raiyar's integration [34 articles] Export

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	Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis. [My Copy] PLoS genetics, Vol. 5, No. 3. (20 March 2009), e1000407. by David C. Hess, Chad L. Myers, Curtis Huttenhower, et al.Matthew A. Hibbs, Alicia P. Hayes, Jadine Paw, John J. Clore, Rosa M. Mendoza, Bryan S. Luis, Corey Nislow, Guri Giaever, Michael Costanzo, Olga G. Troyanskaya, Amy A. Caudy posted to analysis integration litrev mitochondria morphology parts-list prediction ym2008 by raiyar on 2009-05-29 14:48:17 as along with 1 person tmmurali
	Integrative biology a strategy for systems biomedicine [My Copy] Nature Reviews Genetics, Vol. 10, No. 1., pp. 64-68. by Edison T. Liu posted to example future genomics integration medicine personalgenomics review systems by raiyar on 2009-02-07 13:52:05 as along with 4 people jfr guhjy pengchy reyez
	A Bayesian system integrating expression data with sequence patterns for localizing proteins: comprehensive application to the yeast genome [My Copy] Journal of Molecular Biology, Vol. 301, No. 4. (25 August 2000), pp. 1059-1075. by Amar Drawid, Mark Gerstein posted to example integration localization methodspaper parts-list prediction statistics yeast by raiyar on 2008-10-01 13:11:47 as along with 1 person and 1 group lfriedl kdl
	Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. [My Copy] Cell, Vol. 115, No. 5. (26 November 2003), pp. 629-640. by V. K. Mootha, J. Bunkenborg, J. V. Olsen, et al.M. Hjerrild, J. R. Wisniewski, E. Stahl, M. S. Bolouri, H. N. Ray, S. Sihag, M. Kamal, N. Patterson, E. S. Lander, M. Mann posted to disease expression integration methodspaper mitochondria mouse network proteomics regulation by raiyar on 2008-10-01 13:09:33 as
	Integrating protein-protein interactions and text mining for protein function prediction [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 8. (2008) by Samira Jaeger, Sylvain Gaudan, Ulf Leser, Dietrich R. Schuhmann posted to genomics integration interaction methodspaper textmining tool by raiyar on 2008-09-29 16:53:13 as along with 7 people and 1 group Effie farzanehs jiny bootsy reyez phoenixzxl guhjy NaCTeM
	Identification of mitochondrial disease genes through integrative analysis of multiple datasets [My Copy] Methods, Vol. 46, No. 4. (December 2008), pp. 248-255. by Raeka S. Aiyar, Julien Gagneur, Lars M. Steinmetz edited by Gerald Shadel posted to analysis basis disease human integration methodspaper mitochondria network parts-list prediction review statistics systems tac2 by raiyar on 2008-09-22 22:47:52 as
	Capturing cellular machines by systematic screens of protein complexes. [My Copy] Trends Microbiol, Vol. 14, No. 8. (August 2006), pp. 336-339. by J. Gagneur, L. David, L. M. Steinmetz posted to analysis ht integration interaction network proteomics yeast by raiyar on 2008-09-05 13:33:03 as along with 1 person nm
	Combining guilt-by-association and guilt-by-profiling to predict Saccharomyces cerevisiae gene function. [My Copy] Genome biology, Vol. 9 Suppl 1 (2008) by W. Tian, L. V. Zhang, M. Taşan, et al.F. D. Gibbons, O. D. King, J. Park, Z. Wunderlich, J. M. Cherry, F. P. Roth posted to genomics integration methodspaper network prediction tool yeast ym2008 by raiyar on 2008-09-05 13:04:56 as
	An integrated platform of genomic assays reveals small-molecule bioactivities [My Copy] Nat Chem Biol, Vol. 4, No. 8. (2008), pp. 498-506. by Shawn Hoon, Smith, Iain M. Wallace, et al.Sundari Suresh, Molly Miranda, Eula Fung, Michael Proctor, Kevan M. Shokat, Chao Zhang, Ronald W. Davis, Guri Giaever, Robert P. St Onge, Corey Nislow posted to analysis barcode chemgen compound deletion example genomics haploinsufficiency ht integration technique yeast by raiyar on 2008-08-11 16:08:46 as along with 2 people nahnah guhjy
	A Mitochondrial Protein Compendium Elucidates Complex I Disease Biology [My Copy] Cell, Vol. 134, No. 1. (11 July 2008), pp. 112-123. by David J. Pagliarini, Sarah E. Calvo, Betty Chang, et al.Sunil A. Sheth, Scott B. Vafai, Shao-En Ong, Geoffrey A. Walford, Canny Sugiana, Avihu Boneh, William K. Chen, David E. Hill, Marc Vidal, James G. Evans, David R. Thorburn, Steven A. Carr, Vamsi K. Mootha posted to complex db disease genomics human integration methodspaper mitochondria mouse parts-list prediction ym2008 by raiyar on 2008-08-04 21:10:43 as along with 4 people brianb neils ptrobajo mdstobbe
	Integration of HapMap-based SNP pattern analysis and gene expression profiling reveals common SNP profiles for cancer therapy outcome predictor genes. [My Copy] Cell Cycle, Vol. 5, No. 22. (November 2006), pp. 2613-2625. by G. V. Glinsky posted to cancer disease ellstalk expression integration personalgenomics snp variant by raiyar on 2008-07-11 10:05:29 as along with 3 people guhjy jfr macavity1g
	The Elements of Statistical Learning [My Copy] (30 July 2003) by T. Hastie, R. Tibshirani, J. H. Friedman posted to analysis basis integration methodspaper statistics technique by raiyar on 2008-04-21 15:07:47 as along with 60 people and 11 groups fjanoos azhdari emailhy donnachie singhsh abellogin mahmoodr lop idlebrain makrehchi awarlau gabriprat gokopal alexeigor liamtoh333 amsantos minrmw brian eddymier roys akastrin robotact thefillm ansobol pdlug yaroslavvb bigga jelsas davidr gyuli garyfeng aufrank neteler leidner chad_davis jekky balajis Jaykul balicea sdvillal donade bigbossman sbarthelme bedo AbnerCYH nojhan bamberg kgajos deysandeep petrposik dbgrant nmdang alfirk brianmc jung_dalglish dquercia blueskies Repton quianominorleo jaonary LDA and dimension reduction techniques CMU-HCII Blog_and_Wiki_Research automatic_summarization ReadingLab ur-cls ASR EvolutionaryComputation Metaheuristics Optimization CSBBGraphTheory
	A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data [My Copy] Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453. by Ronald Jansen, Haiyuan Yu, Dov Greenbaum, et al.Yuval Kluger, Nevan J. Krogan, Sambath Chung, Andrew Emili, Michael Snyder, Jack F. Greenblatt, Mark Gerstein posted to genomics integration interaction methodspaper prediction by raiyar on 2008-04-11 14:11:32 as along with 22 people and 2 groups cerca hagechouchin443 aelef Robinder lfriedl balajis opheliav yuval wnpx nickluscombe ruvido massivemayhem kdang dbgrant nedwards karfunkel Evangelia shung phoenixzxl penpen926 carlk frohike kdl EBI-regulation
	Comparative assessment of large-scale data sets of protein-protein interactions. [My Copy] Nature, Vol. 417, No. 6887. (23 May 2002), pp. 399-403. by Christian von Mering, Roland Krause, Berend Snel, et al.Michael Cornell, Stephen G. Oliver, Stanley Fields, Peer Bork posted to bioinformatics ht integration interaction methodspaper yeast by raiyar on 2008-02-22 12:21:03 as along with 25 people and 6 groups aceol nzm lawraga semin camster barry dragonrez bicko lfriedl chad_davis alexg j3xucite bundschu yeastyboy ruvido grahamc iris_2001 cmor shu Evangelia shikin Pao-Yang carlk cerca ethkim dbk-lab structural_bioinformatics kdl Bioinformatics generif_paper GeneGo
	STRING 7--recent developments in the integration and prediction of protein interactions. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by C. von Mering, L. J. Jensen, M. Kuhn, et al.S. Chaffron, T. Doerks, B. Krüger, B. Snel, P. Bork posted to integration interaction methodspaper proteomics systems by raiyar on 2008-02-21 19:18:48 as along with 16 people anf dragonrez druvus Cortel wenhui chad_davis guhjy kuhn balajis fisherp massivemayhem larsjuhljensen higueruelo renatomilani carlk bicko
	Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 2. (21 January 2003), pp. 605-610. by V. K. Mootha, P. Lepage, K. Miller, et al.J. Bunkenborg, M. Reich, M. Hjerrild, T. Delmonte, A. Villeneuve, R. Sladek, F. Xu, G. A. Mitchell, C. Morin, M. Mann, T. J. Hudson, B. Robinson, J. D. Rioux, E. S. Lander posted to disease example integration methodspaper mitochondria by raiyar on 2008-02-20 10:20:29 as
	Systematic screens for human disease genes, from yeast to human and back. [My Copy] Mol Biosyst, Vol. 4, No. 1. (January 2008), pp. 18-29. by F. Perocchi, E. Mancera, L. M. Steinmetz posted to disease human integration methodspaper mitochondria rescue review systems yeast by raiyar on 2008-01-18 13:04:11 as along with 1 person guhjy
	MPV17 encodes an inner mitochondrial membrane protein and is mutated in infantile hepatic mitochondrial DNA depletion [My Copy] Nature Genetics, Vol. 38, No. 5. (02 April 2006), pp. 570-575. by Antonella Spinazzola, Carlo Viscomi, Erika Fernandez-Vizarra, et al.Franco Carrara, Pio D'Adamo, Sarah Calvo, René M. Marsano, Claudia Donnini, Hans Weiher, Pietro Strisciuglio, Rossella Parini, Emmanuelle Sarzi, Alicia Chan, Salvatore Dimauro, Agnes Rötig, Paolo Gasparini, Iliana Ferrero, Vamsi K. Mootha, Valeria Tiranti, Massimo Zeviani posted to disease example genetic human im integration methodspaper mitochondria mtdna by raiyar on 2008-01-14 14:25:35 as
	SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data. [My Copy] Bioinformatics, Vol. 23, No. 11. (1 June 2007), pp. 1410-1417. by H. Shatkay, A. Höglund, S. Brady, T. Blum, P. Dönnes, O. Kohlbacher posted to bioinformatics integration localization methodspaper prediction textmining by raiyar on 2008-01-07 22:20:45 as along with 2 people ptrobajo mdstobbe
	POCUS: mining genomic sequence annotation to predict disease genes [My Copy] Genome Biology, Vol. 4, No. 11. (2003) by Frances Turner, Daniel Clutterbuck, Colin Semple posted to analysis bioinformatics disease genetic genomics integration methodspaper by raiyar on 2007-12-19 21:15:38 as along with 1 person daforerog
	Systems biology and new technologies enable predictive and preventative medicine. [My Copy] Science (New York, N.Y.), Vol. 306, No. 5696. (22 October 2004), pp. 640-643. by Leroy Hood, James R. Heath, Michael E. Phelps, Biaoyang Lin posted to disease ellstalk integration methodspaper model personalgenomics review systems by raiyar on 2007-12-18 01:46:34 as along with 9 people and 1 group schmidtm daforerog Scis0000002 wnpx cconboy maburkitt shikin AlexanderPico megraw GeneGo
	Disease gene discovery through integrative genomics. [My Copy] Annu Rev Genomics Hum Genet, Vol. 6 (2005), pp. 381-406. by C. Giallourakis, C. Henson, M. Reich, X. Xie, V. K. Mootha posted to complex_trait disease genetic genomics integration mendelian methodspaper network by raiyar on 2007-11-16 13:10:04 as along with 2 people daforerog jo_davies
	Maximizing the potential of functional genomics. [My Copy] Nat Rev Genet, Vol. 5, No. 3. (March 2004), pp. 190-201. by L. M. Steinmetz, R. W. Davis posted to bioinformatics genomics integration methodspaper review by raiyar on 2007-09-12 21:26:03 as along with 1 group steinmetzlab
	The human disease network [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 21. (22 May 2007), pp. 8685-8690. by Kwang-Il Goh, Michael E. Cusick, David Valle, Barton Childs, Marc Vidal, Albert-LÃ¡szlÃ³ BarabÃ¡si posted to analysis bioinformatics disease genomics integration methodspaper network statistics systems by raiyar on 2007-05-27 00:38:43 as along with 39 people and 9 groups robfsouza bertelsen smichan biomcgary pawelsobko CurAbility Scis0000002 qluo cbforrest daforerog nedwards Dulcinea saket kaarsinogen roys Yanno guhjy aalibes cannin kuhn jfr yas balicea neveaire bundschu grahamc joepickrell leSyl henning dejori xingxu winterschlaefer naegele shoshin shikin nolodie mingzhi carlk yaredo Network Analysis of Genes Regulated in Renal Diseases Biostatistics Computational-Genomics Bioinformatics Neuroscience steinmetzlab ic4 generif_paper GomezLab
	Integrated Genomic and Proteomic Analyses of a Systematically Perturbed Metabolic Network [My Copy] Science, Vol. 292, No. 5518. (4 May 2001), pp. 929-934. by Trey Ideker, Vesteinn Thorsson, Jeffrey A. Ranish, et al.Rowan Christmas, Jeremy Buhler, Jimmy K. Eng, Roger Bumgarner, David R. Goodlett, Ruedi Aebersold, Leroy Hood posted to analysis array bioinformatics deletion expression genomics integration methodspaper model network proteomics systems yeast by raiyar on 2007-05-26 18:25:14 as along with 14 people and 3 groups pmendes myzhang rsaito isimpson snuppepuppan BioGeek dragonrez bpb okarsligil opheliav wnpx gurkanbebek thomaskelder shikin Bioinformatics steinmetzlab GeneGo
	High-throughput classification of yeast mutants for functional genomics using metabolic footprinting. [My Copy] Nat Biotechnol, Vol. 21, No. 6. (June 2003), pp. 692-696. by J. Allen, H. M. Davey, D. Broadhurst, et al.J. K. Heald, J. J. Rowland, S. G. Oliver, D. B. Kell posted to analysis bioinformatics defect deletion expression genomics integration metabolic_profiling systems yeast by raiyar on 2007-05-18 16:06:54 as along with 4 people and 3 groups peterli dbk irenas katerinakal streptomyces dbk-lab steinmetzlab
	A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations. [My Copy] Nature biotechnology, Vol. 19, No. 1. (January 2001), pp. 45-50. by L. M. Raamsdonk, B. Teusink, D. Broadhurst, et al.N. Zhang, A. Hayes, M. C. Walsh, J. A. Berden, K. M. Brindle, D. B. Kell, J. J. Rowland, H. V. Westerhoff, K. van Dam, S. G. Oliver posted to analysis bioinformatics defect deletion ht integration metabolic_profiling yeast by raiyar on 2007-05-18 16:05:35 as along with 8 people and 3 groups michaelbarton Garth_9145 czeller dbk irenas dullhunk katerinakal JeremyZucker streptomyces dbk-lab steinmetzlab
	The need for standards, not guidelines, in biological data reporting and sharing. [My Copy] Nature biotechnology, Vol. 24, No. 11. (November 2006), pp. 1369-1373. by Lyle D. Burgoon posted to bioinformatics integration interest review by raiyar on 2007-04-27 11:15:24 as along with 4 people and 1 group daforerog smichan mhucka jfr steinmetzlab
	Towards multidimensional genome annotation [My Copy] Nature Reviews Genetics, Vol. 7, No. 2. (February 2006), pp. 130-141. by Jennifer L. Reed, Iman Famili, Ines Thiele, Bernhard O. Palsson posted to genomics integration interest methodspaper by raiyar on 2007-02-21 13:05:45 as along with 13 people and 4 groups mycomodel tobitas druvus guhjy jfr balajis eweaver dchughes cmm massivemayhem wenhan zwang lylu FAB-lab G4ID steinmetzlab Genetics-of-Gambling
	Metabolic modeling of microbial strains in silico. [My Copy] Trends Biochem Sci, Vol. 26, No. 3. (March 2001), pp. 179-186. by M. W. Covert, C. H. Schilling, I. Famili, et al.J. S. Edwards, I. I. Goryanin, E. Selkov, B. O. Palsson posted to systems review network model metabolic integration flux bioinformatics by raiyar on 2007-01-24 17:05:10 as along with 2 people and 2 groups peterli icases steinmetzlab TNT
	Integrative analysis of the mitochondrial proteome in yeast. [My Copy] PLoS Biol, Vol. 2, No. 6. (June 2004) by H. Prokisch, C. Scharfe, D. G. Camp, et al.W. Xiao, L. David, C. Andreoli, M. E. Monroe, R. J. Moore, M. A. Gritsenko, C. Kozany, K. K. Hixson, H. M. Mottaz, H. Zischka, M. Ueffing, Z. S. Herman, R. W. Davis, T. Meitinger, P. J. Oefner, R. D. Smith, L. M. Steinmetz posted to array deletion expression genomics integration methodspaper mitochondria ms parts-list sgtcnih yeast by raiyar on 2007-01-19 13:27:17 as along with 1 group steinmetzlab
	Re-analysis of data and its integration [My Copy] FEBS Letters, Vol. 579, No. 8. (21 March 2005), pp. 1802-1807. by Lars J. Jensen, Lars M. Steinmetz posted to analysis deletion expression genomics integration methodspaper review yeast by raiyar on 2007-01-15 14:17:58 as along with 5 people and 1 group guhjy monocyte pcahan1 Carlton larsjuhljensen steinmetzlab
	Systematic identification of human mitochondrial disease genes through integrative genomics [My Copy] Nat Genet, Vol. 38, No. 5. (02 April 2006), pp. 576-582. by Sarah Calvo, Mohit Jain, Xiaohui Xie, et al.Sunil A. Sheth, Betty Chang, Olga A. Goldberger, Antonella Spinazzola, Massimo Zeviani, Steven A. Carr, Vamsi K. Mootha posted to disease genes genomics human integration methodspaper mitochondria systems by raiyar on 2007-01-09 21:56:49 as along with 6 people and 2 groups avilella kentsis balicea nirfriedman ptrobajo mdstobbe Ensembl Compara citations steinmetzlab
	Assessing Systems Properties of Yeast Mitochondria through an Interaction Map of the Organelle [My Copy] PLoS Genetics, Vol. 2, No. 10. (20 October 2006), e170. by Fabiana Perocchi, Lars J. Jensen, Julien Gagneur, et al.Uwe Ahting, Christian von Mering, Peer Bork, Holger Prokisch, Lars M. Steinmetz edited by Stuart K. Kim posted to disease genes human integration interaction methodspaper mitochondria network parts-list sgtcnih systems tac2 yeast by raiyar on 2006-12-28 02:04:28 as along with 1 group steinmetzlab

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mitochondria	161
methodspaper	121
yeast	115
review	90
disease	81
genomics	68
human	54
mtdna	49
network	48
projmt	47
analysis	43
bioinformatics	43
systems	40
genetic	39
prediction	39
basis	38
mutant	38
ht	37
technique	35
integration	34
model	32
localization	31
mitotarget	29
parts-list	28
example	26
interaction	25
proteomics	25
regulation	24
respiration	24
deletion	22
expression	22
metabolic	22
sgtcnih	20
compound	19
interest	19
qtl	19
tool	16
transcription	16
allotopic	15
statistics	14
array	13
atp6	13
goodref	13
litrev	13
personalgenomics	13
complex_trait	12
defect	12
evolution	12
projnarp	12
ros	12
db	11
projmicr	11
ellstalk	10
morphology	10
chemgen	9
mouse	9
drosophila	8
flux	8
metabolic_profiling	8
narp	8
variant	8
genes	7
im	7
mtknockout	7
rescue	7
target	7
aging	6
chlamydomonas	6
medicine	6
tac2	6
atp8	5
barcode	5
cancer	5
ms	5
textmining	5
complex	4
mendelian	4
pharmacogen	4
population	4
ym2008	4
cox2	3
cox3	3
dhla	3
future	3
haploinsufficiency	3
methodspaper2	3
microscopy	3
petite	3
rflp	3
rnai	3
snp	3
therapeutic	3
tiling	3
ts	3
atp9	2
c7	2
condition	2
diauxic	2
hap1	2
phenotype	2
recombinant	2
rha	2
tacqa	2
tap	2
apoptosis	1
berlin	1
clinical	1
cob	1
development	1
diagnosis	1
electom	1
fg2008	1
learning	1
motif	1
pathway	1
quantitative	1
rec	1
recombination	1
resource	1
sl	1
tf	1
toxin	1
translation	1
vector	1
yjm789	1

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