ptrobajo's protein [50 articles] Export

Recent papers added to ptrobajo's library classified by the tag protein. You can also see everyone's protein.

	A Complex-based Reconstruction of the Saccharomyces cerevisiae Interactome [My Copy] Mol Cell Proteomics, Vol. 8, No. 6. (1 June 2009), pp. 1361-1381. by Haidong Wang, Boyko Kakaradov, Sean R. Collins, et al.Lena Karotki, Dorothea Fiedler, Michael Shales, Kevan M. Shokat, Tobias C. Walther, Nevan J. Krogan, Daphne Koller posted to yeast protein overlap network integration complex cluster boosting by ptrobajo on 2009-10-14 20:50:24 as along with 2 people carlk anf
	The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes. [My Copy] Genome research, Vol. 19, No. 7. (4 July 2009), pp. 1316-1323. by Kim D. Pruitt, Jennifer Harrow, Rachel A. Harte, et al.Craig Wallin, Mark Diekhans, Donna R. Maglott, Steve Searle, Catherine M. Farrell, Jane E. Loveland, Barbara J. Ruef, Elizabeth Hart, Marie-Marthe M. Suner, Melissa J. Landrum, Bronwen Aken, Sarah Ayling, Robert Baertsch, Julio Fernandez-Banet, Joshua L. Cherry, Val Curwen, Michael Dicuccio, Manolis Kellis, Jennifer Lee, Michael F. Lin, Michael Schuster, Andrew Shkeda, Clara Amid, Garth Brown, Oksana Dukhanina, Adam Frankish, Jennifer Hart, Bonnie L. Maidak, Jonathan Mudge, Michael R. Murphy, Terence Murphy, Jeena Rajan, Bhanu Rajput, Lillian D. Riddick, Catherine Snow, Charles Steward, David Webb, Janet A. Weber, Laurens Wilming, Wenyu Wu, Ewan Birney, David Haussler, Tim Hubbard, James Ostell, Richard Durbin, David Lipman posted to protein mouse human gene cross-species consensus coding by ptrobajo on 2009-10-14 20:45:28 as along with 4 people and 1 group megraw timhubbard idonaldson ppgardne Journal picks
	Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics [My Copy] PLoS Biol, Vol. 7, No. 10. (6 October 2009), e1000213. by Zhihua Li, Insuk Lee, Emily Moradi, Nai-Jung Hung, Arlen W. Johnson, Edward M. Marcotte posted to ribosomal protein network nazanin localization function by ptrobajo on 2009-10-06 21:23:58 as along with 4 people carlk tmmurali djkt lp2
	Local cytokine concentrations and oxygen pressure are related to maturation of the collateral circulation in humans. [My Copy] Journal of the American College of Cardiology, Vol. 53, No. 23. (9 June 2009), pp. 2141-2147. by Stephan H. Schirmer, Niels van Royen, Perry D. Moerland, et al.Joost O. Fledderus, José P. Henriques, René J. van der Schaaf, Marije M. Vis, Jan Baan, Karel T. Koch, Anton J. Horrevoets, Imo E. Hoefer, Jan J. Piek posted to protein cytokine collateral by ptrobajo on 2009-09-29 16:12:26 as
	Predicting protein function by machine learning on amino acid sequences--a critical evaluation. [My Copy] BMC genomics, Vol. 8 (20 March 2007), 78. by Ali Al-Shahib, Rainer Breitling, David R. Gilbert posted to sequence protein prediction function by ptrobajo on 2009-09-17 09:54:37 as
	Computational prediction of cancer-gene function. [My Copy] Nature reviews. Cancer, Vol. 7, No. 1. (14 January 2007), pp. 23-34. by Pingzhao Hu, Gary Bader, Dennis A. Wigle, Andrew Emili posted to protein network miranda function education cancer by ptrobajo on 2009-09-17 09:51:05 as along with 7 people and 1 group guhjy jfr ealloza emb51 Garamonfok cerami srp33 BioinfoCIPF
	A novel stepwise analysis procedure of genome-wide expression profiles identifies transcript signatures of thiamine genes as classifiers of mitochondrial mutants. [My Copy] Yeast (Chichester, England), Vol. 25, No. 2. (February 2008), pp. 129-140. by L. M. Eijssen, P. J. Lindsey, R. Peeters, et al.R. L. Westra, R. G. van Eijsden, M. Bolotin-Fukuhara, H. J. Smeets, R. F. Vlietinck posted to protein nazanin mutant mitochondrial knockout gene function expression by ptrobajo on 2009-09-17 09:46:03 as
	Mitochondrial proteome evolution and genetic disease. [My Copy] Biochimica et biophysica acta (26 March 2009) by Martijn A. Huynen, Mattias de Hollander, Radek Szklarczyk posted to protein mitochondrial localization evolution disease by ptrobajo on 2009-09-14 20:08:31 as
	Network-based prediction of protein function [My Copy] Molecular Systems Biology, Vol. 3 (13 March 2007) by Roded Sharan, Igor Ulitsky, Ron Shamir posted to review protein network function education by ptrobajo on 2009-09-12 22:56:34 as along with 24 people and 1 group cerca kiekyon AbnerCYH roys jwhitney dragonrez Sonix mtaschuk babakap phoenixzxl druvus pengchy jjray cmmorel wnpx julius mikaelhuss massivemayhem cjeans iris_2001 karfunkel mingzhi ellakat carlk SysbioMPI-TCells
	Probabilistic Protein Function Prediction from Heterogeneous Genome-Wide Data [My Copy] PLoS ONE, Vol. 2, No. 3. (2007), e337. by Naoki Nariai, Eric D. Kolaczyk, Simon Kasif posted to protein network miranda integration function by ptrobajo on 2009-09-12 22:42:55 as along with 4 people cerca sgoetz wilbur tmmurali
	Importing mitochondrial proteins: machineries and mechanisms. [My Copy] Cell, Vol. 138, No. 4. (21 August 2009), pp. 628-644. by Agnieszka Chacinska, Carla M. Koehler, Dusanka Milenkovic, Trevor Lithgow, Nikolaus Pfanner posted to review protein nazanin mitochondrial localization by ptrobajo on 2009-09-11 20:48:21 as
	MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (1 September 2009), 274. by Torsten Blum, Sebastian Briesemeister, Oliver Kohlbacher posted to svm protein phylogeny ontology nazanin localization gene by ptrobajo on 2009-09-04 21:00:10 as along with 1 person operon
	Network-assisted protein identification and data interpretation in shotgun proteomics [My Copy] Molecular Systems Biology, Vol. 5 (18 August 2009) by Jing Li, Lisa J. Zimmerman, Byung-Hoon Park, David L. Tabb, Daniel C. Liebler, Bing Zhang posted to proteomics protein npc network identification by ptrobajo on 2009-09-03 14:42:00 as along with 4 people reyez brianb danmaclean biomcgary
	Mining gene functional networks to improve mass-spectrometry-based protein identification [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2955-2961. by Smriti R. Ramakrishnan, Christine Vogel, Taejoon Kwon, Luiz O. Penalva, Edward M. Marcotte, Daniel P. Miranker posted to proteomics protein npc network identification by ptrobajo on 2009-09-03 14:41:35 as along with 1 person tmmurali
	Dynamic modularity in protein interaction networks predicts breast cancer outcome. [My Copy] Nature biotechnology, Vol. 27, No. 2. (1 February 2009), pp. 199-204. by Ian W. Taylor, Rune Linding, David Warde-Farley, et al.Yongmei Liu, Catia Pesquita, Daniel Faria, Shelley Bull, Tony Pawson, Quaid Morris, Jeffrey L. Wrana posted to breast cancer hub interaction network protein by ptrobajo on 2009-03-31 16:23:26 as along with 14 people and 1 group ukhan zufar guhjy jfr frohike fenghezi jaimie nedwards dakelley absterga phoenixzxl grahamc provero brianb cube_and_beyond
	Approaching complete peroxisome characterization by gas-phase fractionation. [My Copy] Electrophoresis, Vol. 23, No. 18. (September 2002), pp. 3205-3216. by E. C. Yi, M. Marelli, H. Lee, et al.S. O. Purvine, R. Aebersold, J. D. Aitchison, D. R. Goodlett posted to localization mass nazanin peroxisome protein spectrometry yeast by ptrobajo on 2008-11-11 08:39:58 as
	Predicting subcellular localization via protein motif co-occurrence. [My Copy] Genome research, Vol. 14, No. 10A. (October 2004), pp. 1957-1966. by M. S. Scott, D. Y. Thomas, M. T. Hallett posted to localization nazanin peroxisome protein by ptrobajo on 2008-11-09 20:24:21 as along with 1 person tienholin
	'Unite and conquer': enhanced prediction of protein subcellular localization by integrating multiple specialized tools [My Copy] BMC Bioinformatics, Vol. 8 (29 October 2007), 420. by Yao-Qing Shen, Gertraud Burger posted to integration localization nazanin protein by ptrobajo on 2008-11-08 21:40:31 as along with 3 people tienholin iris_2001 mdstobbe
	Approaching complete peroxisome characterization by gas-phase fractionation [My Copy] ELECTROPHORESIS, Vol. 23, No. 18. (2002), pp. 3205-3216. by Eugene C. Yi, Marcello Marelli, Hookeun Lee, et al.Samuel O. Purvine, Ruedi Aebersold, John D. Aitchison, David R. Goodlett posted to localization mass nazanin peroxisome protein spectrometry yeast by ptrobajo on 2008-11-06 08:37:59 as
	Origin and evolution of the peroxisomal proteome [My Copy] Biology Direct, Vol. 1 (23 March 2006), 8. by Toni Gabaldón, Berend Snel, Frank van Zimmeren, Wieger Hemrika, Henk Tabak, Martijn A. Huynen posted to evolution localization nazanin peroxisome protein by ptrobajo on 2008-11-06 08:31:27 as along with 2 people tny dquest
	In-depth Analysis of the Adipocyte Proteome by Mass Spectrometry and Bioinformatics [My Copy] Mol Cell Proteomics, Vol. 6, No. 7. (1 July 2007), pp. 1257-1273. by Jun Adachi, Chanchal Kumar, Yanling Zhang, Matthias Mann posted to adipocyte localization mass nazanin prioritization protein spectrometry by ptrobajo on 2008-11-04 14:49:36 as along with 1 person barriot
	Rat liver peroxisomes after fibrate treatment. A survey using quantitative mass spectrometry. [My Copy] The Journal of biological chemistry, Vol. 282, No. 32. (10 August 2007), pp. 23055-23069. by M. Islinger, G. H. Lüers, K. W. Li, M. Loos, A. Völkl posted to localization mass nazanin peroxisome protein rat spectrometry by ptrobajo on 2008-11-04 14:39:24 as
	Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling. [My Copy] Cell, Vol. 125, No. 1. (7 April 2006), pp. 173-186. by T. Kislinger, B. Cox, A. Kannan, et al.C. Chung, P. Hu, A. Ignatchenko, M. S. Scott, A. O. Gramolini, Q. Morris, M. T. Hallett, J. Rossant, T. R. Hughes, B. Frey, A. Emili posted to localization mass mouse nazanin protein spectrometry by ptrobajo on 2008-11-04 14:28:53 as along with 3 people tienholin balicea kristen
	Assessing Systems Properties of Yeast Mitochondria through an Interaction Map of the Organelle [My Copy] PLoS Genetics, Vol. 2, No. 10. (1 October 2006), e170. by Fabiana Perocchi, Lars J. Jensen, Julien Gagneur, et al.Uwe Ahting, Christian von Mering, Peer Bork, Holger Prokisch, Lars M. Steinmetz posted to localization mitochondrial nazanin protein yeast by ptrobajo on 2008-11-04 10:00:38 as along with 3 people mdstobbe kristen larsjuhljensen
	Mimicking cellular sorting improves prediction of subcellular localization. [My Copy] J Mol Biol, Vol. 348, No. 1. (22 April 2005), pp. 85-100. by R. Nair, B. Rost posted to hierarchy localization nazanin protein svm by ptrobajo on 2008-11-04 09:35:41 as along with 1 person Cortel
	The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000160. by Marco Punta, Yanay Ofran posted to function localization nazanin protein by ptrobajo on 2008-11-03 16:04:16 as along with 20 people and 1 group ucbcjbm pansapiens kiekyon Thaverkamp niallhaslam daforerog Zalanszabo bpcusack Katje joseph_x_zhou taguchi sjcockell markchen chad_davis druvus mdstobbe giovenko nilanjanroy reyez GeeSharpMinor microbiology_nijmegen
	Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species [My Copy] Nucl. Acids Res. (4 October 2008), gkn619. by Kiyoung Lee, Han-Yu Chuang, Andreas Beyer, et al.Min-Kyung Sung, Won-Ki Huh, Bonghee Lee, Trey Ideker posted to fly human localization nazanin network protein yeast by ptrobajo on 2008-10-27 14:34:31 as along with 6 people tienholin carlk brianb neils grahamc giovenko
	Improving Subcellular Localization Prediction using Text Classification and the Gene Ontology [My Copy] Bioinformatics (26 August 2008), btn463. by Alona Fyshe, Yifeng Liu, Duane Szafron, Russ Greiner, Paul Lu posted to gene localization mining nazanin ontology protein text by ptrobajo on 2008-10-26 20:53:36 as along with 3 people guhjy grahamc phoenixzxl
	Determinants of protein abundance and translation efficiency in S. cerevisiae. [My Copy] PLoS computational biology, Vol. 3, No. 12. (21 December 2007), e248. by Tamir Tuller, Martin Kupiec, Eytan Ruppin posted to abundance expression model protein by ptrobajo on 2008-10-23 14:48:24 as
	Employing conservation of co-expression to improve functional inference [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Carsten Daub, Erik Sonnhammer posted to coexpression cross-species function protein by ptrobajo on 2008-10-08 23:24:49 as along with 6 people druvus pengchy natstreet lptolik klo barriot
	Predicting Pathway Membership via Domain Signatures [My Copy] Bioinformatics (1 August 2008), btn403. by Holger Frohlich, Mark Fellmann, Holger Sultmann, Annemarie Poustka, Tim Beissbarth posted to domain miranda protein pathway by ptrobajo on 2008-09-27 20:56:26 as along with 9 people le-gal druvus jameswasmuth kshameer jfr barriot mdstobbe phoenixzxl guhjy
	SVM-HUSTLE an iterative semi-supervised machine learning approach for pairwise protein remote homology detection [My Copy] Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 783-790. by Shah, R. Anuj, Oehmen, S. Christopher, Webb-Robertson, Bobbie-Jo posted to function homology nazanin protein remote semi-supervised svm by ptrobajo on 2008-09-15 20:25:24 as along with 1 person operon
	SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data. [My Copy] Bioinformatics, Vol. 23, No. 11. (1 June 2007), pp. 1410-1417. by H. Shatkay, A. Höglund, S. Brady, T. Blum, P. Dönnes, O. Kohlbacher posted to integration localization mining nazanin peroxisome protein text by ptrobajo on 2008-08-08 12:03:12 as along with 4 people beete tienholin raiyar mdstobbe
	Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. [My Copy] Nature biotechnology, Vol. 25, No. 1. (January 2007), pp. 117-124. by Peng Lu, Christine Vogel, Rong Wang, Xin Yao, Edward M. Marcotte posted to expression protein quantitative transcription translation by ptrobajo on 2008-07-12 21:18:29 as along with 8 people and 1 group guhjy balabu nickluscombe aswin nicoleq dylan77 nedwards caseybrown EBI-regulation
	A Mitochondrial Protein Compendium Elucidates Complex I Disease Biology [My Copy] Cell, Vol. 134, No. 1. (11 July 2008), pp. 112-123. by David J. Pagliarini, Sarah E. Calvo, Betty Chang, et al.Sunil A. Sheth, Scott B. Vafai, Shao-En Ong, Geoffrey A. Walford, Canny Sugiana, Avihu Boneh, William K. Chen, David E. Hill, Marc Vidal, James G. Evans, David R. Thorburn, Steven A. Carr, Vamsi K. Mootha posted to localization mitochondrial nazanin protein by ptrobajo on 2008-07-11 11:21:38 as along with 4 people brianb neils raiyar mdstobbe
	TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure. [My Copy] Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006) by B. T. Alako, D. Rainey, H. Nijveen, J. A. Leunissen posted to domain nazanin peroxisome phylogeny protein by ptrobajo on 2008-07-01 12:27:01 as along with 1 person gulkur
	A statistical framework for genomic data fusion. [My Copy] Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2626-2635. by G. R. Lanckriet, T. De Bie, N. Cristianini, M. I. Jordan, W. S. Noble posted to function integration kernel nazanin protein by ptrobajo on 2008-06-27 09:56:04 as along with 8 people isimpson dragonrez tmmurali jfr mbeautru nedwards carlk mdstobbe
	Identifying novel peroxisomal proteins [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by John Hawkins, Donna Mahony, Stefan Maetschke, Mark Wakabayashi, Rohan D. Teasdale, Mikael Bodén posted to localization nazanin peroxisome protein pts1 by ptrobajo on 2008-06-27 09:47:40 as along with 2 people viktor21614 mdstobbe
	Peroxisome targeting signal 1: Is it really a simple tripeptide? [My Copy] Biochimica et Biophysica Acta (BBA) - Molecular Cell Research In Peroxisomes: Morphology, Function, Biogenesis and Disorders, Vol. 1763, No. 12. (December 2006), pp. 1565-1573. by Cecile Brocard, Andreas Hartig posted to localization nazanin peroxisome protein pts1 by ptrobajo on 2008-06-27 09:44:15 as along with 3 people fhaenel viktor21614 mdstobbe
	Locating proteins in the cell using TargetP, SignalP and related tools. [My Copy] Nature protocols, Vol. 2, No. 4. (2007), pp. 953-971. by Olof Emanuelsson, Søren Brunak, Gunnar von Heijne, Henrik Nielsen posted to localization nazanin protein tool by ptrobajo on 2008-06-27 09:24:15 as along with 6 people azazello dandaman nlapalu raiyar guhjy mdstobbe
	MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 10. (15 May 2006), pp. 1158-1165. by A. Höglund, P. Dönnes, T. Blum, H. W. Adolph, O. Kohlbacher posted to integration localization nazanin protein svm by ptrobajo on 2008-06-27 09:18:54 as along with 1 person mdstobbe
	In silico prediction of the peroxisomal proteome in fungi, plants and animals. [My Copy] Journal of molecular biology, Vol. 330, No. 2. (4 July 2003), pp. 443-456. by O. Emanuelsson, A. Elofsson, G. von Heijne, S. Cristóbal posted to localization nazanin peroxisome protein pts1 by ptrobajo on 2008-06-27 09:16:18 as along with 1 person mdstobbe
	Systematic identification of human mitochondrial disease genes through integrative genomics [My Copy] Nat Genet, Vol. 38, No. 5. (02 May 2006), pp. 576-582. by Sarah Calvo, Mohit Jain, Xiaohui Xie, et al.Sunil A. Sheth, Betty Chang, Olga A. Goldberger, Antonella Spinazzola, Massimo Zeviani, Steven A. Carr, Vamsi K. Mootha posted to integration localization mitochondrial nazanin protein by ptrobajo on 2008-06-27 09:14:29 as along with 6 people and 2 groups avilella kentsis balicea nirfriedman raiyar mdstobbe Ensembl Compara citations steinmetzlab
	Protein networks in disease. [My Copy] Genome research, Vol. 18, No. 4. (1 April 2008), pp. 644-652. by Trey Ideker, Roded Sharan posted to disease geneset network protein review by ptrobajo on 2008-06-18 13:49:12 as along with 27 people shikin carlk isimpson chica saket zufar kaarsinogen giovenko guhjy balicea tmmurali Borelli jwdietrich frohike bootsy nedwards roys mclarenv phoenixzxl brianb schuylrp jfr paolomarcatili gracio thomaskelder raiyar zwang
	eQED: an efficient method for interpreting eQTL associations using protein networks. [My Copy] Molecular systems biology, Vol. 4 (4 March 2008) by Silpa Suthram, Andreas Beyer, Richard M. Karp, Yonina Eldar, Trey Ideker posted to network protein qtl by ptrobajo on 2008-06-18 12:45:58 as along with 9 people zufar druvus zwang biomcgary jo_davies guhjy caseybrown thomaskelder APRegier
	A peroxisomal acyltransferase in mouse identifies a novel pathway for taurine conjugation of fatty acids. [My Copy] The FASEB journal : official publication of the Federation of American Societies for Experimental Biology, Vol. 21, No. 1. (January 2007), pp. 99-107. by S. J. Reilly, E. M. O'Shea, U. Andersson, J. O'Byrne, S. E. Alexson, M. C. Hunt posted to mouse nazanin peroxisome protein pathway by ptrobajo on 2008-05-05 22:06:37 as
	Quantitative mass spectrometry reveals a role for the GTPase Rho1p in actin organization on the peroxisome membrane. [My Copy] The Journal of cell biology, Vol. 167, No. 6. (20 December 2004), pp. 1099-1112. by M. Marelli, J. J. Smith, S. Jung, et al.E. Yi, A. I. Nesvizhskii, R. H. Christmas, R. A. Saleem, Y. Y. Tam, A. Fagarasanu, D. R. Goodlett, R. Aebersold, R. A. Rachubinski, J. D. Aitchison posted to nazanin peroxisome protein proteomics yeast by ptrobajo on 2008-05-05 22:01:22 as
	Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms. [My Copy] The Plant cell, Vol. 19, No. 10. (October 2007), pp. 3170-3193. by S. Reumann, L. Babujee, C. Ma, et al.S. Wienkoop, T. Siemsen, G. E. Antonicelli, N. Rasche, F. Lüder, W. Weckwerth, O. Jahn posted to arabidopsis nazanin peroxisome protein proteomics by ptrobajo on 2008-05-05 21:59:50 as
	Adaptive diffusion kernel learning from biological networks for protein function prediction [My Copy] BMC Bioinformatics, Vol. 9 (25 March 2008), 162. by Liang Sun, Shuiwang Ji, Jieping Ye posted to adaptive function kernel miranda protein by ptrobajo on 2008-04-05 21:57:25 as along with 5 people aheilbut ajbattle dragonrez bootsy barriot
	Network-based classification of breast cancer metastasis. [My Copy] Molecular systems biology, Vol. 3 (16 October 2007) by Han-Yu Y. Chuang, Eunjung Lee, Yu-Tsueng T. Liu, Doheon Lee, Trey Ideker posted to classification geneset interaction network protein pathway by ptrobajo on 2008-03-30 23:16:40 as along with 29 people and 4 groups yaredo fesousa ipark-kaist aviad_work AbnerCYH zufar provero jmuhlich Zephyrus ggallone giovenko winterschlaefer isimpson ihpark bertelsen jfr kengg frohike mikaelhuss cjeans zwang cerami abhattac shikin oelemento roys dap5087 saman_vp verdicchio Complex Networks Jarman Lab Bioinformatics GeneGo

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network	153
microarray	119
expression	90
cross-species	87
gene	80
pathway	73
miranda	60
geneset	58
nazanin	58
classification	52
mouse	50
protein	50
review	50
human	41
metabolic	37
peroxisome	35
cancer	34
integration	32
localization	31
cls-anton	30
compendium	30
mass	30
spectrometry	30
module	29
herman	28
model	25
proteomics	25
wouter	25
yeast	25
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regulatory	24
seldi	24
differential	22
dragan	21
factor	21
disease	20
transcription	20
signature	19
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function	18
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drug	15
emiel	15
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marcel	15
milka	15
signaling	15
biology	14
kegg	14
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illumina	13
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knockout	13
sara	13
systems	13
analysis	12
bayesian	12
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breast	12
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microrna	12
association	11
graph	11
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npc	11
snp	11
comparison	10
design	10
mining	10
missing	10
tissue	10
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database	9
feature	9
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perturbation	9
protein-protein	9
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svm	8
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rat	7
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software	6
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boosting	5
correlation	5
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geo	5
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r	5
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ecoli	4
effect	4
genotype	4
hybridization	4
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least	4
logical	4
lukas	4
mixture	4
mrna	4
mutation	4
nfkb	4
phosphorylaytion	4
ppar	4
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pts1	4
quantitative	4
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set	4
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fasting	3
forest	3
genetics	3
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insulin	3
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liver	3
man	3
mapk	3
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stephan	3
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thaliana	3
time	3
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trait	3
web	3
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carsten	2
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clinical	2
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copy	2
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cross-hybridization	2
cyc	2
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diagnosis	2
dna	2
domain	2
enzyme	2
epistasis	2
epxression	2
e-qtl	2
evolution	2
evolutionary	2
fat	2
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frequent	2
fruitfly	2
go	2
gsea	2
guidelines	2
hierarchical	2
homology	2
hotelling	2
immune	2
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interactome	2
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interval	2
itemset	2
kinetic	2
lasso	2
lda	2
list	2
macrophage	2
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metagene	2
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method	2
methodology	2
miape	2
micorarray	2
mirna	2
molecular	2
molecule	2
mutant	2
next-generation	2
number	2
organization	2
ovarian	2
overlap	2
pathvisio	2
pca	2
peptide	2
phenome	2
plant	2
pooling	2
prior	2
protocol	2
reaction	2
reannotation	2
reduction	2
resistance	2
ribosomal	2
rnai	2
rodent	2
rosetta	2
r-package	2
service	2
similarity	2
small	2
spike-in	2
standards	2
statistical	2
subcellular	2
synthetic	2
syntren	2
system	2
testing	2
tiling	2
transitive	2
unlabeled	2
variation	2
wikipathways	2
zebrafish	2
70-gene	1
abundance	1
acgh	1
acid	1
adaptive	1
adipocyte	1
adult	1
aging	1
algorithm	1
alternating	1
amplification	1
angiogenic	1
animal	1
anova	1
anti-correlation	1
anton-cls	1
application	1
approximation	1
arrayexpress	1
atlas	1
attribute	1
backpropagation	1
bayes	1
bicluster	1
biclustering	1
bigg	1
bimodality	1
biomart	1
biopax	1
blast	1
blosum62	1
cadmium	1
cage	1
candidate	1
capture	1
cardiac	1
case-control	1
causal	1
cervical	1
chemogenomics	1
chemosensitivity	1
chimera	1
chimpanzee	1
chip-chip	1
chip-seq	1
chromosome	1
classificatiion	1
cluster	1
cnv	1
code	1
coding	1
coevolution	1
co-expression	1
collateral	1
combinatorics	1
community	1
completeness	1
complex	1
compound	1
connection	1
conservation	1
conserved	1
constraint	1
context	1
context-specific	1
covariate	1
crm	1
crohn	1
curation	1
cytokine	1
cytoscape	1
dave	1
decision	1
deletions	1
detection	1
dictionary	1
diet	1
dietary	1
dimension	1
direct	1
dirichlet	1
discriminant	1
discriminatory	1
disorder	1
efficient	1
egfr	1
eigengene	1
element	1
elementary	1
em	1
e-map	1
empirical	1
endocytosis	1
ensemble	1
er	1
error	1
ethics	1
eukaryote	1
exon	1
expectation	1
experiment	1
fatty	1
feedback	1
flux	1
fly	1
focusing	1
fto	1
fuzzy	1
gametogenesis	1
gapdh	1
gastric	1
gaussian	1
gel	1
genomic	1
genomics	1
geometric	1
gerben	1
glioma	1
global	1
glucose	1
glucosykceramide	1
grammer	1
grid	1
groningen	1
group	1
gui	1
hapmap	1
heterogeneity	1
hexamer	1
hidden	1
hierarchy	1
histone	1
hmm	1
hnf	1
hub	1
humna	1
hypergraph	1
identifier	1
imaging	1
inbred_strains	1
individual	1
ineractome	1
insulin_resistance	1
interferon	1
intrinsic	1
islet	1
isoelectric	1
item	1
jamboree	1
joint	1
juvenile	1
kholodenko	1
kidney	1
laplacian	1
laser	1
learning	1
level	1
ligand	1
line	1
linear	1
literature	1
local	1
logic	1
lps	1
lung	1
lupus	1
macaques	1
machine	1
mammalian	1
maqc	1
markov	1
matching	1
maximization	1
measure	1
mechanistic	1
metabolite	1

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