ptrobajo's pathway [73 articles] Export

Recent papers added to ptrobajo's library classified by the tag pathway. You can also see everyone's pathway.

	KEGG for representation and analysis of molecular networks involving diseases and drugs [My Copy] Nucl. Acids Res. (30 October 2009), gkp896. by Minoru Kanehisa, Susumu Goto, Miho Furumichi, Mao Tanabe, Mika Hirakawa posted to pathway kegg drug disease by ptrobajo on 2009-11-05 19:47:55 as along with 1 person kemalpak
	HPD: an online integrated human pathway database enabling systems biology studies. [My Copy] BMC bioinformatics, Vol. 10 Suppl 11, No. Suppl 11. (2009), S5. by Sudhir R. Chowbina, Xiaogang Wu, Fan Zhang, et al.Peter M. Li, Ragini Pandey, Harini N. Kasamsetty, Jake Y. Chen posted to reactome pathway miranda kegg integration database by ptrobajo on 2009-10-16 13:43:26 as along with 1 person daforerog
	SubpathwayMiner: a software package for flexible identification of pathways. [My Copy] Nucleic acids research, Vol. 37, No. 19. (25 October 2009), gkp667. by Chunquan Li, Xia Li, Yingbo Miao, et al.Qianghu Wang, Wei Jiang, Chun Xu, Jing Li, Junwei Han, Fan Zhang, Binsheng Gong, Liangde Xu posted to pathway microarray kegg enrichment by ptrobajo on 2009-10-12 14:54:36 as along with 6 people and 1 group davidalee Vincent_Rouilly irenas renatomilani brianb neils Orengo Group Journal Picks
	Identification of genes involved in the same pathways using a Hidden Markov Model-based approach [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2945-2954. by Alexander Senf, Xue-wen Chen posted to pathway missing miranda microarray hmm gene by ptrobajo on 2009-10-12 13:24:11 as along with 2 people and 1 group poirel TRHvidsten Orengo Group Journal Picks
	Oncogenic Pathway Combinations Predict Clinical Prognosis in Gastric Cancer [My Copy] PLoS Genet, Vol. 5, No. 10. (2 October 2009), e1000676. by Chia H. Ooi, Tatiana Ivanova, Jeanie Wu, et al.Minghui Lee, Iain B. Tan, Jiong Tao, Lindsay Ward, Jun H. Koo, Veena Gopalakrishnan, Yansong Zhu, Lai L. Cheng, Julian Lee, Sun Y. Rha, Hyun C. Chung, Kumaresan Ganesan, Jimmy So, Khee C. Soo, Dennis Lim, Weng H. Chan, Wai K. Wong, David Bowtell, Khay G. Yeoh, Heike Grabsch, Alex Boussioutas, Patrick Tan posted to pathway gastric combination classification cancer by ptrobajo on 2009-10-02 19:38:13 as along with 3 people bertelsen brianb renatomilani
	From SNPs to pathways: integration of functional effect of sequence variations on models of cell signalling pathways. [My Copy] BMC bioinformatics, Vol. 10 Suppl 8, No. Suppl 8. (2009), S6. by Anna Bauer-Mehren, Laura I. Furlong, Michael Rautschka, Ferran Sanz posted to visualization snp signaling pathway network by ptrobajo on 2009-10-02 13:23:34 as along with 2 people dullhunk daforerog
	MMG: a probabilistic tool to identify submodules of metabolic pathways. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 8. (15 April 2008), pp. 1078-1084. by Guido Sanguinetti, Josselin Noirel, Phillip C. Wright posted to pathway npc module model mixture graph expression differential by ptrobajo on 2009-09-17 15:50:24 as along with 7 people pauldobson roys bertelsen ihpark guhjy tmmurali mdstobbe
	SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 13. (1 July 2007) by Oved Ourfali, Tomer Shlomi, Trey Ideker, Eytan Ruppin, Roded Sharan posted to signaling perturbation pathway network inference by ptrobajo on 2009-09-17 15:24:49 as along with 2 people roys guhjy
	Modeling Cancer Progression via Pathway Dependencies [My Copy] PLoS Comput Biol, Vol. 4, No. 2. (15 February 2008), e28. by Elena J. Edelman, Justin Guinney, Jen-Tsan Chi, Phillip G. Febbo, Sayan Mukherjee posted to progression pathway geneset classification cancer by ptrobajo on 2009-09-17 15:20:31 as along with 6 people bertelsen wei aviad_work ipark-kaist bootsy jfr
	Pathway and gene-set activation measurement from mRNA expression data: the tissue distribution of human pathways. [My Copy] Genome biology, Vol. 7, No. 10. (17 October 2006), R93. by David M. Levine, David R. Haynor, John C. Castle, et al.Sergey B. Stepaniants, Matteo Pellegrini, Mao Mao, Jason M. Johnson posted to tissue rosetta pathway humna geneset compendium by ptrobajo on 2009-09-17 10:44:25 as along with 7 people and 1 group daforerog ipark-kaist fisherp dragonrez jfr ealloza heliopais BioinfoCIPF
	Correcting ligands, metabolites, and pathways. [My Copy] BMC bioinformatics, Vol. 7 (28 November 2006), 517. by Martin A. Ott, Gert Vriend posted to stereochemistry pathway metabolism ligand kegg by ptrobajo on 2009-09-12 22:37:40 as along with 3 people BragilMassoud kuhn aswin
	Elucidating regulatory mechanisms downstream of a signaling pathway using informative experiments. [My Copy] Molecular systems biology, Vol. 5 (7 July 2009) by Ewa Szczurek, Irit Gat-Viks, Jerzy Tiuryn, Martin Vingron posted to signaling regulatory pathway experimental design cls-anton by ptrobajo on 2009-09-12 20:59:12 as along with 7 people chasmand reyez mluksza MarcelSchulz abhishek_tiwari mstumpf TRHvidsten
	Mapping similarities in mTOR pathway perturbations in mouse lupus nephritis models and human lupus nephritis. [My Copy] Arthritis research & therapy, Vol. 10, No. 6. (03 November 2008), R127. by Padmalatha S. Reddy, Holly M. Legault, Joseph P. Sypek, et al.Mark J. Collins, Elizabeth Goad, Samuel J. Goldman, Wei Liu, Stuart Murray, Andrew J. Dorner, Margot O'Toole posted to pathway mouse lupus human cross-species by ptrobajo on 2009-09-11 21:15:41 as
	Strategies and issues in the detection of pathway enrichment in genome-wide association studies. [My Copy] Human genetics, Vol. 126, No. 2. (1 August 2009), pp. 289-301. by Mun-Gwan G. Hong, Yudi Pawitan, Patrik K. Magnusson, Jonathan A. Prince posted to gwas pathway geneset enrichment assocation by ptrobajo on 2009-09-11 20:17:14 as along with 3 people daforerog guhjy wimufi
	Seeking unique and common biological themes in multiple gene lists or datasets: pathway pattern extraction pipeline for pathway-level comparative analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 200. by Ming Yi, Uma Mudunuri, Anney Che, Robert Stephens posted to pathway meta-analysis list geneset by ptrobajo on 2009-09-06 21:47:27 as along with 5 people and 1 group Effie shikin jmeppley renatomilani barriot NaCTeM
	A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (14 August 2009), e1000465. by Yuzhen Ye, Thomas G. Doak posted to reconstruction pathway miranda kegg genomic by ptrobajo on 2009-09-06 20:27:46 as along with 6 people and 1 group mstumpf barriot rdiaz michaelbarton kshameer djkt iSEEM
	A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2787-2794. by Andreas Keller, Christina Backes, Andreas Gerasch, et al.Michael Kaufmann, Oliver Kohlbacher, Eckart Meese, Hans-Peter Lenhof posted to pathway network geneset enrichment by ptrobajo on 2009-09-04 21:02:39 as along with 9 people and 1 group bertelsen jperkins tonamswish heliopais dolchan greg zufar rdiaz brianb Orengo Group Journal Picks
	Pathway databases and tools for their exploitation: benefits, current limitations and challenges [My Copy] Molecular Systems Biology, Vol. 5 (28 July 2009) by Anna Bauer-Mehren, Laura I. Furlong, Ferran Sanz posted to pathway miranda metabolic database by ptrobajo on 2009-09-03 14:33:59 as along with 8 people saman_vp dullhunk thomaskelder ngehlenborg allysonlister daforerog mingzhi renatomilani
	Metabolic pathfinding using RPAIR annotation. [My Copy] Journal of molecular biology, Vol. 388, No. 2. (1 May 2009), pp. 390-414. by Karoline Faust, Didier Croes, Jacques van Helden posted to pathway miranda metabolic kegg by ptrobajo on 2009-08-28 16:05:53 as along with 2 people Thaverkamp druvus
	Expression differences for genes involved in lignin, glutathione and sulphate metabolism in response to cadmium in Arabidopsis thaliana and the related Zn/Cd-hyperaccumulator Thlaspi caerulescens. [My Copy] Plant, cell & environment, Vol. 31, No. 3. (March 2008), pp. 301-324. by Judith E. van de Mortel, Henk Schat, Perry D. Moerland, et al.Emiel Ver Loren van Themaat, Sjoerd van der Ent, Hetty Blankestijn, Artak Ghandilyan, Styliani Tsiatsiani, Mark G. Aarts posted to pathway microarray biorange-matching by ptrobajo on 2009-08-27 09:29:43 as
	Fasting induces a biphasic adaptive metabolic response in murine small intestine. [My Copy] BMC genomics, Vol. 8 (09 October 2007), 361. by Milka Sokolović, Diederik Wehkamp, Aleksandar Sokolović, et al.Jacqueline Vermeulen, Lisa A. Gilhuijs-Pederson, Rachel I. van Haaften, Yuri Nikolsky, Chris T. Evelo, Antoine H. van Kampen, Theodorus B. Hakvoort, Wouter H. Lamers posted to pathway biorange-matching by ptrobajo on 2009-08-27 09:27:10 as
	Distinctive expression of chemokines and transforming growth factor-beta signaling in human arterial endothelium during atherosclerosis. [My Copy] The American journal of pathology, Vol. 171, No. 1. (July 2007), pp. 326-337. by Oscar L. Volger, Joost O. Fledderus, Natasja Kisters, et al.Ruud D. Fontijn, Perry D. Moerland, Johan Kuiper, Theo J. van Berkel, Ann-Pascale P. Bijnens, Mat J. Daemen, Hans Pannekoek, Anton J. Horrevoets posted to pathway biorange-matching by ptrobajo on 2009-08-27 09:26:29 as
	Modulation of glycosphingolipid metabolism significantly improves hepatic insulin sensitivity and reverses hepatic steatosis in mice [My Copy] Hepatology, Vol. 9999, No. 999A. (2009), NA. by Nora Bijl, Milka Sokolovic;, Carlos Vrins, et al.Mirjam Langeveld, Perry D. Moerland, Roelof Ottenhoff, Cindy P. A. A. van Roomen, Nike Claessen, Rolf G. Boot, Jan Aten, Albert K. Groen, Johannes M. F. G. Aerts, Marco van Eijk posted to pathway biorange-matching by ptrobajo on 2009-08-27 09:19:39 as
	Mining Biological Pathways Using WikiPathways Web Services [My Copy] PLoS ONE, Vol. 4, No. 7. (30 July 2009), e6447. by Thomas Kelder, Alexander R. Pico, Kristina Hanspers, Martijn P. van Iersel, Chris Evelo, Bruce R. Conklin posted to web service pathway biorange by ptrobajo on 2009-08-27 09:04:42 as along with 15 people and 1 group NicolSiegel irenas neilswainston fgibson dullhunk leemond31 najwvandijk renatomilani guhjy sjcockell druvus frohike AlexanderPico thomaskelder daforerog ConklinLab
	Eu.Gene Analyzer a tool for integrating gene expression data with pathway databases. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 19. (1 October 2007), pp. 2631-2632. by Duccio Cavalieri, Cinzia Castagnini, Simona Toti, et al.Karolina Maciag, Thomas Kelder, Luca Gambineri, Samuele Angioli, Piero Dolara posted to pathway enrichment biorange by ptrobajo on 2009-08-27 08:59:56 as along with 7 people guhjy tmmurali jfr aviad_work waszak AlexanderPico thomaskelder
	Suppression of inflammatory signaling in monocytes from patients with coronary artery disease. [My Copy] Journal of molecular and cellular cardiology, Vol. 46, No. 2. (February 2009), pp. 177-185. by Stephan H. Schirmer, Joost O. Fledderus, Anja M. van der Laan, et al.Tineke C. van der Pouw-Kraan, Perry D. Moerland, Oscar L. Volger, Josefien M. Baggen, Michael Böhm, Jan J. Piek, Anton J. Horrevoets, Niels van Royen posted to pathway gene expression biorange-matching by ptrobajo on 2009-08-27 08:55:29 as
	Analysis of gene expression identifies differentially expressed genes and pathways associated with lymphatic dissemination in patients with adenocarcinoma of the esophagus. [My Copy] Annals of surgical oncology, Vol. 15, No. 12. (1 December 2008), pp. 3459-3470. by S. M. Lagarde, P. E. Ver Loren van Themaat, P. D. Moerland, et al.L. A. Gilhuijs-Pederson, F. J. Ten Kate, P. H. Reitsma, A. H. van Kampen, A. H. Zwinderman, F. Baas, J. J. van Lanschot posted to pathway gene expression biorange-matching by ptrobajo on 2009-08-27 08:54:32 as
	The role of bioinformatics in pathway curation. [My Copy] Genes & nutrition, Vol. 3, No. 3-4. (December 2008), pp. 139-142. by A. S. Waagmeester, T. Kelder, C. T. Evelo posted to text pathway mining biorange by ptrobajo on 2009-08-27 08:51:48 as along with 3 people and 1 group andra guhjy thomaskelder BiGCaT Bioinformatics
	GAGE: generally applicable gene set enrichment for pathway analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 161. by Weijun Luo, Michael Friedman, Kerby Shedden, Kurt Hankenson, Peter Woolf posted to design enrichment geneset pathway by ptrobajo on 2009-06-02 04:32:55 as along with 12 people and 2 groups dipenps sotacam GustavoLacerda guhjy dswan VGreiff thegoose vinithepooh kshameer renatomilani cassj stajich Bioinformatics Mycology
	Pathway analysis of gene signatures predicting metastasis of node-negative primary breast cancer [My Copy] BMC Cancer, Vol. 7, No. 1. (25 September 2007), 182. by Jack Yu, Anieta Sieuwerts, Yi Zhang, et al.John Martens, Marcel Smid, Jan Klijn, Yixin Wang, John Foekens posted to breast cancer classification geneset signature pathway by ptrobajo on 2009-05-21 07:40:09 as along with 5 people and 2 groups suizan tonamswish Zephyrus jfr ealloza 8_01 BioinfoCIPF
	Microarray-based gene set analysis: a comparison of current methods [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 502. by Sarah Song, Michael Black posted to comparison geneset method microarray pathway by ptrobajo on 2009-03-10 11:51:53 as along with 26 people and 1 group bertelsen giovenko dipenps holecm lwaldron jfr ekotelnikova zufar buyske guhjy heliopais fhalbrit lptolik balicea daforerog Zephyrus irinamohorianu dswan shikin nuin hersh006 behindtherabbit colinDotAIBN druvus barriot GeeSharpMinor Roswell Cancer Crosstalk
	Using genome-wide pathway analysis to unravel the etiology of complex diseases. [My Copy] Genetic epidemiology, Vol. 33, No. 5. (July 2009), pp. 419-431. by Clara C. Elbers, Kristel R. van Eijk, Lude Franke, et al.Flip Mulder, Yvonne T. van der Schouw, Cisca Wijmenga, N. Charlotte Onland-Moret posted to association comparison snp pathway by ptrobajo on 2009-03-05 21:14:41 as along with 7 people and 1 group shikin daed guhjy thomaskelder AlexanderPico jdbowes pkonings ConklinLab
	Using Pathway Signatures as Means of Identifying Similarities among Microarray Experiments [My Copy] PLoS ONE, Vol. 4, No. 1. (6 January 2009), e4128. by Luca Beltrame, Lisa Rizzetto, Raffaele Paola, et al.Philippe Rocca-Serra, Luca Gambineri, Cristina Battaglia, Duccio Cavalieri posted to geneset microarray query signature pathway by ptrobajo on 2009-02-16 13:54:10 as along with 4 people lwaldron jfr rdiaz guhjy
	Identifying differential correlation in gene/pathway combinations [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (18 November 2008), 488. by Rosemary Braun, Leslie Cope, Giovanni Parmigiani posted to differential expression gene geneset pathway by ptrobajo on 2008-11-19 08:57:29 as along with 11 people dolchan dipenps zufar jfr shikin mdstobbe imina rdiaz renatomilani lptolik barriot
	Improved prediction of treatment response using microarrays and existing biological knowledge [My Copy] Pharmacogenomics, Vol. 7, No. 3. (April 2006), pp. 495-501. by Simon M. Lin, Jyothi Devakumar, Warren A. Kibbe posted to classification geneset ontology pathway by ptrobajo on 2008-11-18 21:35:58 as
	Inferring Pathway Activity toward Precise Disease Classification [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (7 November 2008), e1000217. by Eunjung Lee, Han-Yu Chuang, Jong-Won Kim, Trey Ideker, Doheon Lee posted to classification geneset microarray pathway by ptrobajo on 2008-11-07 20:43:27 as along with 13 people rschulz isimpson yaredo frohike ipark-kaist jfr aviad_work ajbattle zufar carlk renatomilani dragonrez tmmurali
	Causal inference in biomolecular pathways using a Bayesian network approach and an Implicit method [My Copy] Journal of Theoretical Biology, Vol. In Press, Corrected Proof by Ben, Afif Masmoudi, Ahmed Rebai posted to bayesian expression microarray network pathway by ptrobajo on 2008-10-26 21:33:47 as along with 1 person jxl
	Model-based analysis of interferon-beta induced signaling pathway [My Copy] Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2363-2369. by Jaroslaw Smieja, Mohammad Jamaluddin, Allan R. Brasier, Marek Kimmel posted to interferon modeling stephan pathway by ptrobajo on 2008-10-26 21:23:11 as
	PathCase: Pathways Database System [My Copy] Bioinformatics (26 August 2008), btn459. by B. Elliott, M. Kirac, A. Cakmak, et al.G. Yavas, S. Mayes, E. Cheng, Y. Wang, C. Gupta, G. Ozsoyoglu, Z. M. Ozsoyoglu posted to cyc database kegg miranda pathway by ptrobajo on 2008-10-26 21:02:35 as along with 10 people and 2 groups AlexanderPico jfr Zephyrus druvus mdstobbe dullhunk guhjy aconesa renatomilani thomaskelder ConklinLab Roswell Cancer Crosstalk
	Expression-based Pathway Signature Analysis (EPSA): Mining publicly available microarray data for insight into human disease. [My Copy] BMC medical genomics, Vol. 1, No. 1. (20 October 2008) by Jessica D. Tenenbaum, Michael G. Walker, Paul J. Utz, Atul J. Butte posted to compendium disease expression signature pathway by ptrobajo on 2008-10-26 20:20:39 as along with 9 people dolchan ipark-kaist jfr zufar daforerog imina guhjy huiminC oelemento
	Metabolic network visualization eliminating node redundance and preserving metabolic pathways. [My Copy] BMC systems biology, Vol. 1 (2007) by R. Bourqui, L. Cottret, V. Lacroix, et al.D. Auber, P. Mary, M. F. Sagot, F. Jourdan posted to metabolic miranda network visualization pathway by ptrobajo on 2008-10-24 09:50:39 as along with 2 people ywondimu hryk
	Inference of Protein Complex Activities from Chemical-Genetic Profile and Its Applications: Predicting Drug-Target Pathways [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000162. by Sangjo Han, Dongsup Kim posted to analysis drug factor target yeast pathway by ptrobajo on 2008-10-17 13:46:20 as along with 3 people guhjy friendpine aheilbut
	A systems biology approach for pathway level analysis [My Copy] Genome Research, Vol. 17, No. 10. (4 October 2007), pp. 1537-1545. by Sorin Draghici, Purvesh Khatri, Adi L. Tarca, et al.Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero posted to differential expression geneset microarray pathway by ptrobajo on 2008-10-17 10:44:18 as along with 22 people and 2 groups zufar bertelsen tonamswish gbloeb cgaugain pengchy tmmurali dragonrez jfr gurkanbebek grahamc shigepong zwang cabbagezs cerami xingxu shikin idonaldson Pao-Yang thomaskelder heliopais AlexanderPico Bioinformatics OPIG
	Identification of key processes underlying cancer phenotypes using biologic pathway analysis. [My Copy] PLoS ONE, Vol. 2, No. 5. (2007) by S. Efroni, C. F. Schaefer, K. H. Buetow posted to cancer classification geneset pathway by ptrobajo on 2008-10-16 16:37:59 as along with 8 people ipark-kaist zufar cswinburne dragonrez jfr AlexanderPico daed thomaskelder
	Dissecting complex transcriptional responses using pathway-level scores based on prior information. [My Copy] BMC bioinformatics, Vol. 8 Suppl 6 (2007) by H. J. Bussemaker, L. D. Ward, A. Boorsma posted to differential expression geneset review pathway by ptrobajo on 2008-10-16 16:37:16 as along with 3 people shikin guhjy bertelsen
	BioWarehouse: a bioinformatics database warehouse toolkit [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006), 170. by Thomas Lee, Yannick Pouliot, Valerie Wagner, et al.Priyanka Gupta, David S. Calvert, Jessica Tenenbaum, Peter Karp posted to database miranda warehouse pathway by ptrobajo on 2008-10-16 09:50:31 as along with 5 people operon druvus eweaver mircea Simplicity
	SLEPR: A Sample-Level Enrichment-Based Pathway Ranking Method — Seeking Biological Themes through Pathway-Level Consistency [My Copy] PLoS ONE, Vol. 3, No. 9. (2008), e3288. by Ming Yi, Robert M. Stephens posted to differential enrichment geneset sample pathway by ptrobajo on 2008-10-10 21:28:47 as along with 2 people jfr guhjy
	A critical examination of stoichiometric and path-finding approaches to metabolic pathways [My Copy] Brief Bioinform (24 April 2008), bbn018. by Francisco J. Planes, John E. Beasley posted to graph metabolic miranda stoichiometry pathway by ptrobajo on 2008-10-08 23:25:50 as along with 5 people pablocarb lflorez guhjy renatomilani shung
	Presenting and exploring biological pathways with PathVisio [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 399. by Martijn van Iersel, Thomas Kelder, Alexander Pico, et al.Kristina Hanspers, Susan Coort, Bruce Conklin, Chris Evelo posted to biorange pathvisio sp124 visualization pathway by ptrobajo on 2008-10-06 08:49:02 as along with 8 people and 3 groups jvb daforerog Effie jfr guhjy AlexanderPico renatomilani thomaskelder BiGCaT Bioinformatics NaCTeM ConklinLab
	Testing gene set enrichment for subset of genes: Sub-GSE [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (02 September 2008), 362. by Xiting Yan, Fengzhu Sun posted to differential enrichment expression geneset pathway by ptrobajo on 2008-10-01 09:14:40 as along with 6 people guhjy jfr trevinor ealloza barriot paszkows

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network	153
microarray	119
expression	90
cross-species	87
gene	80
pathway	73
miranda	60
geneset	58
nazanin	58
classification	52
mouse	50
protein	50
review	50
human	41
metabolic	37
peroxisome	35
cancer	34
integration	32
localization	31
cls-anton	30
compendium	30
mass	30
spectrometry	30
module	29
herman	28
model	25
proteomics	25
wouter	25
yeast	25
education	24
regulatory	24
seldi	24
differential	22
dragan	21
factor	21
disease	20
transcription	20
signature	19
enrichment	18
function	18
diabetes	15
drug	15
emiel	15
interaction	15
marcel	15
milka	15
signaling	15
biology	14
kegg	14
affymetrix	13
illumina	13
inference	13
knockout	13
sara	13
systems	13
analysis	12
bayesian	12
biorange-matching	12
breast	12
coexpression	12
microrna	12
association	11
graph	11
normalization	11
npc	11
snp	11
comparison	10
design	10
mining	10
missing	10
tissue	10
biorange	9
database	9
feature	9
metabolism	9
mitochondrial	9
perturbation	9
protein-protein	9
br45	8
clustering	8
genetic	8
gwas	8
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phenotype	8
selection	8
svm	8
text	8
transcriptional	8
arabidopsis	7
base	7
experimental	7
genome	7
kernel	7
motif	7
ontology	7
rat	7
reconstruction	7
sequence	7
sp124	7
target	7
annotation	6
biomarker	6
cell	6
data	6
functional	6
genome-wide	6
modeling	6
obesity	6
phylogeny	6
pre-processing	6
query	6
semi-supervised	6
software	6
alignment	5
bias	5
boosting	5
correlation	5
cross-platform	5
factorization	5
geo	5
kinase	5
map	5
meta-analysis	5
noise	5
oligo	5
pamgene	5
r	5
random	5
tumor	5
visualization	5
binding	4
boolean	4
brain	4
deep-sequencing	4
ecoli	4
effect	4
genotype	4
hybridization	4
identification	4
least	4
logical	4
lukas	4
mixture	4
mrna	4
mutation	4
nfkb	4
phosphorylaytion	4
ppar	4
prediction	4
programming	4
promoter	4
pts1	4
quantitative	4
radiation	4
sample	4
set	4
size	4
squares	4
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transcriptomics	4
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consensus	3
control	3
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disease-specific	3
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genetics	3
halleri	3
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housekeeping	3
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liver	3
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mapk	3
matrix	3
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web	3
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atherosclerosis	2
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concept	2
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correction	2
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cyc	2
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diagnosis	2
dna	2
domain	2
enzyme	2
epistasis	2
epxression	2
e-qtl	2
evolution	2
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fat	2
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go	2
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hotelling	2
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number	2
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ovarian	2
overlap	2
pathvisio	2
pca	2
peptide	2
phenome	2
plant	2
pooling	2
prior	2
protocol	2
reaction	2
reannotation	2
reduction	2
resistance	2
ribosomal	2
rnai	2
rodent	2
rosetta	2
r-package	2
service	2
similarity	2
small	2
spike-in	2
standards	2
statistical	2
subcellular	2
synthetic	2
syntren	2
system	2
testing	2
tiling	2
transitive	2
unlabeled	2
variation	2
wikipathways	2
zebrafish	2
70-gene	1
abundance	1
acgh	1
acid	1
adaptive	1
adipocyte	1
adult	1
aging	1
algorithm	1
alternating	1
amplification	1
angiogenic	1
animal	1
anova	1
anti-correlation	1
anton-cls	1
application	1
approximation	1
arrayexpress	1
atlas	1
attribute	1
backpropagation	1
bayes	1
bicluster	1
biclustering	1
bigg	1
bimodality	1
biomart	1
biopax	1
blast	1
blosum62	1
cadmium	1
cage	1
candidate	1
capture	1
cardiac	1
case-control	1
causal	1
cervical	1
chemogenomics	1
chemosensitivity	1
chimera	1
chimpanzee	1
chip-chip	1
chip-seq	1
chromosome	1
classificatiion	1
cluster	1
cnv	1
code	1
coding	1
coevolution	1
co-expression	1
collateral	1
combinatorics	1
community	1
completeness	1
complex	1
compound	1
connection	1
conservation	1
conserved	1
constraint	1
context	1
context-specific	1
covariate	1
crm	1
crohn	1
curation	1
cytokine	1
cytoscape	1
dave	1
decision	1
deletions	1
detection	1
dictionary	1
diet	1
dietary	1
dimension	1
direct	1
dirichlet	1
discriminant	1
discriminatory	1
disorder	1
efficient	1
egfr	1
eigengene	1
element	1
elementary	1
em	1
e-map	1
empirical	1
endocytosis	1
ensemble	1
er	1
error	1
ethics	1
eukaryote	1
exon	1
expectation	1
experiment	1
fatty	1
feedback	1
flux	1
fly	1
focusing	1
fto	1
fuzzy	1
gametogenesis	1
gapdh	1
gastric	1
gaussian	1
gel	1
genomic	1
genomics	1
geometric	1
gerben	1
glioma	1
global	1
glucose	1
glucosykceramide	1
grammer	1
grid	1
groningen	1
group	1
gui	1
hapmap	1
heterogeneity	1
hexamer	1
hidden	1
hierarchy	1
histone	1
hmm	1
hnf	1
hub	1
humna	1
hypergraph	1
identifier	1
imaging	1
inbred_strains	1
individual	1
ineractome	1
insulin_resistance	1
interferon	1
intrinsic	1
islet	1
isoelectric	1
item	1
jamboree	1
joint	1
juvenile	1
kholodenko	1
kidney	1
laplacian	1
laser	1
learning	1
level	1
ligand	1
line	1
linear	1
literature	1
local	1
logic	1
lps	1
lung	1
lupus	1
macaques	1
machine	1
mammalian	1
maqc	1
markov	1
matching	1
maximization	1
measure	1
mechanistic	1
metabolite	1

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