rdiaz's acgh [67 articles] Export

Recent papers added to rdiaz's library classified by the tag acgh. You can also see everyone's acgh.

	Classification of array CGH data using smoothed logistic regression model. [My Copy] Statistics in medicine (23 October 2009) by Jian Huang, Agus Salim, Kaibin Lei, Kathleen O'Sullivan, Yudi Pawitan posted to regression logistic classification acgh by rdiaz on 2009-11-27 15:07:20 as
	Accurate confidence aware clustering of array CGH tumor profiles. [My Copy] Bioinformatics (Oxford, England) (21 October 2009), btp603. by Bart P. van Houte, Jaap Heringa posted to recurrent common clustering cluster acgh by rdiaz on 2009-11-27 15:07:05 as along with 3 people nuin shigepong frohike
	Recurrent copy number alterations in BRCA1-mutated ovarian tumors alter biological pathways. [My Copy] Human mutation (2 October 2009) by Karin Leunen, Olivier Gevaert, Anneleen Daemen, et al.Vanessa Vanspauwen, Geneviève Michils, Bart De Moor, Philippe Moerman, Ignace Vergote, Eric Legius posted to recurrent method hmm example cnv acgh by rdiaz on 2009-10-09 10:06:13 as along with 1 person frohike
	Detection of recurrent copy number alterations in the genome: taking among-subject heterogeneity seriously [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (23 September 2009), 308. by Oscar Rueda, Ramon D. Uriarte posted to recurrent common cnv cgh acgh by rdiaz on 2009-10-01 11:10:47 as along with 1 person frohike
	Genomic profiling distinguishes familial multiple and sporadic multiple meningiomas [My Copy] BMC Medical Genomics, Vol. 2, No. 1. (2009), 42. by Yiping Shen, Fabio Nunes, Anat S. Rachamimov, et al.Marianne James, Gayatry Mohapatra, Scott Plotkin, Rebecca Betensky, David Engler, Jennifer Roy, Vijaya Ramesh, James Gusella posted to regions instability common cnv classification chromosomal cgh acgh by rdiaz on 2009-10-01 09:26:22 as
	A Latent Class Model with Hidden Markov Dependence for Array CGH Data. [My Copy] Biometrics, Vol. 9999, No. 9999. (7 April 2009) by Stacia M. Desantis, E. Andrés Houseman, Brent A. Coull, David N. Louis, Gayatry Mohapatra, Rebecca A. Betensky posted to hmm cnv classification cgh acgh by rdiaz on 2009-09-28 17:26:48 as along with 1 person kdpreter
	Oligonucleotide Array-CGH Identifies Genomic Subgroups and Prognostic Markers for Tumor Stage Mycosis Fungoides [My Copy] J Invest Dermatol (17 September 2009) by Rocio Salgado, Octavio Servitje, Fernando Gallardo, et al.Maarten H. Vermeer, Pablo L. Ortiz-Romero, Maria B. Karpova, Marie C. Zipser, Cristina Muniesa, Maria P. Garcia-Muret, Teresa Estrach, Marta Salido, Julia Sanchez-Schmidt, Marta Herrera, Vicenc Romagosa, Javier Suela, Bibiana I. Ferreira, Juan C. Cigudosa, Carlos Barranco, Sergio Serrano, Reinhard Dummer, Cornelis P. Tensen, Francesc Sole, Ramon M. Pujol, Blanca Espinet posted to survival stability region instability genomic example common cgh acgh by rdiaz on 2009-09-28 15:19:34 as
	Personalized copy number and segmental duplication maps using next-generation sequencing. [My Copy] Nature genetics, Vol. 41, No. 10. (30 October 2009), pp. 1061-1067. by Can Alkan, Jeffrey M. Kidd, Tomas Marques-Bonet, et al.Gozde Aksay, Francesca Antonacci, Fereydoun Hormozdiari, Jacob O. Kitzman, Carl Baker, Maika Malig, Onur Mutlu, S. Cenk Sahinalp, Richard A. Gibbs, Evan E. Eichler posted to sequencing cnv cgh acgh by rdiaz on 2009-09-03 14:01:24 as along with 30 people and 1 group ongenetics chvlyl leemachado daed gbenson n00c bozdagd dakelley sbmontgomery eshirdel merpublic shyamsg scmelton qayub natstreet fenghezi Annab djkt nuin xingxu jamesmorris brant torfinnnome jandot pkonings danmaclean daforerog frohike rschulz gangcai Journal picks
	CGHnormaliter: an iterative strategy to enhance normalization of array CGH data with imbalanced aberrations [My Copy] BMC Genomics, Vol. 10, No. 1. (26 August 2009), 401. by Bart van Houte, Thomas Binsl, Hannes Hettling, Walter Pirovano, Jaap Heringa posted to normalization cgh acgh by rdiaz on 2009-09-03 14:00:27 as
	Sensitive and accurate detection of copy number variants using read depth of coverage [My Copy] Genome Research, Vol. 19, No. 9. (5 September 2009), pp. 1586-1592. by Seungtai Yoon, Zhenyu Xuan, Vladimir Makarov, Kenny Ye, Jonathan Sebat posted to software sequencing sequence method cnv acgh by rdiaz on 2009-08-18 14:42:04 as along with 7 people woodson8 scmelton torfinnnome dakelley n00c jbhiatt pkonings
	PennCNV: An integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data [My Copy] Genome Research, Vol. 17, No. 11. (5 November 2007), pp. 1665-1674. by Kai Wang, Mingyao Li, Dexter Hadley, et al.Rui Liu, Joseph Glessner, Struan F. A. Grant, Hakon Hakonarson, Maja Bucan posted to acgh cgh penncnv snp by rdiaz on 2009-07-20 18:01:49 as along with 2 people vplagnol jfr
	A computational procedure to identify significant overlap of differentially expressed and genomic imbalanced regions in cancer datasets. [My Copy] Nucleic acids research, Vol. 37, No. 15. (1 August 2009), pp. 5057-5070. by Silvio Bicciato, Roberta Spinelli, Mattia Zampieri, et al.Eleonora Mangano, Francesco Ferrari, Luca Beltrame, Ingrid Cifola, Clelia Peano, Aldo Solari, Cristina Battaglia posted to acgh cnv expression integration by rdiaz on 2009-06-29 15:17:30 as along with 1 person frohike
	Data integration from two microarray platforms identifies bi-allelic genetic inactivation of RIC8A in a breast cancer cell line. [My Copy] BMC medical genomics, Vol. 2 (2009) by Aslaug Aamodt A. Muggerud, Henrik Edgren, Maija Wolf, et al.Kristine Kleivi, Emelyne Dejeux, Jörg Tost, Therese Sørlie, Olli Kallioniemi posted to acgh cnv expression integration methylation mutation by rdiaz on 2009-05-26 12:23:36 as along with 1 person giovenko
	DNA copy number profiles of primary tumors as predictors of response to chemotherapy in advanced colorectal cancer. [My Copy] Annals of oncology : official journal of the European Society for Medical Oncology / ESMO (15 January 2009) by C Postma, M Koopman, T E E. Buffart, et al.P P P. Eijk, B Carvalho, G J J. Peters, B Ylstra, J H H. van Krieken, C J A J. Punt, G A A. Meijer posted to acgh classification cnv by rdiaz on 2009-05-26 12:14:47 as along with 1 person jfr
	High-resolution DNA copy number and gene expression analyses distinquish chromophobe renal cell carcinomas and renal oncocytomas [My Copy] BMC Cancer, Vol. 9 (18 May 2009), 152. by Maria, Gyula Kovacs posted to acgh classification cnv expression by rdiaz on 2009-05-26 12:05:17 as
	Joint Analysis of DNA Copy Numbers and Gene Expression Levels [My Copy] Algorithms in Bioinformatics (2004), pp. 135-146. by Doron Lipson, Amir Ben-Dor, Elinor Dehan, Zohar Yakhini posted to acgh cnv expression integration by rdiaz on 2009-04-28 15:02:11 as
	Regional copy number–independent deregulation of transcription in cancer [My Copy] Nature Genetics, Vol. 38, No. 12. (12 November 2006), pp. 1386-1396. by Nicolas Stransky, Céline Vallot, Fabien Reyal, et al.Isabelle Bernard-Pierrot, Sixtina, Rick Segraves, Yann de Rycke, Paul Elvin, Andrew Cassidy, Carolyn Spraggon, Alexander Graham, Jennifer Southgate, Bernard Asselain, Yves Allory, Claude C. Abbou, Donna G. Albertson, Jean P. Thiery, Dominique K. Chopin, Daniel Pinkel, François Radvanyi posted to acgh cnv expression integration by rdiaz on 2009-04-22 16:32:32 as along with 3 people jfr shigepong bioyang
	Normalization of array-CGH data: influence of copy number imbalances [My Copy] BMC Genomics, Vol. 8, No. 1. (22 October 2007), 382. by Johan Staaf, Goran Jonsson, Markus Ringner, Johan V. Christersson posted to acgh normalization by rdiaz on 2009-04-20 17:49:52 as along with 3 people stharward magusina jfr
	Array CGH data modeling and smoothing in Stationary Wavelet Packet Transform domain. [My Copy] BMC genomics, Vol. 9 Suppl 2 (2008) by H. Huang, N. Nguyen, S. Oraintara, A. Vo posted to acgh method by rdiaz on 2009-04-20 17:47:10 as along with 1 person jfr
	A new classification method using array Comparative Genome Hybridization data, based on the concept of Limited Jumping Emerging Patterns. [My Copy] BMC bioinformatics, Vol. 10 Suppl 1 (2009) by T. Gambin, K. Walczak posted to acgh classification cnv by rdiaz on 2009-04-20 17:41:10 as
	Integrating chromosomal aberrations and gene expression profiles to dissect rectal tumorigenesis [My Copy] BMC Cancer, Vol. 8, No. 1. (2008), 314. by Esther Lips, Ronald van Eijk, Eelco de Graaf, et al.Jan Oosting, Noel de Miranda, Tom Karsten, Cornelis van de Velde, Paul Eilers, Rob Tollenaar, Tom van Wezel, Hans Morreau posted to acgh classification cnv expression integration by rdiaz on 2009-04-02 14:29:21 as along with 7 people dolchan zufar tvanwezel jfr imina ealloza frohike
	Genetic regulators of large-scale transcriptional signatures in cancer. [My Copy] Nature genetics, Vol. 38, No. 4. (05 April 2006), pp. 421-430. by Adam S. Adler, Meihong Lin, Hugo Horlings, Dimitry S. Nuyten, Marc J. van de Vijver, Howard Y. Chang posted to acgh cgh expression integration by rdiaz on 2009-04-02 14:26:05 as along with 6 people huiminC jfr tuck ccots Ao_Li2007 oelemento
	Copy number alterations that predict metastatic capability of human breast cancer. [My Copy] Cancer research, Vol. 69, No. 9. (1 May 2009), pp. 3795-3801. by Yi Zhang, John W. Martens, Jack X. Yu, et al.John Jiang, Anieta M. Sieuwerts, Marcel Smid, Jan G. Klijn, Yixin Wang, John A. Foekens posted to acgh classification cnv expression integration prediction by rdiaz on 2009-04-02 14:25:45 as along with 4 people jfr giovenko frohike kdpreter
	Outcome Prediction in Pediatric Medulloblastoma Based on DNA Copy-Number Aberrations of Chromosomes 6q and 17q and the MYC and MYCN Loci [My Copy] J Clin Oncol, Vol. 27, No. 10. (1 April 2009), pp. 1627-1636. by Stefan Pfister, Marc Remke, Axel Benner, et al.Frank Mendrzyk, Grischa Toedt, Jorg Felsberg, Andrea Wittmann, Frauke Devens, Nicolas U. Gerber, Stefan Joos, Andreas Kulozik, Guido Reifenberger, Stefan Rutkowski, Otmar D. Wiestler, Bernhard Radlwimmer, Wolfram Scheurlen, Peter Lichter, Andrey Korshunov posted to acgh classification cnv prediction by rdiaz on 2009-04-02 14:25:27 as along with 1 person kdpreter
	Copy number variation goes clinical [My Copy] Genome Biology, Vol. 10, No. 1. (23 January 2009), 301. by Cedric Le Caignec, Richard Redon posted to acgh cgh cnv review by rdiaz on 2009-03-23 10:47:36 as along with 1 person jandot
	Supervised classification of array CGH data with HMM-based feature selection [My Copy] posted to acgh cgh classification hmm by rdiaz on 2009-02-18 09:47:12 as
	Combined use of expression and CGH arrays pinpoints novel candidate genes in Ewing sarcoma family of tumors [My Copy] BMC Cancer, Vol. 9 (14 January 2009), 17. by Suvi, Sakari Knuutila posted to acgh expression by rdiaz on 2009-02-11 15:58:33 as along with 1 person Terkko
	A probe-density-based analysis method for array CGH data: simulation, normalization and centralization [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. 1749-1756. by Hung-I H. Chen, Fang-Han Hsu, Yuan Jiang, et al.Mong-Hsun Tsai, Pan-Chyr Yang, Paul S. Meltzer, Eric Y. Chuang, Yidong Chen posted to acgh normalization by rdiaz on 2009-01-09 14:03:28 as along with 6 people stharward noushin jfr talponer nuin ellakat
	Bayesian DNA copy number analysis [My Copy] BMC Bioinformatics, Vol. 10 (08 January 2009), 10. by Paola, Ivo Kwee posted to acgh bayesian cnv by rdiaz on 2009-01-09 11:39:04 as along with 6 people guhjy noushin nuin mhamada xieminzhu pkonings
	A fast Bayesian change point analysis for the segmentation of microarray data [My Copy] Bioinformatics, Vol. 24, No. 19. (1 October 2008), pp. 2143-2148. by Chandra Erdman, John W. Emerson posted to acgh bayesian cnv hmm by rdiaz on 2008-10-13 18:25:57 as along with 2 people guhjy talponer
	What a difference copy number variation makes [My Copy] BioEssays, Vol. 29, No. 4. (2007), pp. 311-313. by Hildegard Kehrer-Sawatzki posted to acgh by rdiaz on 2007-10-29 08:48:59 as along with 6 people and 3 groups biovils Zephyrus balicea dchughes cerami guhjy Bioinformatics G4ID Genetics-of-Gambling
	Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome [My Copy] Science, Vol. 318, No. 5849. (19 October 2007), pp. 420-426. by Jan O. Korbel, Alexander E. Urban, Jason P. Affourtit, et al.Brian Godwin, Fabian Grubert, Jan F. Simons, Philip M. Kim, Dean Palejev, Nicholas J. Carriero, Lei Du, Bruce E. Taillon, Zhoutao Chen, Andrea Tanzer, A. C. Eugenia Saunders, Jianxiang Chi, Fengtang Yang, Nigel P. Carter, Matthew E. Hurles, Sherman M. Weissman, Timothy T. Harkins, Mark B. Gerstein, Michael Egholm, Michael Snyder posted to acgh cgh cnv pem sequencing by rdiaz on 2007-10-18 15:50:05 as along with 22 people and 2 groups torfinnnome jandot n00c jonilaserson jrvalcourt APRegier jessopher hpaces Zephyrus pkonings orzenil stuetz matthewsuderman dpollard dchughes AaronDarling giovanni jlangdon annacarina07 Neeperando jfr caseybrown Journal picks EisenLab
	Mutational and selective effects on copy-number variants in the human genome. [My Copy] Nat Genet, Vol. 39, No. 7 Suppl. (July 2007) by G. M. Cooper, D. A. Nickerson, E. E. Eichler posted to acgh by rdiaz on 2007-10-17 11:49:36 as along with 3 people and 1 group waszak daed mrkrause Bioinformatics
	Methods and strategies for analyzing copy number variation using DNA microarrays. [My Copy] Nature genetics, Vol. 39, No. 7 Suppl. (July 2007) by Nigel P. Carter posted to acgh by rdiaz on 2007-10-17 11:45:37 as along with 5 people and 1 group vplagnol jo_davies guhjy jfr mrkrause Bioinformatics
	The population genetics of structural variation. [My Copy] Nature genetics, Vol. 39, No. 7 Suppl. (July 2007) by Donald F. Conrad, Matthew E. Hurles posted to acgh by rdiaz on 2007-10-17 11:42:37 as along with 5 people sameersoi APRegier guhjy mrkrause jlangdon
	Challenges and standards in integrating surveys of structural variation [My Copy] Nature Genetics, Vol. 39, No. 7 Suppl. (27 June 2007), pp. S7-S15. by Stephen W. Scherer, Charles Lee, Ewan Birney, et al.David M. Altshuler, Evan E. Eichler, Nigel P. Carter, Matthew E. Hurles, Lars Feuk posted to acgh by rdiaz on 2007-10-17 11:40:53 as along with 7 people and 1 group owenlancaster dakelley brianb guhjy bpb jlangdon jasonflannick Bioinformatics
	Copy-number variation and association studies of human disease. [My Copy] Nature genetics, Vol. 39, No. 7 Suppl. (July 2007) by Steven A. McCarroll, David M. Altshuler posted to acgh by rdiaz on 2007-10-17 11:34:43 as along with 9 people and 1 group psique daforerog waszak jo_davies vplagnol guhjy mrkrause balicea jasonflannick Bioinformatics
	Copy number variants and genetic traits: closer to the resolution of phenotypic to genotypic variability [My Copy] Nat Rev Genet, Vol. 8, No. 8. (2007), pp. 639-646. by Jacques S. Beckmann, Xavier Estivill, Stylianos E. Antonarakis posted to acgh by rdiaz on 2007-10-17 11:31:32 as along with 5 people and 1 group sameersoi gruberjd frohike waszak ryanraaum Bioinformatics
	Copy number variations and clinical cytogenetic diagnosis of constitutional disorders [My Copy] Nature Genetics, Vol. 39 (2007), pp. S48-S54. by C. Lee, A. J. Iafrate, A. R. Brothman posted to acgh by rdiaz on 2007-10-02 11:44:07 as
	Genomic rearrangements and sporadic disease [My Copy] Nature Genetics, Vol. 39 (2007), pp. S43-S47. by J. R. Lupski posted to acgh by rdiaz on 2007-10-02 11:44:04 as
	Untitled [My Copy] posted to acgh by rdiaz on 2007-10-02 11:43:43 as
	GENOMICS: A Little Gene Xeroxing Goes a Long Way [My Copy] Science, Vol. 317, No. 5844. (14 September 2007), 1483a. by Jon Cohen posted to acgh by rdiaz on 2007-09-28 11:09:34 as
	A new algorithm for detecting low-complexity regions in protein sequences [My Copy] Bioinformatics, Vol. 21, No. 2. (January 2005), pp. 160-170. by Sung W. Shin, Sam M. Kim posted to acgh by rdiaz on 2007-09-27 15:11:29 as along with 6 people nearora sdvillal florianleitner tale Bc91 Evangelia
	A robust algorithm for copy number detection using high-density oligonucleotide single nucleotide polymorphism genotyping arrays. [My Copy] Cancer Res, Vol. 65, No. 14. (15 July 2005), pp. 6071-6079. by Y. Nannya, M. Sanada, K. Nakazaki, et al.N. Hosoya, L. Wang, A. Hangaishi, M. Kurokawa, S. Chiba, D. K. Bailey, G. C. Kennedy, S. Ogawa posted to acgh by rdiaz on 2007-03-26 17:04:57 as along with 5 people noushin jfr bioguru2000 cpnP debasis
	Computational Methods for the Analysis of Array Comparative Genomic Hybridization [My Copy] Cancer Informatics, Vol. 2 (2006) by Raj Chari, William W. Lockwood, Wan L. Lam1 posted to acgh by rdiaz on 2007-03-26 16:06:49 as
	CGHScan: finding variable regions using high-density microarray comparative genomic hybridization data [My Copy] BMC Genomics, Vol. 7, No. 1. (2006) by Bradley Anderson, Michael Gilson, Abigail Scott, et al.Bryan Biehl, Jeremy Glasner, Gireesh Rajashekara, Gary Splitter, Nicole Perna posted to acgh by rdiaz on 2007-03-26 16:01:07 as
	Integrating data on DNA copy number with gene expression levels and drug sensitivities in the NCI-60 cell line panel. [My Copy] Mol Cancer Ther, Vol. 5, No. 4. (April 2006), pp. 853-867. by K. J. Bussey, K. Chin, S. Lababidi, et al.M. Reimers, W. C. Reinhold, W. L. Kuo, F. Gwadry, Ajay, H. Kouros-Mehr, J. Fridlyand, A. Jain, C. Collins, S. Nishizuka, G. Tonon, A. Roschke, K. Gehlhaus, I. Kirsch, D. A. Scudiero, J. W. Gray, J. N. Weinstein posted to acgh cnv expression integration nci60 by rdiaz on 2007-03-02 16:08:06 as along with 2 people jfr bioguru2000
	arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by B. Menten, F. Pattyn, K. De Preter, et al.P. Robbrecht, E. Michels, K. Buysse, G. Mortier, A. De Paepe, S. van Vooren, J. Vermeesch, Y. Moreau, B. De Moor, S. Vermeulen, F. Speleman, J. Vandesompele posted to acgh adacgh by rdiaz on 2006-12-20 13:53:20 as
	WebArray: an online platform for microarray data analysis [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005), 306. by Xiaoqin Xia, Michael Mcclelland, Yipeng Wang posted to acgh adacgh by rdiaz on 2006-12-20 13:49:24 as along with 4 people natstreet bertelsen angelicabtto daforerog
	Genomic microarrays in human genetic disease and cancer. [My Copy] Hum Mol Genet, Vol. 12 Spec No 2 (15 October 2003) by D. G. Albertson, D. Pinkel posted to acgh by rdiaz on 2006-08-17 13:34:03 as

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extinction	1
sperm	1
regularization	1
discriminant	1
bac	1
tiling	1
genes	1
intersection	1
probability	1
truth	1
target	1
gate	1
scale	1
mislabeled	1
research	1
splicing	1
global	1
mammaprint	1
gpu	1
specificity	1
parallel	1
context	1
large	1
biomarkers	1
binding	1
uncertainty_propagation	1
synthetic	1
society	1
methods	1
svd	1
pca	1
alu	1
isi	1
web-based	1
latent	1
penncnv	1
case-control	1
classfication	1
single-gene	1
auc	1
learning	1
cv	1
experimental_designs	1
5	1
catalogue	1
smooth	1
experiment	1
beadchip	1
internet	1
coregulation	1
familial	1
emphisema	1
transcription_factors	1
google	1
decision	1
reconstrucion	1
performance	1
oligonucleotide	1
new	1
platform	1
pep	1
pair	1
mobby	1
psychiatry	1
cooperation	1
signs	1
tumor	1
programmable	1
family	1

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