ptrobajo's nazanin [58 articles] Export

Recent papers added to ptrobajo's library classified by the tag nazanin. You can also see everyone's nazanin.

	Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics [My Copy] PLoS Biol, Vol. 7, No. 10. (6 October 2009), e1000213. by Zhihua Li, Insuk Lee, Emily Moradi, Nai-Jung Hung, Arlen W. Johnson, Edward M. Marcotte posted to ribosomal protein network nazanin localization function by ptrobajo on 2009-10-06 21:23:58 as along with 4 people carlk tmmurali djkt lp2
	A novel stepwise analysis procedure of genome-wide expression profiles identifies transcript signatures of thiamine genes as classifiers of mitochondrial mutants. [My Copy] Yeast (Chichester, England), Vol. 25, No. 2. (February 2008), pp. 129-140. by L. M. Eijssen, P. J. Lindsey, R. Peeters, et al.R. L. Westra, R. G. van Eijsden, M. Bolotin-Fukuhara, H. J. Smeets, R. F. Vlietinck posted to protein nazanin mutant mitochondrial knockout gene function expression by ptrobajo on 2009-09-17 09:46:03 as
	Importing mitochondrial proteins: machineries and mechanisms. [My Copy] Cell, Vol. 138, No. 4. (21 August 2009), pp. 628-644. by Agnieszka Chacinska, Carla M. Koehler, Dusanka Milenkovic, Trevor Lithgow, Nikolaus Pfanner posted to review protein nazanin mitochondrial localization by ptrobajo on 2009-09-11 20:48:21 as
	MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (1 September 2009), 274. by Torsten Blum, Sebastian Briesemeister, Oliver Kohlbacher posted to svm protein phylogeny ontology nazanin localization gene by ptrobajo on 2009-09-04 21:00:10 as along with 1 person operon
	3D-Fun: predicting enzyme function from structure. [My Copy] Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008) by M. von Grotthuss, D. Plewczynski, G. Vriend, L. Rychlewski posted to enzyme function miranda nazanin prediction structure by ptrobajo on 2009-07-15 21:47:49 as
	Predicted mouse peroxisome-targeted proteins and their actual subcellular locations [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 12. (2008), S16. by Yumi Mizuno, Igor Kurochkin, Marlis Herberth, Yasushi Okazaki, Christian Schonbach posted to mouse nazanin peroxisome subcellular by ptrobajo on 2009-07-03 20:59:58 as along with 1 person grahamc
	Directing experimental biology: a case study in mitochondrial biogenesis. [My Copy] PLoS computational biology, Vol. 5, No. 3. (20 March 2009), e1000322. by Matthew A. Hibbs, Chad L. Myers, Curtis Huttenhower, et al.David C. Hess, Kai Li, Amy A. Caudy, Olga G. Troyanskaya posted to biogenesis function mitochondrial nazanin prediction by ptrobajo on 2009-03-20 23:04:46 as along with 3 people and 1 group tmmurali bertelsen biomcgary Marcotte_Lab
	Approaching complete peroxisome characterization by gas-phase fractionation. [My Copy] Electrophoresis, Vol. 23, No. 18. (September 2002), pp. 3205-3216. by E. C. Yi, M. Marelli, H. Lee, et al.S. O. Purvine, R. Aebersold, J. D. Aitchison, D. R. Goodlett posted to localization mass nazanin peroxisome protein spectrometry yeast by ptrobajo on 2008-11-11 08:39:58 as
	Predicting subcellular localization via protein motif co-occurrence. [My Copy] Genome research, Vol. 14, No. 10A. (October 2004), pp. 1957-1966. by M. S. Scott, D. Y. Thomas, M. T. Hallett posted to localization nazanin peroxisome protein by ptrobajo on 2008-11-09 20:24:21 as along with 1 person tienholin
	Proteomics of the peroxisome. [My Copy] Biochimica et biophysica acta, Vol. 1763, No. 12. (December 2006), pp. 1541-1551. by R. A. Saleem, J. J. Smith, J. D. Aitchison posted to nazanin peroxisome proteomics by ptrobajo on 2008-11-09 20:20:45 as
	'Unite and conquer': enhanced prediction of protein subcellular localization by integrating multiple specialized tools [My Copy] BMC Bioinformatics, Vol. 8 (29 October 2007), 420. by Yao-Qing Shen, Gertraud Burger posted to integration localization nazanin protein by ptrobajo on 2008-11-08 21:40:31 as along with 3 people tienholin iris_2001 mdstobbe
	Approaching complete peroxisome characterization by gas-phase fractionation [My Copy] ELECTROPHORESIS, Vol. 23, No. 18. (2002), pp. 3205-3216. by Eugene C. Yi, Marcello Marelli, Hookeun Lee, et al.Samuel O. Purvine, Ruedi Aebersold, John D. Aitchison, David R. Goodlett posted to localization mass nazanin peroxisome protein spectrometry yeast by ptrobajo on 2008-11-06 08:37:59 as
	Origin and evolution of the peroxisomal proteome [My Copy] Biology Direct, Vol. 1 (23 March 2006), 8. by Toni Gabaldón, Berend Snel, Frank van Zimmeren, Wieger Hemrika, Henk Tabak, Martijn A. Huynen posted to evolution localization nazanin peroxisome protein by ptrobajo on 2008-11-06 08:31:27 as along with 2 people tny dquest
	Quantitative proteomic comparison of mouse peroxisomes from liver and kidney [My Copy] PROTEOMICS, Vol. 7, No. 11. (2007), pp. 1916-1928. by Jia Mi, Eva Kirchner, Susana Cristobal posted to gel kidney liver mouse nazanin peroxisome by ptrobajo on 2008-11-04 15:54:28 as
	In-depth Analysis of the Adipocyte Proteome by Mass Spectrometry and Bioinformatics [My Copy] Mol Cell Proteomics, Vol. 6, No. 7. (1 July 2007), pp. 1257-1273. by Jun Adachi, Chanchal Kumar, Yanling Zhang, Matthias Mann posted to adipocyte localization mass nazanin prioritization protein spectrometry by ptrobajo on 2008-11-04 14:49:36 as along with 1 person barriot
	Rat liver peroxisomes after fibrate treatment. A survey using quantitative mass spectrometry. [My Copy] The Journal of biological chemistry, Vol. 282, No. 32. (10 August 2007), pp. 23055-23069. by M. Islinger, G. H. Lüers, K. W. Li, M. Loos, A. Völkl posted to localization mass nazanin peroxisome protein rat spectrometry by ptrobajo on 2008-11-04 14:39:24 as
	Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling. [My Copy] Cell, Vol. 125, No. 1. (7 April 2006), pp. 173-186. by T. Kislinger, B. Cox, A. Kannan, et al.C. Chung, P. Hu, A. Ignatchenko, M. S. Scott, A. O. Gramolini, Q. Morris, M. T. Hallett, J. Rossant, T. R. Hughes, B. Frey, A. Emili posted to localization mass mouse nazanin protein spectrometry by ptrobajo on 2008-11-04 14:28:53 as along with 3 people tienholin balicea kristen
	Assessing Systems Properties of Yeast Mitochondria through an Interaction Map of the Organelle [My Copy] PLoS Genetics, Vol. 2, No. 10. (1 October 2006), e170. by Fabiana Perocchi, Lars J. Jensen, Julien Gagneur, et al.Uwe Ahting, Christian von Mering, Peer Bork, Holger Prokisch, Lars M. Steinmetz posted to localization mitochondrial nazanin protein yeast by ptrobajo on 2008-11-04 10:00:38 as along with 3 people mdstobbe kristen larsjuhljensen
	Mimicking cellular sorting improves prediction of subcellular localization. [My Copy] J Mol Biol, Vol. 348, No. 1. (22 April 2005), pp. 85-100. by R. Nair, B. Rost posted to hierarchy localization nazanin protein svm by ptrobajo on 2008-11-04 09:35:41 as along with 1 person Cortel
	The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000160. by Marco Punta, Yanay Ofran posted to function localization nazanin protein by ptrobajo on 2008-11-03 16:04:16 as along with 20 people and 1 group ucbcjbm pansapiens kiekyon Thaverkamp niallhaslam daforerog Zalanszabo bpcusack Katje joseph_x_zhou taguchi sjcockell markchen chad_davis druvus mdstobbe giovenko nilanjanroy reyez GeeSharpMinor microbiology_nijmegen
	Gene function prediction using labeled and unlabeled data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 57. by Xing M. Zhao, Yong Wang, Luonan Chen, Kazuyuki Aihara posted to function nazanin semi-supervised unlabeled by ptrobajo on 2008-10-28 12:25:26 as along with 4 people sdvillal tmmurali ironcamel mdstobbe
	Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species [My Copy] Nucl. Acids Res. (4 October 2008), gkn619. by Kiyoung Lee, Han-Yu Chuang, Andreas Beyer, et al.Min-Kyung Sung, Won-Ki Huh, Bonghee Lee, Trey Ideker posted to fly human localization nazanin network protein yeast by ptrobajo on 2008-10-27 14:34:31 as along with 6 people tienholin carlk brianb neils grahamc giovenko
	Improving Subcellular Localization Prediction using Text Classification and the Gene Ontology [My Copy] Bioinformatics (26 August 2008), btn463. by Alona Fyshe, Yifeng Liu, Duane Szafron, Russ Greiner, Paul Lu posted to gene localization mining nazanin ontology protein text by ptrobajo on 2008-10-26 20:53:36 as along with 3 people guhjy grahamc phoenixzxl
	The peroxisome: still a mysterious organelle [My Copy] Histochemistry and Cell Biology, Vol. 129, No. 4. (April 2008), pp. 421-440. by Schrader, Michael, Fahimi, H. posted to nazanin peroxisome review by ptrobajo on 2008-10-17 21:49:45 as along with 1 person viktor21614
	Sequence-based discovery of the human and rodent peroxisomal proteome. [My Copy] Applied bioinformatics, Vol. 4, No. 2. (2005), pp. 93-104. by I. V. Kurochkin, T. Nagashima, A. Konagaya, C. Schönbach posted to human localization nazanin peroxisome rodent by ptrobajo on 2008-10-17 21:45:20 as
	Hidden localization motifs: naturally occurring peroxisomal targeting signals in non-peroxisomal proteins. [My Copy] Genome biology, Vol. 5, No. 12. (2004) by G. Neuberger, M. Kunze, F. Eisenhaber, J. Berger, A. Hartig, C. Brocard posted to localization motifs nazanin peroxisome by ptrobajo on 2008-10-17 21:43:13 as
	Coordination of Growth Rate, Cell Cycle, Stress Response, and Metabolic Activity in Yeast. [My Copy] Mol Biol Cell (24 October 2007) by Matthew J J. Brauer, Curtis Huttenhower, Edoardo M M. Airoldi, et al.Rachel Rosenstein, John C C. Matese, David Gresham, Viktor M M. Boer, Olga G G. Troyanskaya, David Botstein posted to expression gene nazanin peroxisome yeast by ptrobajo on 2008-10-17 21:36:12 as along with 2 people dbenn roys
	Prediction of Peroxisomal Targeting Signal 1 Containing Proteins from Amino Acid Sequence [My Copy] Journal of Molecular Biology, Vol. 328, No. 3. (02 May 2003), pp. 581-592. by G. Neuberger posted to function localization motif nazanin peroxisome pts1 by ptrobajo on 2008-10-17 21:29:29 as
	Dissection of transient oxidative stress response in Saccharomyces cerevisiae by using DNA microarrays. [My Copy] Molecular biology of the cell, Vol. 13, No. 8. (August 2002), pp. 2783-2794. by M. G. Koerkamp, M. Rep, H. J. Bussemaker, et al.G. P. Hardy, A. Mul, K. Piekarska, C. A. Szigyarto, J. M. De Mattos, H. F. Tabak posted to expression gene microarray nazanin peroxisome yeast by ptrobajo on 2008-10-17 21:22:04 as
	In silicio search for genes encoding peroxisomal proteins in Saccharomyces cerevisiae. [My Copy] Cell biochemistry and biophysics, Vol. 32 Spring (2000), pp. 1-8. by A. J. Kal, E. H. Hettema, M. van den Berg, et al.M. G. Koerkamp, L. van Ijlst, B. Distel, H. F. Tabak posted to amc nazanin peroxisome yeast by ptrobajo on 2008-10-17 21:20:49 as
	Genome-wide analysis of signaling networks regulating fatty acid-induced gene expression and organelle biogenesis. [My Copy] The Journal of cell biology, Vol. 181, No. 2. (21 April 2008), pp. 281-292. by R. A. Saleem, B. Knoblach, F. D. Mast, et al.J. J. Smith, J. Boyle, C. M. Dobson, R. Long-O'Donnell, R. A. Rachubinski, J. D. Aitchison posted to biogenesis expression gene nazanin peroxisome signaling yeast by ptrobajo on 2008-10-17 21:16:21 as
	Transcriptional responses to fatty acid are coordinated by combinatorial control [My Copy] Mol Syst Biol, Vol. 3 (5 June 2007) by Jennifer J. Smith, Stephen A. Ramsey, Marcello Marelli, et al.Bruz Marzolf, Daehee Hwang, Ramsey A. Saleem, Richard A. Rachubinski, John D. Aitchison posted to acid fatty nazanin network peroxisome transcriptional by ptrobajo on 2008-10-17 21:12:35 as along with 1 person roys
	Transcriptome profiling to identify genes involved in peroxisome assembly and function. [My Copy] The Journal of cell biology, Vol. 158, No. 2. (22 July 2002), pp. 259-271. by J. J. Smith, M. Marelli, R. H. Christmas, et al.F. J. Vizeacoumar, D. J. Dilworth, T. Ideker, T. Galitski, K. Dimitrov, R. A. Rachubinski, J. D. Aitchison posted to expression gene nazanin peroxisome yeast by ptrobajo on 2008-10-17 21:09:35 as
	AraPerox. A Database of Putative Arabidopsis Proteins from Plant Peroxisomes [My Copy] Plant Physiol., Vol. 136, No. 1. (1 September 2004), pp. 2587-2608. by Sigrun Reumann, Changle Ma, Steffen Lemke, Lavanya Babujee posted to arabidopsis localization nazanin peroxisome by ptrobajo on 2008-10-16 22:03:59 as
	The return of the peroxisome [My Copy] J Cell Sci, Vol. 119, No. 6. (15 March 2006), pp. 989-994. by Adabella van der Zand, Ineke Braakman, Hans J. Geuze, Henk F. Tabak posted to biology nazanin peroxisome review by ptrobajo on 2008-10-16 22:02:43 as
	SVM-HUSTLE an iterative semi-supervised machine learning approach for pairwise protein remote homology detection [My Copy] Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 783-790. by Shah, R. Anuj, Oehmen, S. Christopher, Webb-Robertson, Bobbie-Jo posted to function homology nazanin protein remote semi-supervised svm by ptrobajo on 2008-09-15 20:25:24 as along with 1 person operon
	Mapping the Arabidopsis organelle proteome [My Copy] Vol. 103, No. 17. (25 April 2006), pp. 6518-6523. by Tom P. Dunkley, Svenja Hester, Ian P. Shadforth, et al.John Runions, Thilo Weimar, Sally L. Hanton, Julian L. Griffin, Conrad Bessant, Federica Brandizzi, Chris Hawes, Rod B. Watson, Paul Dupree, Kathryn S. Lilley posted to arabidopsis mass nazanin spectrometry by ptrobajo on 2008-08-25 16:25:28 as
	A mammalian organelle map by protein correlation profiling. [My Copy] Cell, Vol. 125, No. 1. (7 April 2006), pp. 187-199. by L. J. Foster, C. L. de Hoog, Y. Zhang, et al.Y. Zhang, X. Xie, V. K. Mootha, M. Mann posted to localization mass nazanin peroxisome spectrometry by ptrobajo on 2008-08-25 16:22:40 as along with 1 person kentsis
	SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data. [My Copy] Bioinformatics, Vol. 23, No. 11. (1 June 2007), pp. 1410-1417. by H. Shatkay, A. Höglund, S. Brady, T. Blum, P. Dönnes, O. Kohlbacher posted to integration localization mining nazanin peroxisome protein text by ptrobajo on 2008-08-08 12:03:12 as along with 4 people beete tienholin raiyar mdstobbe
	Refining Protein Subcellular Localization [My Copy] PLoS Computational Biology, Vol. 1, No. 6. (1 November 2005), e66. by Michelle S. Scott, Sara J. Calafell, David Y. Thomas, Michael T. Hallett posted to localization nazanin peroxisome subcellular by ptrobajo on 2008-08-07 14:35:15 as along with 4 people and 1 group dolhuis neils grahamc mdstobbe SNE
	Biological sequence classification utilizing positive and unlabeled data. [My Copy] Bioinformatics (14 March 2008) by Yuanyuan Xiao, Mark R R. Segal posted to classification nazanin sequence unlabeled by ptrobajo on 2008-07-30 12:15:29 as along with 4 people eckart_bindewald mdstobbe djkt guhjy
	A Mitochondrial Protein Compendium Elucidates Complex I Disease Biology [My Copy] Cell, Vol. 134, No. 1. (11 July 2008), pp. 112-123. by David J. Pagliarini, Sarah E. Calvo, Betty Chang, et al.Sunil A. Sheth, Scott B. Vafai, Shao-En Ong, Geoffrey A. Walford, Canny Sugiana, Avihu Boneh, William K. Chen, David E. Hill, Marc Vidal, James G. Evans, David R. Thorburn, Steven A. Carr, Vamsi K. Mootha posted to localization mitochondrial nazanin protein by ptrobajo on 2008-07-11 11:21:38 as along with 4 people brianb neils raiyar mdstobbe
	TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure. [My Copy] Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006) by B. T. Alako, D. Rainey, H. Nijveen, J. A. Leunissen posted to domain nazanin peroxisome phylogeny protein by ptrobajo on 2008-07-01 12:27:01 as along with 1 person gulkur
	A statistical framework for genomic data fusion. [My Copy] Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2626-2635. by G. R. Lanckriet, T. De Bie, N. Cristianini, M. I. Jordan, W. S. Noble posted to function integration kernel nazanin protein by ptrobajo on 2008-06-27 09:56:04 as along with 8 people isimpson dragonrez tmmurali jfr mbeautru nedwards carlk mdstobbe
	Proteomics Characterization of Mouse Kidney Peroxisomes by Tandem Mass Spectrometry and Protein Correlation Profiling [My Copy] Mol Cell Proteomics, Vol. 6, No. 12. (1 December 2007), pp. 2045-2057. by Sebastian Wiese, Thomas Gronemeyer, Rob Ofman, et al.Markus Kunze, Claudia P. Grou, Jose A. Almeida, Martin Eisenacher, Christian Stephan, Heiko Hayen, Lukas Schollenberger, Thomas Korosec, Hans R. Waterham, Wolfgang Schliebs, Ralf Erdmann, Johannes Berger, Helmut E. Meyer, Wilhelm Just, Jorge E. Azevedo, Ronald J. Wanders, Bettina Warscheid posted to mass mouse nazanin peroxisome spectrometry by ptrobajo on 2008-06-27 09:49:15 as along with 1 person mdstobbe
	Identifying novel peroxisomal proteins [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by John Hawkins, Donna Mahony, Stefan Maetschke, Mark Wakabayashi, Rohan D. Teasdale, Mikael Bodén posted to localization nazanin peroxisome protein pts1 by ptrobajo on 2008-06-27 09:47:40 as along with 2 people viktor21614 mdstobbe
	Peroxisome targeting signal 1: Is it really a simple tripeptide? [My Copy] Biochimica et Biophysica Acta (BBA) - Molecular Cell Research In Peroxisomes: Morphology, Function, Biogenesis and Disorders, Vol. 1763, No. 12. (December 2006), pp. 1565-1573. by Cecile Brocard, Andreas Hartig posted to localization nazanin peroxisome protein pts1 by ptrobajo on 2008-06-27 09:44:15 as along with 3 people fhaenel viktor21614 mdstobbe
	PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease [My Copy] Nucleic Acids Research, Vol. 35, No. Supplement 1. (January 2007), pp. D815-D822. by Schluter, Agatha, Fourcade, et al. Stephane, Domenech-Estevez, Enric, Gabaldon, Toni, Huerta-Cepas, Jaime, Berthommier, Guillaume, Ripp, Raymond, Wanders, J. A. Ronald, Poch, Olivier, Pujol, Aurora posted to database nazanin peroxisome by ptrobajo on 2008-06-27 09:43:06 as along with 1 person mdstobbe
	Locating proteins in the cell using TargetP, SignalP and related tools. [My Copy] Nature protocols, Vol. 2, No. 4. (2007), pp. 953-971. by Olof Emanuelsson, Søren Brunak, Gunnar von Heijne, Henrik Nielsen posted to localization nazanin protein tool by ptrobajo on 2008-06-27 09:24:15 as along with 6 people azazello dandaman nlapalu raiyar guhjy mdstobbe
	MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 10. (15 May 2006), pp. 1158-1165. by A. Höglund, P. Dönnes, T. Blum, H. W. Adolph, O. Kohlbacher posted to integration localization nazanin protein svm by ptrobajo on 2008-06-27 09:18:54 as along with 1 person mdstobbe

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capture	1
cardiac	1
case-control	1
causal	1
cervical	1
chemogenomics	1
chemosensitivity	1
chimera	1
chimpanzee	1
chip-chip	1
chip-seq	1
chromosome	1
classificatiion	1
cluster	1
cnv	1
code	1
coding	1
coevolution	1
co-expression	1
collateral	1
combinatorics	1
community	1
completeness	1
complex	1
compound	1
connection	1
conservation	1
conserved	1
constraint	1
context	1
context-specific	1
covariate	1
crm	1
crohn	1
curation	1
cytokine	1
cytoscape	1
dave	1
decision	1
deletions	1
detection	1
dictionary	1
diet	1
dietary	1
dimension	1
direct	1
dirichlet	1
discriminant	1
discriminatory	1
disorder	1
efficient	1
egfr	1
eigengene	1
element	1
elementary	1
em	1
e-map	1
empirical	1
endocytosis	1
ensemble	1
er	1
error	1
ethics	1
eukaryote	1
exon	1
expectation	1
experiment	1
fatty	1
feedback	1
flux	1
fly	1
focusing	1
fto	1
fuzzy	1
gametogenesis	1
gapdh	1
gastric	1
gaussian	1
gel	1
genomic	1
genomics	1
geometric	1
gerben	1
glioma	1
global	1
glucose	1
glucosykceramide	1
grammer	1
grid	1
groningen	1
group	1
gui	1
hapmap	1
heterogeneity	1
hexamer	1
hidden	1
hierarchy	1
histone	1
hmm	1
hnf	1
hub	1
humna	1
hypergraph	1
identifier	1
imaging	1
inbred_strains	1
individual	1
ineractome	1
insulin_resistance	1
interferon	1
intrinsic	1
islet	1
isoelectric	1
item	1
jamboree	1
joint	1
juvenile	1
kholodenko	1
kidney	1
laplacian	1
laser	1
learning	1
level	1
ligand	1
line	1
linear	1
literature	1
local	1
logic	1
lps	1
lung	1
lupus	1
macaques	1
machine	1
mammalian	1
maqc	1
markov	1
matching	1
maximization	1
measure	1
mechanistic	1
metabolite	1

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