raiyar's model [32 articles] Export

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	The Sod2 mutant mouse as a model for oxidative stress: A functional proteomics perspective. [My Copy] Mass spectrometry reviews (17 March 2009) by Yie Hou H. Lee, Qingsong Lin, Urs A A. Boelsterli, Maxey C M C. Chung posted to deletion goodref model mouse mutant proteomics ros by raiyar on 2009-06-03 12:49:34 as
	Generation of transmitochondrial mice: development of xenomitochondrial mice to model neurodegenerative diseases. [My Copy] Methods in cell biology, Vol. 80 (2007), pp. 549-569. by C. A. Pinkert, I. A. Trounce posted to disease goodref mitochondria model mouse mtdna technique by raiyar on 2009-06-03 12:49:02 as
	Structure and function of a transcriptional network activated by the MAPK Hog1. [My Copy] Nature genetics (19 October 2008) by Andrew P P. Capaldi, Tommy Kaplan, Ying Liu, et al.Naomi Habib, Aviv Regev, Nir Friedman, Erin K K. O'Shea posted to analysis example model network projmt regulation yeast by raiyar on 2008-11-03 16:54:00 as along with 4 people roys jbhiatt renatomilani tmmurali
	Yeast as a model for human disease. [My Copy] Current protocols in human genetics / editorial board, Jonathan L. Haines ... [et al.], Vol. Chapter 15 (February 2006) by M. G. Smith, M. Snyder posted to disease genomics methodspaper model review yeast by raiyar on 2008-09-05 12:57:50 as
	Variations in DNA elucidate molecular networks that cause disease. [My Copy] Nature, Vol. 452, No. 7186. (27 March 2008), pp. 429-435. by Yanqing Chen, Jun Zhu, Pek Yee Y. Lum, et al.Xia Yang, Shirly Pinto, Douglas J. MacNeil, Chunsheng Zhang, John Lamb, Stephen Edwards, Solveig K. Sieberts, Amy Leonardson, Lawrence W. Castellini, Susanna Wang, Marie-France F. Champy, Bin Zhang, Valur Emilsson, Sudheer Doss, Anatole Ghazalpour, Steve Horvath, Thomas A. Drake, Aldons J. Lusis, Eric E. Schadt posted to disease expression genetic human methodspaper model network qtl systems by raiyar on 2008-04-15 13:10:34 as along with 22 people and 2 groups mnishimu Zephyrus biomcgary daforerog roys druvus nicklynch semrich brianb jbsaltz djkt lp2 jo_davies shikin caseybrown ptrobajo guhjy echinotrix natstreet sanchezbuelna jfr chrisamiller 4th_floor_JC GeneGo
	A predictive model for transcriptional control of physiology in a free living cell. [My Copy] Cell, Vol. 131, No. 7. (28 December 2007), pp. 1354-1365. by Richard Bonneau, Marc T. Facciotti, David J. Reiss, et al.Amy K. Schmid, Min Pan, Amardeep Kaur, Vesteinn Thorsson, Paul Shannon, Michael H. Johnson, J. Christopher Bare, William Longabaugh, Madhavi Vuthoori, Kenia Whitehead, Aviv Madar, Lena Suzuki, Tetsuya Mori, Dong-Eun E. Chang, Jocelyne Diruggiero, Carl H. Johnson, Leroy Hood, Nitin S. Baliga posted to methodspaper model network prediction by raiyar on 2008-04-11 17:03:14 as along with 11 people ptrobajo adampah lawraga edwardmorrissey guhjy tmmurali oelemento emptyhb megraw roys Borelli
	A yeast model of the neurogenic ataxia retinitis pigmentosa (NARP) T8993G mutation in the mitochondrial ATP synthase-6 gene. [My Copy] J Biol Chem, Vol. 282, No. 47. (23 November 2007), pp. 34039-34047. by M. Rak, E. Tetaud, S. Duvezin-Caubet, et al.N. Ezkurdia, M. Bietenhader, J. Rytka, J. P. di Rago posted to atp6 disease mitochondria model mtdna mutant narp projmt sgtcnih tac2 yeast by raiyar on 2008-03-19 15:14:06 as
	Broad network-based predictability of Saccharomyces cerevisiae gene loss-of-function phenotypes. [My Copy] Genome biology, Vol. 8, No. 12. (2007) by Kriston L. McGary, Insuk Lee, Edward M. Marcotte posted to bioinformatics complex_trait disease genomics methodspaper model mutant network prediction yeast by raiyar on 2008-02-18 11:01:55 as along with 6 people benjaminsb jiny cjeans biomcgary barriot entropy
	Gene network inference via structural equation modeling in genetical genomics experiments. [My Copy] Genetics, Vol. 178, No. 3. (3 March 2008), pp. 1763-1776. by B. Liu, A. de la Fuente, I. Hoeschele posted to bioinformatics expression model network qtl regulation statistics yeast by raiyar on 2008-02-06 11:39:14 as along with 8 people and 1 group roys Scis0000002 orzenil dpollard xingxu caseybrown smgomez guhjy EisenLab
	Yeast models of human mitochondrial diseases. [My Copy] IUBMB Life, Vol. 55, No. 2. (February 2003), pp. 83-95. by A. Barrientos posted to yeast systems review projnarp projmt mutant model mitochondria methodspaper human disease defect by raiyar on 2008-01-21 11:05:32 as
	Yeast models of human mitochondrial diseases: from molecular mechanisms to drug screening. [My Copy] Biotechnol J, Vol. 1, No. 3. (March 2006), pp. 270-281. by C. Schwimmer, M. Rak, L. Lefebvre-Legendre, S. Duvezin-Caubet, G. Plane, J. P. di Rago posted to compound disease methodspaper mitochondria model narp projmt review sgtcnih by raiyar on 2008-01-21 10:33:47 as
	Systems biology and new technologies enable predictive and preventative medicine. [My Copy] Science (New York, N.Y.), Vol. 306, No. 5696. (22 October 2004), pp. 640-643. by Leroy Hood, James R. Heath, Michael E. Phelps, Biaoyang Lin posted to disease ellstalk integration methodspaper model personalgenomics review systems by raiyar on 2007-12-18 01:46:34 as along with 9 people and 1 group schmidtm daforerog Scis0000002 wnpx cconboy maburkitt shikin AlexanderPico megraw GeneGo
	Evaluation of predicted network modules in yeast metabolism using NMR-based metabolite profiling. [My Copy] Genome Res, Vol. 17, No. 4. (April 2007), pp. 510-519. by J. G. Bundy, B. Papp, R. Harmston, et al.R. A. Browne, E. M. Clayson, N. Burton, R. J. Reece, S. G. Oliver, K. M. Brindle posted to bioinformatics deletion metabolic_profiling methodspaper model network prediction technique yeast by raiyar on 2007-06-08 09:33:01 as along with 2 people and 1 group fishtank alexg steinmetzlab
	Integrated Genomic and Proteomic Analyses of a Systematically Perturbed Metabolic Network [My Copy] Science, Vol. 292, No. 5518. (4 May 2001), pp. 929-934. by Trey Ideker, Vesteinn Thorsson, Jeffrey A. Ranish, et al.Rowan Christmas, Jeremy Buhler, Jimmy K. Eng, Roger Bumgarner, David R. Goodlett, Ruedi Aebersold, Leroy Hood posted to analysis array bioinformatics deletion expression genomics integration methodspaper model network proteomics systems yeast by raiyar on 2007-05-26 18:25:14 as along with 14 people and 3 groups pmendes myzhang rsaito isimpson snuppepuppan BioGeek dragonrez bpb okarsligil opheliav wnpx gurkanbebek thomaskelder shikin Bioinformatics steinmetzlab GeneGo
	Multiscale Modeling of Cardiac Cellular Energetics [My Copy] Ann NY Acad Sci, Vol. 1047, No. 1. (1 June 2005), pp. 395-426. by James B. Bassingthwaighte, Howard J. Chizeck, Les E. Atlas, Hong Qian posted to bioinformatics mitochondria model respiration by raiyar on 2007-05-13 13:59:08 as along with 1 group steinmetzlab
	Systems biology, metabolic modelling and metabolomics in drug discovery and development. [My Copy] Drug discovery today, Vol. 11, No. 23-24. (December 2006), pp. 1085-1092. by Douglas B. Kell posted to genomics metabolic metabolic_profiling methodspaper model network prediction review systems by raiyar on 2007-05-02 12:44:16 as along with 13 people and 2 groups peterli flbarroso schwartzjmc egonw irenas nicklynch alexg dullhunk mhucka fishtank shikin alanrw gemmalholliday steinmetzlab GeneGo
	Systems Biology Toolbox for MATLAB: a computational platform for research in systems biology [My Copy] Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 514-515. by Henning Schmidt, Mats Jirstrand posted to bioinformatics model network systems technique by raiyar on 2007-04-26 09:40:20 as along with 3 people and 2 groups joseph_x_zhou julius jrbanga SysbioMPI-TCells steinmetzlab
	Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data [My Copy] Theoretical Biology and Medical Modelling, Vol. 3 (15 December 2006), 42. by Wolfram Liebermeister, Edda Klipp posted to bioinformatics flux metabolic methodspaper model network prediction statistics systems technique by raiyar on 2007-04-23 16:54:29 as along with 5 people and 1 group lflorez guhjy wnpx fishtank jrbanga steinmetzlab
	Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments. [My Copy] Briefings in bioinformatics, Vol. 7, No. 4. (1 December 2006), pp. 364-374. by Natal A. van Riel posted to bioinformatics metabolic model network prediction review systems technique by raiyar on 2007-04-23 15:48:44 as along with 4 people and 1 group bertelsen abhishek_tiwari wnpx fishtank steinmetzlab
	Multiple knockout analysis of genetic robustness in the yeast metabolic network [My Copy] Nature Genetics, Vol. 38, No. 9. (29 August 2006), pp. 993-998. by David Deutscher, Isaac Meilijson, Martin Kupiec, Eytan Ruppin posted to metabolic model mutant network yeast by raiyar on 2007-04-03 16:35:12 as along with 9 people and 1 group shung nzm tmmurali koller cjeans patrycja_missiuro edwardmorrissey hryk jiny steinmetzlab
	Meet the human metabolome [My Copy] Nature, Vol. 446, No. 7131. (1 March 2007), pp. 8-8. by Helen Pearson posted to human metabolic model by raiyar on 2007-03-31 21:39:44 as along with 3 people and 1 group mingzhi katerinakal guhjy steinmetzlab
	Uncovering transcriptional regulation of metabolism by using metabolic network topology [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 8. (22 February 2005), pp. 2685-2689. by Kiran R. Patil, Jens Nielsen posted to bioinformatics metabolic model network regulation transcription by raiyar on 2007-03-22 12:52:55 as along with 2 people and 1 group kukki alexg steinmetzlab
	Isotopomer analysis of myocardial substrate metabolism: a systems biology approach. [My Copy] Biotechnol Bioeng, Vol. 95, No. 5. (5 December 2006), pp. 972-983. by T. D. Vo, B. O. Palsson posted to bioinformatics metabolic mitochondria model respiration systems by raiyar on 2007-03-21 13:06:49 as along with 1 group steinmetzlab
	Systems analysis of energy metabolism elucidates the affected respiratory chain complex in Leigh's syndrome [My Copy] Molecular Genetics and Metabolism, Vol. 91, No. 1. (May 2007), pp. 15-22. by Thuy D. Vo, Paul, Bernhard O. Palsson posted to bioinformatics disease metabolic methodspaper model network systems by raiyar on 2007-03-21 12:53:19 as along with 1 group steinmetzlab
	Global reconstruction of the human metabolic network based on genomic and bibliomic data. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 6. (6 February 2007), pp. 1777-1782. by N. C. Duarte, S. A. Becker, N. Jamshidi, et al.I. Thiele, M. L. Mo, T. D. Vo, R. Srivas, B. Ø. Palsson posted to flux genomics human metabolic metabolic_profiling methodspaper mitochondria model systems by raiyar on 2007-02-06 08:42:32 as along with 9 people and 1 group vpenelle peterli schwartzjmc michaelbarton dullhunk guhjy balajis alexg noby steinmetzlab
	Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions [My Copy] BMC Bioinformatics, Vol. 1, No. 1. (2000), pp. 1-1. by Jeremy S. Edwards, Bernhard O. Palsson posted to parts-list network mutant model genes flux deletion bioinformatics analysis by raiyar on 2007-01-25 11:29:42 as along with 2 people and 2 groups winterstream icases steinmetzlab TNT
	Integrating high-throughput and computational data elucidates bacterial networks. [My Copy] Nature, Vol. 429, No. 6987. (6 May 2004), pp. 92-96. by M. W. Covert, E. M. Knight, J. L. Reed, M. J. Herrgard, B. O. Palsson posted to ht model network regulation sgtcnih systems by raiyar on 2007-01-25 10:42:56 as along with 6 people and 2 groups Retchless lfriedl RMGraze alexg JeremyZucker srp33 kdl steinmetzlab
	Metabolic modeling of microbial strains in silico. [My Copy] Trends Biochem Sci, Vol. 26, No. 3. (March 2001), pp. 179-186. by M. W. Covert, C. H. Schilling, I. Famili, et al.J. S. Edwards, I. I. Goryanin, E. Selkov, B. O. Palsson posted to systems review network model metabolic integration flux bioinformatics by raiyar on 2007-01-24 17:05:10 as along with 2 people and 2 groups peterli icases steinmetzlab TNT
	Candidate metabolic network states in human mitochondria. Impact of diabetes, ischemia, and diet. [My Copy] J Biol Chem, Vol. 280, No. 12. (25 March 2005), pp. 11683-11695. by I. Thiele, N. D. Price, T. D. Vo, B. Ø. Palsson posted to network model mitochondria metabolic human flux disease by raiyar on 2007-01-24 17:00:01 as along with 1 group steinmetzlab
	MitoP2: the mitochondrial proteome database--now including mouse data. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by H. Prokisch, C. Andreoli, U. Ahting, et al.K. Heiss, A. Ruepp, C. Scharfe, T. Meitinger posted to human methodspaper mitochondria model parts-list sgtcnih yeast by raiyar on 2007-01-22 12:31:36 as along with 1 group steinmetzlab
	Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae. [My Copy] Genome Res, Vol. 16, No. 5. (May 2006), pp. 627-635. by M. J. Herrgård, B. S. Lee, V. Portnoy, B. Ø. Palsson posted to metabolic methodspaper model network regulation sgtcnih transcription yeast by raiyar on 2007-01-08 15:19:42 as along with 8 people and 3 groups michaelbarton JeremyZucker nickluscombe aswin kengg koller cjeans edwardmorrissey EBI-regulation steinmetzlab Plantandetc
	Systems biology of SNPs [My Copy] Mol Syst Biol, Vol. 2 (4 July 2006), pp. E1-E4. by Neema Jamshidi, Bernhard O. Palsson posted to human metabolic methodspaper mitochondria model snp systems by raiyar on 2007-01-08 15:09:35 as along with 7 people and 5 groups Sonix dchughes massivemayhem cat_worth dbgrant jo_davies michaelbarton structural_bioinformatics G4ID steinmetzlab Genetics-of-Gambling BergmanLab

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mitochondria	161
methodspaper	121
yeast	115
review	90
disease	81
genomics	68
human	54
mtdna	49
network	48
projmt	47
analysis	43
bioinformatics	43
systems	40
genetic	39
prediction	39
basis	38
mutant	38
ht	37
technique	35
integration	34
model	32
localization	31
mitotarget	29
parts-list	28
example	26
interaction	25
proteomics	25
regulation	24
respiration	24
deletion	22
expression	22
metabolic	22
sgtcnih	20
compound	19
interest	19
qtl	19
tool	16
transcription	16
allotopic	15
statistics	14
array	13
atp6	13
goodref	13
litrev	13
personalgenomics	13
complex_trait	12
defect	12
evolution	12
projnarp	12
ros	12
db	11
projmicr	11
ellstalk	10
morphology	10
chemgen	9
mouse	9
drosophila	8
flux	8
metabolic_profiling	8
narp	8
variant	8
genes	7
im	7
mtknockout	7
rescue	7
target	7
aging	6
chlamydomonas	6
medicine	6
tac2	6
atp8	5
barcode	5
cancer	5
ms	5
textmining	5
complex	4
mendelian	4
pharmacogen	4
population	4
ym2008	4
cox2	3
cox3	3
dhla	3
future	3
haploinsufficiency	3
methodspaper2	3
microscopy	3
petite	3
rflp	3
rnai	3
snp	3
therapeutic	3
tiling	3
ts	3
atp9	2
c7	2
condition	2
diauxic	2
hap1	2
phenotype	2
recombinant	2
rha	2
tacqa	2
tap	2
apoptosis	1
berlin	1
clinical	1
cob	1
development	1
diagnosis	1
electom	1
fg2008	1
learning	1
motif	1
pathway	1
quantitative	1
rec	1
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toxin	1
translation	1
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