raiyar's prediction [39 articles] Export

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	Mapping Gene Associations in Human Mitochondria using Clinical Disease Phenotypes [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (24 April 2009), e1000374. by Curt Scharfe, Henry H. Lu, Jutta K. Neuenburg, et al.Edward A. Allen, Guan-Cheng Li, Thomas Klopstock, Tina M. Cowan, Gregory M. Enns, Ronald W. Davis posted to disease interaction mitochondria network phenotype prediction by raiyar on 2009-06-03 13:13:34 as along with 2 people ptrobajo guhjy
	Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis. [My Copy] PLoS genetics, Vol. 5, No. 3. (20 March 2009), e1000407. by David C. Hess, Chad L. Myers, Curtis Huttenhower, et al.Matthew A. Hibbs, Alicia P. Hayes, Jadine Paw, John J. Clore, Rosa M. Mendoza, Bryan S. Luis, Corey Nislow, Guri Giaever, Michael Costanzo, Olga G. Troyanskaya, Amy A. Caudy posted to analysis integration litrev mitochondria morphology parts-list prediction ym2008 by raiyar on 2009-05-29 14:48:17 as along with 1 person tmmurali
	A Bayesian system integrating expression data with sequence patterns for localizing proteins: comprehensive application to the yeast genome [My Copy] Journal of Molecular Biology, Vol. 301, No. 4. (25 August 2000), pp. 1059-1075. by Amar Drawid, Mark Gerstein posted to example integration localization methodspaper parts-list prediction statistics yeast by raiyar on 2008-10-01 13:11:47 as along with 1 person and 1 group lfriedl kdl
	Improved prediction of signal peptides: SignalP 3.0. [My Copy] Journal of molecular biology, Vol. 340, No. 4. (16 July 2004), pp. 783-795. by Jannick Dyrløv D. Bendtsen, Henrik Nielsen, Gunnar von Heijne, Søren Brunak posted to localization methodspaper mitotarget prediction tool by raiyar on 2008-09-29 15:37:50 as along with 10 people BioNica azazello tfuji rpetrenko katholt nedwards kreibich niallhaslam richter80 sebk
	Adaptation of protein surfaces to subcellular location. [My Copy] Journal of molecular biology, Vol. 276, No. 2. (20 February 1998), pp. 517-525. by M. A. Andrade, S. I. O'Donoghue, B. Rost posted to localization methodspaper mitotarget prediction proteomics target by raiyar on 2008-09-29 15:24:31 as
	pTARGET [corrected] a new method for predicting protein subcellular localization in eukaryotes. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 21. (1 November 2005), pp. 3963-3969. by C. Guda, S. Subramaniam posted to localization methodspaper mitotarget prediction tool by raiyar on 2008-09-29 15:15:05 as
	Support vector machine approach for protein subcellular localization prediction. [My Copy] Bioinformatics (Oxford, England), Vol. 17, No. 8. (August 2001), pp. 721-728. by S. Hua, Z. Sun posted to localization methodspaper mitotarget parts-list prediction by raiyar on 2008-09-29 14:44:30 as
	AMPDB: the Arabidopsis Mitochondrial Protein Database. [My Copy] Nucleic acids research, Vol. 33, No. Database issue. (1 January 2005) by J. L. Heazlewood, A. H. Millar posted to db methodspaper mitochondria mitotarget parts-list prediction tool by raiyar on 2008-09-29 14:24:16 as
	Locating proteins in the cell using TargetP, SignalP and related tools. [My Copy] Nature protocols, Vol. 2, No. 4. (2007), pp. 953-971. by Olof Emanuelsson, Søren Brunak, Gunnar von Heijne, Henrik Nielsen posted to localization methodspaper mitotarget prediction review tool by raiyar on 2008-09-29 13:17:37 as along with 6 people azazello dandaman nlapalu guhjy ptrobajo mdstobbe
	Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. [My Copy] J Mol Biol, Vol. 300, No. 4. (21 July 2000), pp. 1005-1016. by O. Emanuelsson, H. Nielsen, S. Brunak, G. von Heijne posted to localization methodspaper mitotarget prediction target tool by raiyar on 2008-09-29 13:16:43 as along with 4 people and 2 groups nlapalu bpcusack ana mloewer structural_bioinformatics Bioinformatics
	Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. [My Copy] Plant Cell, Vol. 16, No. 1. (January 2004), pp. 241-256. by J. L. Heazlewood, J. S. Tonti-Filippini, A. M. Gout, D. A. Day, J. Whelan, A. H. Millar posted to localization methodspaper mitochondria mitotarget parts-list prediction proteomics target by raiyar on 2008-09-29 13:05:41 as along with 1 person dandaman
	Identification of mitochondrial disease genes through integrative analysis of multiple datasets [My Copy] Methods, Vol. 46, No. 4. (December 2008), pp. 248-255. by Raeka S. Aiyar, Julien Gagneur, Lars M. Steinmetz edited by Gerald Shadel posted to analysis basis disease human integration methodspaper mitochondria network parts-list prediction review statistics systems tac2 by raiyar on 2008-09-22 22:47:52 as
	Combining guilt-by-association and guilt-by-profiling to predict Saccharomyces cerevisiae gene function. [My Copy] Genome biology, Vol. 9 Suppl 1 (2008) by W. Tian, L. V. Zhang, M. Taşan, et al.F. D. Gibbons, O. D. King, J. Park, Z. Wunderlich, J. M. Cherry, F. P. Roth posted to genomics integration methodspaper network prediction tool yeast ym2008 by raiyar on 2008-09-05 13:04:56 as
	Drug Target Identification Using Side-Effect Similarity [My Copy] Science, Vol. 321, No. 5886. (11 July 2008), pp. 263-266. by Monica Campillos, Michael Kuhn, Anne-Claude Gavin, Lars J. Jensen, Peer Bork posted to analysis chemgen compound example genomics ht interaction network prediction target by raiyar on 2008-08-11 16:21:27 as along with 17 people anthropomorphism npt11tpn mitko mingzhi TRHvidsten dullhunk jfr zimbo1 bpcusack jmuhlich aheilbut larsjuhljensen tmmurali askrajiv reyez roys ajaymalik
	A Mitochondrial Protein Compendium Elucidates Complex I Disease Biology [My Copy] Cell, Vol. 134, No. 1. (11 July 2008), pp. 112-123. by David J. Pagliarini, Sarah E. Calvo, Betty Chang, et al.Sunil A. Sheth, Scott B. Vafai, Shao-En Ong, Geoffrey A. Walford, Canny Sugiana, Avihu Boneh, William K. Chen, David E. Hill, Marc Vidal, James G. Evans, David R. Thorburn, Steven A. Carr, Vamsi K. Mootha posted to complex db disease genomics human integration methodspaper mitochondria mouse parts-list prediction ym2008 by raiyar on 2008-08-04 21:10:43 as along with 4 people brianb neils ptrobajo mdstobbe
	Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. [My Copy] Science (New York, N.Y.), Vol. 286, No. 5439. (15 October 1999), pp. 531-537. by T. R. Golub, D. K. Slonim, P. Tamayo, et al.C. Huard, M. Gaasenbeek, J. P. Mesirov, H. Coller, M. L. Loh, J. R. Downing, M. A. Caligiuri, C. D. Bloomfield, E. S. Lander posted to analysis basis cancer disease ellstalk expression personalgenomics prediction by raiyar on 2008-07-10 23:05:57 as along with 20 people and 2 groups isimpson srp33 ipark-kaist kentz esyoun stharward gstiglic ctaraujo ihpark winterschlaefer hhhhssss balajis sdvillal archroad giovanni santhosh ugengma jo_davies akastrin zchen Network Analysis of Genes Regulated in Renal Diseases GeschwindLab
	Walking the interactome for prioritization of candidate disease genes. [My Copy] American journal of human genetics, Vol. 82, No. 4. (April 2008), pp. 949-958. by Sebastian Köhler, Sebastian Bauer, Denise Horn, Peter N. Robinson posted to disease genetic interaction methodspaper network prediction by raiyar on 2008-06-23 15:12:21 as along with 6 people daforerog saket jfr kluck daed guhjy
	Protein networks in disease. [My Copy] Genome research, Vol. 18, No. 4. (1 April 2008), pp. 644-652. by Trey Ideker, Roded Sharan posted to disease ellstalk methodspaper network personalgenomics prediction proteomics by raiyar on 2008-06-19 15:46:55 as along with 27 people shikin carlk isimpson chica saket zufar kaarsinogen giovenko guhjy balicea tmmurali Borelli jwdietrich frohike bootsy nedwards roys mclarenv phoenixzxl brianb schuylrp jfr paolomarcatili gracio thomaskelder ptrobajo zwang
	Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi. [My Copy] Nature, Vol. 414, No. 6862. (22 November 2001), pp. 450-453. by M. D. Katinka, S. Duprat, E. Cornillot, et al.G. Méténier, F. Thomarat, G. Prensier, V. Barbe, E. Peyretaillade, P. Brottier, P. Wincker, F. Delbac, H. El Alaoui, P. Peyret, W. Saurin, M. Gouy, J. Weissenbach, C. P. Vivarès posted to evolution genomics methodspaper mitochondria parts-list prediction by raiyar on 2008-04-25 15:19:22 as along with 1 person alexl
	A predictive model for transcriptional control of physiology in a free living cell. [My Copy] Cell, Vol. 131, No. 7. (28 December 2007), pp. 1354-1365. by Richard Bonneau, Marc T. Facciotti, David J. Reiss, et al.Amy K. Schmid, Min Pan, Amardeep Kaur, Vesteinn Thorsson, Paul Shannon, Michael H. Johnson, J. Christopher Bare, William Longabaugh, Madhavi Vuthoori, Kenia Whitehead, Aviv Madar, Lena Suzuki, Tetsuya Mori, Dong-Eun E. Chang, Jocelyne Diruggiero, Carl H. Johnson, Leroy Hood, Nitin S. Baliga posted to methodspaper model network prediction by raiyar on 2008-04-11 17:03:14 as along with 11 people ptrobajo adampah lawraga edwardmorrissey guhjy tmmurali oelemento emptyhb megraw roys Borelli
	A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data [My Copy] Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453. by Ronald Jansen, Haiyuan Yu, Dov Greenbaum, et al.Yuval Kluger, Nevan J. Krogan, Sambath Chung, Andrew Emili, Michael Snyder, Jack F. Greenblatt, Mark Gerstein posted to genomics integration interaction methodspaper prediction by raiyar on 2008-04-11 14:11:32 as along with 22 people and 2 groups cerca hagechouchin443 aelef Robinder lfriedl balajis opheliav yuval wnpx nickluscombe ruvido massivemayhem kdang dbgrant nedwards karfunkel Evangelia shung phoenixzxl penpen926 carlk frohike kdl EBI-regulation
	KEGG for linking genomes to life and the environment [My Copy] Nucl. Acids Res., Vol. 36, No. suppl_1. (11 January 2008), pp. D480-484. by Minoru Kanehisa, Michihiro Araki, Susumu Goto, et al.Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi posted to bioinformatics db genomics interaction metabolic methodspaper prediction systems tool by raiyar on 2008-04-11 13:29:06 as along with 31 people ajsferreira Thaverkamp sjcockell JeremyZucker jperkins vkwn pablocarb VGreiff mqbphcw3 karinlag robert85 peterli jjray schwartzjmc ubcg08l allysonlister YukaH Cortel coela daforerog reyez namunet irenas guhjy barriot renatomilani shung hpaces massivemayhem natstreet TheresaNiederberger
	Computational prediction of subcellular localization. [My Copy] Methods Mol Biol, Vol. 390 (2007), pp. 429-466. by K. Nakai, P. Horton posted to bioinformatics localization methodspaper mitochondria prediction by raiyar on 2008-02-22 12:47:55 as
	MitoProt, a Macintosh application for studying mitochondrial proteins. [My Copy] Comput Appl Biosci, Vol. 11, No. 4. (August 1995), pp. 441-447. by M. G. Claros posted to bioinformatics localization methodspaper mitochondria prediction by raiyar on 2008-02-22 10:12:26 as
	Predotar: A tool for rapidly screening proteomes for <B><I>N</I></B>-terminal targeting sequences [My Copy] PROTEOMICS, Vol. 4, No. 6. (2004), pp. 1581-1590. by Ian Small, Nemo Peeters, Fabrice Legeai, Claire Lurin posted to bioinformatics localization methodspaper mitochondria prediction by raiyar on 2008-02-22 10:10:50 as
	WoLF PSORT: protein localization predictor. [My Copy] Nucleic Acids Res, Vol. 35, No. Web Server issue. (July 2007) by P. Horton, K. J. Park, T. Obayashi, et al.N. Fujita, H. Harada, C. J. Adams-Collier, K. Nakai posted to bioinformatics localization methodspaper mitochondria prediction by raiyar on 2008-02-22 10:09:32 as
	PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. [My Copy] Trends Biochem Sci, Vol. 24, No. 1. (January 1999), pp. 34-36. by K. Nakai, P. Horton posted to basis bioinformatics localization methodspaper mitochondria prediction by raiyar on 2008-02-22 10:07:57 as
	MITOPRED: a web server for the prediction of mitochondrial proteins. [My Copy] Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004) by C. Guda, P. Guda, E. Fahy, S. Subramaniam posted to bioinformatics human methodspaper mitochondria prediction yeast by raiyar on 2008-02-22 10:03:41 as
	Broad network-based predictability of Saccharomyces cerevisiae gene loss-of-function phenotypes. [My Copy] Genome biology, Vol. 8, No. 12. (2007) by Kriston L. McGary, Insuk Lee, Edward M. Marcotte posted to bioinformatics complex_trait disease genomics methodspaper model mutant network prediction yeast by raiyar on 2008-02-18 11:01:55 as along with 6 people benjaminsb jiny cjeans biomcgary barriot entropy
	Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome [My Copy] Genome Biology, Vol. 6, No. 5. (2005), R40. by Arun Ramani, Razvan Bunescu, Raymond Mooney, Edward Marcotte posted to bioinformatics human interaction methodspaper network prediction textmining by raiyar on 2008-01-28 13:58:50 as along with 19 people and 5 groups fesousa ggallone yaredo setar tmmurali dragonrez okarsligil lfriedl ccots balajis maryee brant opheliav davidandrzej wnpx rlhsiao bundschu mikaelhuss grahamc Complex Networks Jarman Lab kdl Bioinformatics generif_paper
	SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data. [My Copy] Bioinformatics, Vol. 23, No. 11. (1 June 2007), pp. 1410-1417. by H. Shatkay, A. Höglund, S. Brady, T. Blum, P. Dönnes, O. Kohlbacher posted to bioinformatics integration localization methodspaper prediction textmining by raiyar on 2008-01-07 22:20:45 as along with 2 people ptrobajo mdstobbe
	Reverse engineering of regulatory networks in human B cells. [My Copy] Nat Genet (20 March 2005) by Katia Basso, Adam A A. Margolin, Gustavo Stolovitzky, Ulf Klein, Riccardo Dalla-Favera, Andrea Califano posted to human interaction network prediction regulation by raiyar on 2007-12-19 21:17:46 as along with 12 people Neeperando akraemer verdicchio ggallone snuppepuppan kentsis dragonrez jfr wnpx naegele heliopais lylu
	Detecting multiple associations in genome-wide studies. [My Copy] Hum Genomics, Vol. 2, No. 5. (March 2006), pp. 310-317. by F. Dudbridge, A. Gusnanto, B. P. Koeleman posted to complex_trait disease genomics methodspaper prediction review by raiyar on 2007-12-19 21:11:37 as
	Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes. [My Copy] American journal of human genetics, Vol. 78, No. 6. (June 2006), pp. 1011-1025. by L. Franke, H. van Bakel, L. Fokkens, E. D. de Jong, M. Egmont-Petersen, C. Wijmenga posted to bioinformatics disease genomics human interaction methodspaper network parts-list prediction by raiyar on 2007-11-16 13:04:02 as along with 10 people and 1 group eesruiz saket agonzale jfr snuppepuppan guhjy lfriedl tabu samal mmt kdl
	Evaluation of predicted network modules in yeast metabolism using NMR-based metabolite profiling. [My Copy] Genome Res, Vol. 17, No. 4. (April 2007), pp. 510-519. by J. G. Bundy, B. Papp, R. Harmston, et al.R. A. Browne, E. M. Clayson, N. Burton, R. J. Reece, S. G. Oliver, K. M. Brindle posted to bioinformatics deletion metabolic_profiling methodspaper model network prediction technique yeast by raiyar on 2007-06-08 09:33:01 as along with 2 people and 1 group fishtank alexg steinmetzlab
	Systems biology, metabolic modelling and metabolomics in drug discovery and development. [My Copy] Drug discovery today, Vol. 11, No. 23-24. (December 2006), pp. 1085-1092. by Douglas B. Kell posted to genomics metabolic metabolic_profiling methodspaper model network prediction review systems by raiyar on 2007-05-02 12:44:16 as along with 13 people and 2 groups peterli flbarroso schwartzjmc egonw irenas nicklynch alexg dullhunk mhucka fishtank shikin alanrw gemmalholliday steinmetzlab GeneGo
	Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data [My Copy] Theoretical Biology and Medical Modelling, Vol. 3 (15 December 2006), 42. by Wolfram Liebermeister, Edda Klipp posted to bioinformatics flux metabolic methodspaper model network prediction statistics systems technique by raiyar on 2007-04-23 16:54:29 as along with 5 people and 1 group lflorez guhjy wnpx fishtank jrbanga steinmetzlab
	Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments. [My Copy] Briefings in bioinformatics, Vol. 7, No. 4. (1 December 2006), pp. 364-374. by Natal A. van Riel posted to bioinformatics metabolic model network prediction review systems technique by raiyar on 2007-04-23 15:48:44 as along with 4 people and 1 group bertelsen abhishek_tiwari wnpx fishtank steinmetzlab
	Computational approaches for the prediction of protein function in the mitochondrion. [My Copy] Am J Physiol Cell Physiol, Vol. 291, No. 6. (December 2006) by T. Gabaldón posted to methodspaper mitochondria prediction by raiyar on 2007-01-22 13:03:30 as along with 1 group steinmetzlab

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mitochondria	161
methodspaper	121
yeast	115
review	90
disease	81
genomics	68
human	54
mtdna	49
network	48
projmt	47
analysis	43
bioinformatics	43
systems	40
genetic	39
prediction	39
basis	38
mutant	38
ht	37
technique	35
integration	34
model	32
localization	31
mitotarget	29
parts-list	28
example	26
interaction	25
proteomics	25
regulation	24
respiration	24
deletion	22
expression	22
metabolic	22
sgtcnih	20
compound	19
interest	19
qtl	19
tool	16
transcription	16
allotopic	15
statistics	14
array	13
atp6	13
goodref	13
litrev	13
personalgenomics	13
complex_trait	12
defect	12
evolution	12
projnarp	12
ros	12
db	11
projmicr	11
ellstalk	10
morphology	10
chemgen	9
mouse	9
drosophila	8
flux	8
metabolic_profiling	8
narp	8
variant	8
genes	7
im	7
mtknockout	7
rescue	7
target	7
aging	6
chlamydomonas	6
medicine	6
tac2	6
atp8	5
barcode	5
cancer	5
ms	5
textmining	5
complex	4
mendelian	4
pharmacogen	4
population	4
ym2008	4
cox2	3
cox3	3
dhla	3
future	3
haploinsufficiency	3
methodspaper2	3
microscopy	3
petite	3
rflp	3
rnai	3
snp	3
therapeutic	3
tiling	3
ts	3
atp9	2
c7	2
condition	2
diauxic	2
hap1	2
phenotype	2
recombinant	2
rha	2
tacqa	2
tap	2
apoptosis	1
berlin	1
clinical	1
cob	1
development	1
diagnosis	1
electom	1
fg2008	1
learning	1
motif	1
pathway	1
quantitative	1
rec	1
recombination	1
resource	1
sl	1
tf	1
toxin	1
translation	1
vector	1
yjm789	1

raiyar's prediction [39 articles] Export

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