda by ptrobajo on 2009-07-02 21:58:14 as along with 10 people and 1 group carlk abhishek_tiwari akshayk pengchy guhjy grahamc nedwards roys daed marck Bioinformatics
	KiPar, a tool for systematic information retrieval regarding parameters for kinetic modelling of yeast metabolic pathways. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 11. (1 June 2009), pp. 1404-1411. by Irena Spasic, Evangelos Simeonidis, Hanan L. Messiha, Norman W. Paton, Douglas B. Kell posted to kinetic metabolic mining miranda network text yeast by ptrobajo on 2009-07-02 15:30:58 as along with 3 people irenas mitko dullhunk
	Max-margin Classification of Data with Absent Features [My Copy] Journal of Machine Learning Research, Vol. 9 (January 2008), pp. 1-21. by Gal Chechik, Geremy Heitz, Gal Elidan, Pieter Abbeel, Daphne Koller posted to gene metabolic miranda missing network svm by ptrobajo on 2009-06-22 22:15:07 as along with 3 people shpigi luispedro sdvillal
	Optimization based automated curation of metabolic reconstructions [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (20 June 2007), 212. by Vinay S. Kumar, Madhukar Dasika, Costas Maranas posted to gene metabolic miranda missing network optimization by ptrobajo on 2009-06-22 21:59:43 as along with 2 people vpenelle JeremyZucker
	INTEGRATING BIOLOGICAL DATABASES [My Copy] Nat Rev Genet, Vol. 4, No. 5. (May 2003), pp. 337-345. by Lincoln D. Stein posted to database integration miranda review by ptrobajo on 2009-05-05 10:13:01 as along with 10 people neils neilernst eweaver vaija laszlo8 hpiwowar fisherp lei cjeans rvosa
	Standards for systems biology [My Copy] Nature Reviews Genetics, Vol. 7, No. 8. (01 August 2006), pp. 593-605. by Alvis Brazma, Maria Krestyaninova, Ugis Sarkans posted to biopax miranda review standards by ptrobajo on 2009-04-09 13:32:42 as along with 17 people and 3 groups mtaschuk irenas abhishek_tiwari allysonlister hbricknell daforerog natstreet aalibes jfr rdiaz ronaldozhou mhucka dagmar peterli sgoetz giovenko fgibson dIEMoSIRIS compneur GelML
	Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists [My Copy] Nucl. Acids Res., Vol. 37, No. 1. (1 January 2009), pp. 1-13. by Da W. Huang, Brad T. Sherman, Richard A. Lempicki posted to enrichment functional miranda review by ptrobajo on 2009-03-24 20:50:01 as along with 44 people and 2 groups darian chasmand hzoltan ipark-kaist giovenko lwaldron jcaddy antonkratz Zephyrus shikin yaredo tonamswish ddunbar robfsouza Keywan daforerog rdiaz bertelsen Stew inesdesantiago heliopais AlexanderPico aviad_work ekotelnikova frohike aramesh2 jfr zufar ilyashl dolchan paszkows lptolik thomaskelder AbnerCYH neils tmmurali ealloza barriot druvus renatomilani pengchy phoenixzxl guhjy sjcockell Bioinformatics - CRUK ConklinLab
	KEGG spider: interpretation of genomics data in the context of the global gene metabolic network [My Copy] Genome Biology, Vol. 9, No. 12. (2008), R179. by Alexey Antonov, Sabine Dietmann, Hans Mewes posted to kegg metabolic microarray miranda network by ptrobajo on 2009-03-24 20:45:06 as along with 14 people and 2 groups Thaverkamp cgaugain jfr bluto sylvainforet Stew Cortel Zephyrus guhjy neils cmzmasek fgibson dullhunk druvus Bioinformatics - CRUK Roswell Cancer Crosstalk
	Understanding human metabolic physiology: a genome-to-systems approach [My Copy] Trends in Biotechnology, Vol. 27, No. 1. (14 January 2009), pp. 37-44. by M. Mo, B. Palsson posted to human jamboree metabolic miranda network review by ptrobajo on 2009-03-19 15:56:53 as along with 5 people mingzhi schwartzjmc agonzale guhjy dullhunk
	Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network [My Copy] Nature Biotechnology, Vol. 26, No. 11. (26 October 2008), pp. 1251-1259. by Gal Chechik, Eugene Oh, Oliver Rando, Jonathan Weissman, Aviv Regev, Daphne Koller posted to metabolic miranda motifs network transcription yeast by ptrobajo on 2009-01-22 21:26:45 as along with 8 people jbhiatt balabu behindtherabbit ojabado jjray renatomilani megraw neils
	Getting connected: analysis and principles of biological networks [My Copy] Genes & Development, Vol. 21, No. 9. (1 May 2007), pp. 1010-1024. by Xiaowei Zhu, Mark Gerstein, Michael Snyder posted to education miranda module network review by ptrobajo on 2008-12-15 21:10:07 as along with 16 people abhishek_tiwari arsyed nzm jaimie davidecellai pengchy jfr balajis grahamc fishtank nedwards naegele Evangelia kristen carlk renatomilani
	PathCase: Pathways Database System [My Copy] Bioinformatics (26 August 2008), btn459. by B. Elliott, M. Kirac, A. Cakmak, et al.G. Yavas, S. Mayes, E. Cheng, Y. Wang, C. Gupta, G. Ozsoyoglu, Z. M. Ozsoyoglu posted to cyc database kegg miranda pathway by ptrobajo on 2008-10-26 21:02:35 as along with 10 people and 2 groups AlexanderPico jfr Zephyrus druvus mdstobbe dullhunk guhjy aconesa renatomilani thomaskelder ConklinLab Roswell Cancer Crosstalk
	Metabolic network visualization eliminating node redundance and preserving metabolic pathways. [My Copy] BMC systems biology, Vol. 1 (2007) by R. Bourqui, L. Cottret, V. Lacroix, et al.D. Auber, P. Mary, M. F. Sagot, F. Jourdan posted to metabolic miranda network visualization pathway by ptrobajo on 2008-10-24 09:50:39 as along with 2 people ywondimu hryk
	Constraint-based functional similarity of metabolic genes: going beyond network topology [My Copy] Bioinformatics, Vol. 23, No. 16. (15 August 2007), pp. 2139-2146. by Oleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, Ron Y. Pinter posted to metabolic miranda network similarity topology by ptrobajo on 2008-10-22 21:25:20 as along with 1 person zwang
	Systematic condition-dependent annotation of metabolic genes. [My Copy] Genome research, Vol. 17, No. 11. (November 2007), pp. 1626-1633. by T. Shlomi, M. Herrgard, V. Portnoy, et al.E. Naim, B. Ø. Palsson, R. Sharan, E. Ruppin posted to annotation condition metabolic miranda by ptrobajo on 2008-10-22 21:24:42 as
	BioWarehouse: a bioinformatics database warehouse toolkit [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006), 170. by Thomas Lee, Yannick Pouliot, Valerie Wagner, et al.Priyanka Gupta, David S. Calvert, Jessica Tenenbaum, Peter Karp posted to database miranda warehouse pathway by ptrobajo on 2008-10-16 09:50:31 as along with 5 people operon druvus eweaver mircea Simplicity
	A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology [My Copy] Nat Biotech, Vol. 26, No. 10. (09 October 2008), pp. 1155-1160. by Markus J. Herrgard, Neil Swainston, Paul Dobson, et al.Warwick B. Dunn, K. Yalcin Arga, Mikko Arvas, Nils Buthgen, Simon Borger, Roeland Costenoble, Matthias Heinemann, Michael Hucka, Nicolas Le Novere, Peter Li, Wolfram Liebermeister, Monica L. Mo, Ana P. Oliveira, Dina Petranovic, Stephen Pettifer, Evangelos Simeonidis, Kieran Smallbone, Irena Spasie, Dieter Weichart, Roger Brent, David S. Broomhead, Hans V. Westerhoff, Betul Kurdar, Merja Penttila, Edda Klipp, Bernhard O. Palsson, Uwe Sauer, Stephen G. Oliver, Pedro Mendes, Jens Nielsen, Douglas B. Kell posted to biology consensus metabolic miranda network systems yeast by ptrobajo on 2008-10-10 09:48:42 as along with 22 people and 2 groups m_j pmendes windman83 jfr raiyar neilswainston irenas JeremyZucker chasmand schwartzjmc pinney pauldobson alaninmcr allysonlister zwang guhjy dbk michaelbarton neils dullhunk pengchy tmmurali MetabolicModeling BergmanLab
	A critical examination of stoichiometric and path-finding approaches to metabolic pathways [My Copy] Brief Bioinform (24 April 2008), bbn018. by Francisco J. Planes, John E. Beasley posted to graph metabolic miranda stoichiometry pathway by ptrobajo on 2008-10-08 23:25:50 as along with 5 people pablocarb lflorez guhjy renatomilani shung
	Predicting Pathway Membership via Domain Signatures [My Copy] Bioinformatics (1 August 2008), btn403. by Holger Frohlich, Mark Fellmann, Holger Sultmann, Annemarie Poustka, Tim Beissbarth posted to domain miranda protein pathway by ptrobajo on 2008-09-27 20:56:26 as along with 9 people le-gal druvus jameswasmuth kshameer jfr barriot mdstobbe phoenixzxl guhjy
	Network-based prediction of human tissue-specific metabolism. [My Copy] Nature biotechnology, Vol. 26, No. 9. (17 September 2008), pp. 1003-1010. by Tomer Shlomi, Moran N. Cabili, Markus J. Herrgård, Bernhard Ø. Palsson, Eytan Ruppin posted to metabolism miranda network tissue-specific by ptrobajo on 2008-09-14 20:21:53 as along with 12 people phoenixzxl grahamc yaredo Sonix jfr roys mdstobbe klo peterli renatomilani zwang guhjy
	Networking metabolites and diseases [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 29. (22 July 2008), pp. 9849-9850. by Pascal Braun, Edward Rietman, Marc Vidal posted to disease metabolism miranda network by ptrobajo on 2008-08-08 10:24:24 as along with 5 people mingzhi roys guhjy Borelli AbnerCYH
	The implications of human metabolic network topology for disease comorbidity [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 29. (22 July 2008), pp. 9880-9885. by D. S. Lee, J. Park, K. A. Kay, N. A. Christakis, Z. N. Oltvai, A. L. BarabÃ¡si posted to bigg disease kegg metabolic miranda network by ptrobajo on 2008-07-30 10:55:24 as along with 6 people tomhebbron mingzhi sergiun klaatujohn guhjy Borelli
	Using the topology of metabolic networks to predict viability of mutant strains. [My Copy] Biophys J, Vol. 91, No. 6. (September 2006), pp. 2304-2311. by Z. Wunderlich, L. A. Mirny posted to dragan knockout metabolic miranda mutant network topology by ptrobajo on 2008-07-30 10:54:50 as along with 2 people kentsis cckan
	Prediction of nitrogen metabolism-related genes in Anabaena by kernel-based network analysis. [My Copy] Proteomics, Vol. 7, No. 6. (March 2007), pp. 900-909. by S. Okamoto, Y. Yamanishi, S. Ehira, S. Kawashima, K. Tonomura, M. Kanehisa posted to kernel miranda missing proteomics gene by ptrobajo on 2008-07-03 14:49:04 as
	Context-Specific Metabolic Networks Are Consistent with Experiments [My Copy] PLoS Comput Biol, Vol. 4, No. 5. (16 May 2008), e1000082. by Scott A. Becker, Bernhard O. Palsson posted to context-specific metabolism miranda network by ptrobajo on 2008-06-18 13:29:15 as along with 4 people JeremyZucker guhjy aramesh2 roys
	GraphWeb: mining heterogeneous biological networks for gene modules with functional significance. [My Copy] Nucleic acids research (6 May 2008) by Jüri Reimand, Laur Tooming, Hedi Peterson, Priit Adler, Jaak Vilo posted to module graph miranda network by ptrobajo on 2008-06-18 12:44:34 as along with 7 people gotgenes GustavoLacerda jfr guhjy pinney maralena shigepong
	Hierarchical structure and the prediction of missing links in networks [My Copy] Nature, Vol. 453, No. 7191. (01 May 2008), pp. 98-101. by Aaron Clauset, Cristopher Moore, M. E. J. Newman posted to graph hierarchical miranda missing network random by ptrobajo on 2008-06-18 12:30:34 as along with 46 people ipark-kaist carlk gtgt15 saket wei_tang Kovanen diamantis cfelipesp orahcio rcrane kubyaddi pbull Ema jago cmor balicea kengg jjray soramame_0518 deanmalmgren briordan hryk tny AbnerCYH cactus tmmurali akshat bryanhughes gagliol margaritis guhjy craigwilson06 cmmorel eyliu markusd elsantosneto pinney i-stevenson fbaroni nedwards apwesolowski Borelli dpf rds lfriedl sen_cheng
	A new pairwise kernel for biological network inference with support vector machines. [My Copy] BMC bioinformatics, Vol. 8 Suppl 10 (2007) by J. P. Vert, J. Qiu, W. S. Noble posted to kernel miranda network supervised svm by ptrobajo on 2008-06-18 11:07:56 as

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network	153
microarray	119
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nazanin	58
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mouse	50
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reaction	2
reannotation	2
reduction	2
resistance	2
ribosomal	2
rnai	2
rodent	2
rosetta	2
r-package	2
service	2
similarity	2
small	2
spike-in	2
standards	2
statistical	2
subcellular	2
synthetic	2
syntren	2
system	2
testing	2
tiling	2
transitive	2
unlabeled	2
variation	2
wikipathways	2
zebrafish	2
70-gene	1
abundance	1
acgh	1
acid	1
adaptive	1
adipocyte	1
adult	1
aging	1
algorithm	1
alternating	1
amplification	1
angiogenic	1
animal	1
anova	1
anti-correlation	1
anton-cls	1
application	1
approximation	1
arrayexpress	1
atlas	1
attribute	1
backpropagation	1
bayes	1
bicluster	1
biclustering	1
bigg	1
bimodality	1
biomart	1
biopax	1
blast	1
blosum62	1
cadmium	1
cage	1
candidate	1
capture	1
cardiac	1
case-control	1
causal	1
cervical	1
chemogenomics	1
chemosensitivity	1
chimera	1
chimpanzee	1
chip-chip	1
chip-seq	1
chromosome	1
classificatiion	1
cluster	1
cnv	1
code	1
coding	1
coevolution	1
co-expression	1
collateral	1
combinatorics	1
community	1
completeness	1
complex	1
compound	1
connection	1
conservation	1
conserved	1
constraint	1
context	1
context-specific	1
covariate	1
crm	1
crohn	1
curation	1
cytokine	1
cytoscape	1
dave	1
decision	1
deletions	1
detection	1
dictionary	1
diet	1
dietary	1
dimension	1
direct	1
dirichlet	1
discriminant	1
discriminatory	1
disorder	1
efficient	1
egfr	1
eigengene	1
element	1
elementary	1
em	1
e-map	1
empirical	1
endocytosis	1
ensemble	1
er	1
error	1
ethics	1
eukaryote	1
exon	1
expectation	1
experiment	1
fatty	1
feedback	1
flux	1
fly	1
focusing	1
fto	1
fuzzy	1
gametogenesis	1
gapdh	1
gastric	1
gaussian	1
gel	1
genomic	1
genomics	1
geometric	1
gerben	1
glioma	1
global	1
glucose	1
glucosykceramide	1
grammer	1
grid	1
groningen	1
group	1
gui	1
hapmap	1
heterogeneity	1
hexamer	1
hidden	1
hierarchy	1
histone	1
hmm	1
hnf	1
hub	1
humna	1
hypergraph	1
identifier	1
imaging	1
inbred_strains	1
individual	1
ineractome	1
insulin_resistance	1
interferon	1
intrinsic	1
islet	1
isoelectric	1
item	1
jamboree	1
joint	1
juvenile	1
kholodenko	1
kidney	1
laplacian	1
laser	1
learning	1
level	1
ligand	1
line	1
linear	1
literature	1
local	1
logic	1
lps	1
lung	1
lupus	1
macaques	1
machine	1
mammalian	1
maqc	1
markov	1
matching	1
maximization	1
measure	1
mechanistic	1
metabolite	1

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