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	In silico Structural Study of Random Amino Acid Sequence Proteins Not Present in Nature. [My Copy] Chemistry & biodiversity, Vol. 6, No. 12. (17 December 2009), pp. 2311-2336. by Katarzyna Prymula, Monika Piwowar, Marek Kochanczyk, et al.Lukasz Flis, Maciej Malawski, Tomasz Szepieniec, Giovanni Evangelista, Giuseppe Minervini, Fabio Polticelli, Zdzisław Wiśniowski, Kinga Sałapa, Ewa Matczyńska, Irena Roterman posted to rosetta protein_structure_prediction by rasfonseca on 2009-12-20 07:56:52 as
	Protein folding simulation with genetic algorithm and supersecondary structure constraints. [My Copy] Proteins, Vol. 31, No. 3. (15 May 1998), pp. 247-257. by Y. Cui, R. S. Chen, W. H. Wong posted to supersecondary_structure protein_structure genetic_algorithm constraints by rasfonseca on 2009-11-25 13:10:35 as
	Matching protein beta-sheet partners by feedforward and recurrent neural networks. [My Copy] Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology, Vol. 8 (2000), pp. 25-36. by P. Baldi, G. Pollastri, C. A. Andersen, S. Brunak posted to proteins beta_sheets beta_sheet by rasfonseca on 2009-11-24 12:21:35 as
	ASTRO-FOLD: a combinatorial and global optimization framework for Ab initio prediction of three-dimensional structures of proteins from the amino acid sequence. [My Copy] Biophysical journal, Vol. 85, No. 4. (October 2003), pp. 2119-2146. by J. L. Klepeis, C. A. Floudas posted to proteins protein_structure_prediction by rasfonseca on 2009-11-24 12:18:56 as along with 1 person flbarroso
	Protein structure prediction aided by geometrical and probabilistic constraints. [My Copy] Journal of computational chemistry, Vol. 28, No. 12. (20 September 2007), pp. 1943-1952. by Gaurav Porwal, Swapnil Jain, S. Dhilly Babu, Deepak Singh, Hemant Nanavati, Santosh Noronha posted to proteins protein_representation beta_sheets beta_sheet by rasfonseca on 2009-11-24 12:17:36 as along with 1 person wouterboomsma
	Distributions of beta sheets in proteins with application to structure prediction. [My Copy] Proteins, Vol. 48, No. 1. (1 July 2002), pp. 85-97. by Ingo Ruczinski, Charles Kooperberg, Richard Bonneau, David Baker posted to proteins protein_structure beta_sheets beta_sheet by rasfonseca on 2009-11-24 10:51:42 as along with 1 person jwm
	Prediction of the structural motifs of sandwich proteins [My Copy] Proceedings of the National Academy of Sciences of the United States of America In Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 48. (30 November 2004), pp. 16780-16783. by A. S. Fokas, I. M. Gelfand, A. E. Kister posted to proteins protein_structure beta_sheets beta_sheet by rasfonseca on 2009-11-24 10:48:35 as along with 1 person dfdong
	Optimization by Simulated Annealing: An Experimental Evaluation; Part I, Graph Partitioning [My Copy] OPERATIONS RESEARCH, Vol. 37, No. 6. (1 November 1989), pp. 865-892. by David S. Johnson, Cecilia R. Aragon, Lyle A. McGeoch, Catherine Schevon posted to simulated_annealing heuristic by rasfonseca on 2009-10-06 20:02:57 as
	A New Method for Fast and Accurate Derivation of Molecular Conformations [My Copy] Journal of Chemical Information and Computer Sciences, Vol. 42 (2002), pp. 64-70. by Ming Zhang, Lydia E. Kavraki, I. Lydia, E. Kavraki posted to proteins protein_structure protein_representation conformational_search by rasfonseca on 2009-10-05 12:16:12 as
	Prediction of protein coarse contact maps. [My Copy] Journal of bioinformatics and computational biology, Vol. 1, No. 2. (July 2003), pp. 411-431. by Alessandro Vullo, Paolo Frasconi posted to proteins protein_structure predictions by rasfonseca on 2009-09-28 14:58:11 as
	Kappa-alpha plot derived structural alphabet and BLOSUM-like substitution matrix for rapid search of protein structure database [My Copy] Genome Biology, Vol. 8, No. 3. (03 March 2007), R31. by Chi H. Tung, Jhang W. Huang, Jinn M. Yang posted to proteins protein_structure protein_representation by rasfonseca on 2009-09-28 08:57:49 as
	Protein Decoy Generation Using Branch and Bound with Efficient Bounding [My Copy] Algorithms in Bioinformatics (2008), pp. 382-393. by Martin Paluszewski, Pawel Winter posted to protein_structure protein_representation decoys by rasfonseca on 2009-09-28 08:56:29 as
	Finding minimal enclosing boxes [My Copy] International Journal of Parallel Programming, Vol. 14, No. 3. (1 June 1985), pp. 183-199. by Joseph O'Rourke posted to minimum_volume convex_hull algorithmic_geometry by rasfonseca on 2009-09-28 08:22:14 as
	Natural coordinate representation for the protein backbone structure. [My Copy] Proteins, Vol. 49, No. 2. (1 November 2002), pp. 206-215. by Cornelius G. Hunter, Shankar Subramaniam posted to search_space proteins protein_representation degrees_of_freedom by rasfonseca on 2009-09-27 19:31:03 as
	The complexity and accuracy of discrete state models of protein structure. [My Copy] Journal of molecular biology, Vol. 249, No. 2. (2 June 1995), pp. 493-507. by B. H. Park, M. Levitt posted to search_space proteins protein_representation by rasfonseca on 2009-09-27 19:28:41 as
	Algorithm and Data Structures for Efficient Energy Maintenance during Monte Carlo Simulation of Proteins [My Copy] Journal of Computational Biology, Vol. 11 (2003) by Itay Lotan, Fabian Schwarzer, Dan Halperin, Jean-claude Latombe posted to proteins kinematics kinematic_chains energy_functions degrees_of_freedom chain-tree algorithmic_geometry by rasfonseca on 2009-09-27 19:15:20 as
	A Note on Approximate Minimum Volume Enclosing Ellipsoid of Ellipsoids [My Copy] Computational Science and its Applications, International Conference, Vol. 0 (2008), pp. 478-487. by Sachin Jambawalikar, Piyush Kumar posted to ellipsoid algorithmic_geometry by rasfonseca on 2009-09-27 15:16:15 as
	Fast Proximity Queries with Swept Sphere Volumes [My Copy] (1999) by Eric Larsen, Stefan Gottschalk, Ming C. Lin, Dinesh Manocha posted to proteins line_swept_sphere capsule algorithmic_geometry by rasfonseca on 2009-09-27 12:49:41 as along with 1 person malkav30
	Visualization and Analysis of Protein Structures Using Euclidean Voronoi Diagram of Atoms [My Copy] Computational Science and Its Applications – ICCSA 2005 (2005), pp. 993-1002. by Deok-Soo Kim, Donguk Kim, Youngsong Cho, et al.Joonghyun Ryu, Cheol-Hyung Cho, Joon Y. Park, Hyun C. Lee posted to voronoi_diagram proteins algorithmic_geometry by rasfonseca on 2009-09-27 12:00:28 as
	Pocket Recognition on a Protein Using Euclidean Voronoi Diagram of Atoms [My Copy] Computational Science and Its Applications – ICCSA 2005 (2005), pp. 707-715. by Deok-Soo Kim, Cheol-Hyung Cho, Youngsong Cho, Chung I. Won, Donguk Kim posted to proteins algorithmic_geometry by rasfonseca on 2009-09-27 11:55:36 as

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