rdiaz's cgh [99 articles] Export

Recent papers added to rdiaz's library classified by the tag cgh. You can also see everyone's cgh.

	Integrated Analysis of Copy Number Alterations and Gene Expression: A Bivariate Assessment of Equally Directed Abnormalities [My Copy] Bioinformatics (14 October 2009), btp592. by Martin Schafer, Holger Schwender, Sylvia Merk, Claudia Haferlach, Katja Ickstadt, Martin Dugas posted to integration expression cnv cgh by rdiaz on 2009-10-15 16:56:24 as
	Array comparative genomic hybridization copy number profiling: a new tool for translational research in solid malignancies. [My Copy] Seminars in radiation oncology, Vol. 18, No. 2. (April 2008), pp. 98-104. by José Luis L. Costa, Gerrit Meijer, Bauke Ylstra, Carlos Caldas posted to translational classification cgh by rdiaz on 2009-10-01 15:26:23 as along with 1 person abhattac
	BAC array CGH distinguishes mutually exclusive alterations that define clinicogenetic subtypes of gliomas. [My Copy] International journal of cancer. Journal international du cancer, Vol. 122, No. 8. (15 April 2008), pp. 1778-1786. by Ahmed Idbaih, Yannick Marie, Carlo Lucchesi, et al.Gaëlle Pierron, Elodie Manié, Virginie Raynal, Véronique Mosseri, Khê Hoang-Xuan, Michèle Kujas, Isabel Brito, Karima Mokhtari, Marc Sanson, Emmanuel Barillot, Alain Aurias, Jean-Yves Y. Delattre, Olivier Delattre posted to example classification cgh by rdiaz on 2009-10-01 15:24:32 as along with 1 person kdpreter
	Array comparative genome hybridization for tumor classification and gene discovery in mouse models of malignant melanoma. [My Copy] Cancer research, Vol. 63, No. 17. (1 September 2003), pp. 5352-5356. by Rónán C. O'Hagan, Cameron W. Brennan, Andrew Strahs, et al.Xuegong Zhang, Karuppiah Kannan, Melissa Donovan, Craig Cauwels, Norman E. Sharpless, Wing Hung H. Wong, Lynda Chin posted to example classification cgh by rdiaz on 2009-10-01 15:21:50 as
	Detection of recurrent copy number alterations in the genome: taking among-subject heterogeneity seriously [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (23 September 2009), 308. by Oscar Rueda, Ramon D. Uriarte posted to recurrent common cnv cgh acgh by rdiaz on 2009-10-01 11:10:47 as along with 1 person frohike
	Genomic profiling distinguishes familial multiple and sporadic multiple meningiomas [My Copy] BMC Medical Genomics, Vol. 2, No. 1. (2009), 42. by Yiping Shen, Fabio Nunes, Anat S. Rachamimov, et al.Marianne James, Gayatry Mohapatra, Scott Plotkin, Rebecca Betensky, David Engler, Jennifer Roy, Vijaya Ramesh, James Gusella posted to regions instability common cnv classification chromosomal cgh acgh by rdiaz on 2009-10-01 09:26:22 as
	A Latent Class Model with Hidden Markov Dependence for Array CGH Data. [My Copy] Biometrics, Vol. 9999, No. 9999. (7 April 2009) by Stacia M. Desantis, E. Andrés Houseman, Brent A. Coull, David N. Louis, Gayatry Mohapatra, Rebecca A. Betensky posted to hmm cnv classification cgh acgh by rdiaz on 2009-09-28 17:26:48 as along with 1 person kdpreter
	Oligonucleotide Array-CGH Identifies Genomic Subgroups and Prognostic Markers for Tumor Stage Mycosis Fungoides [My Copy] J Invest Dermatol (17 September 2009) by Rocio Salgado, Octavio Servitje, Fernando Gallardo, et al.Maarten H. Vermeer, Pablo L. Ortiz-Romero, Maria B. Karpova, Marie C. Zipser, Cristina Muniesa, Maria P. Garcia-Muret, Teresa Estrach, Marta Salido, Julia Sanchez-Schmidt, Marta Herrera, Vicenc Romagosa, Javier Suela, Bibiana I. Ferreira, Juan C. Cigudosa, Carlos Barranco, Sergio Serrano, Reinhard Dummer, Cornelis P. Tensen, Francesc Sole, Ramon M. Pujol, Blanca Espinet posted to survival stability region instability genomic example common cgh acgh by rdiaz on 2009-09-28 15:19:34 as
	High Resolution Genome-Wide Analysis of Chromosomal Alterations in Burkitt's Lymphoma [My Copy] PLoS ONE, Vol. 4, No. 9. (17 September 2009), e7089. by Saloua Toujani, Philippe Dessen, Nathalie Ithzar, et al.Gisèle Danglot, Catherine Richon, Yegor Vassetzky, Thomas Robert, Vladimir Lazar, Jacques Bosq, Lydie Da Costa, Christine Pérot, Vincent Ribrag, Catherine Patte, Jöelle Wiels, Alain Bernheim posted to region recurrent mcr example common cgh by rdiaz on 2009-09-28 11:21:53 as
	Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2906-2912. by Ronglai Shen, Adam B. Olshen, Marc Ladanyi posted to integrative integration expression cnv cluster cgh by rdiaz on 2009-09-17 11:19:37 as along with 1 person dswan
	Algorithms for Calling Gains and Losses in Array CGH Data. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 556 (2009), pp. 99-116. by Pei Wang posted to review method cgh by rdiaz on 2009-09-15 17:56:27 as along with 1 person shikin
	Comparative Genomic Hybridization on BAC Arrays. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 556 (2009), pp. 7-19. by Bradley P. Coe, William W. Lockwood, Raj Chari, Wan L. Lam posted to review cgh bac by rdiaz on 2009-09-15 17:48:27 as
	Comparative genomic hybridization on spotted oligonucleotide microarrays. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 556 (2009), pp. 21-32. by Young H. Kim, Jonathan R. Pollack posted to review oligonucleotide cgh by rdiaz on 2009-09-15 17:48:07 as
	High-throughput Multiplex Sequencing to Discover Copy Number Variants in Drosophila [My Copy] Genetics, Vol. 182, No. 4. (15 June 2009), pp. genetics.109.103218-941. by Bryce Daines, Hui Wang, Yumei Li, Yi Han, Richard Gibbs, Rui Chen posted to sequencing number copy cgh by rdiaz on 2009-09-11 10:50:39 as along with 1 person operon
	A network model of a cooperative genetic landscape in brain tumors. [My Copy] JAMA : the journal of the American Medical Association, Vol. 302, No. 3. (15 July 2009), pp. 261-275. by Markus Bredel, Denise M. Scholtens, Griffith R. Harsh, et al.Claudia Bredel, James P. Chandler, Jaclyn J. Renfrow, Ajay K. Yadav, Hannes Vogel, Adrienne C. Scheck, Robert Tibshirani, Branimir I. Sikic posted to network landscape expression cnv cgh by rdiaz on 2009-09-09 12:58:51 as along with 3 people srp33 burak daforerog
	Hybridization modeling of oligonucleotide SNP arrays for accurate DNA copy number estimation. [My Copy] Nucleic acids research (7 July 2009), gkp559. by Lin Wan, Kelian Sun, Qi Ding, et al.Yuehua Cui, Ming Li, Yalu Wen, Robert C. Elston, Minping Qian, Wenjiang J. Fu posted to snp modeling cgh by rdiaz on 2009-09-09 12:56:11 as along with 2 people pkonings guhjy
	Transcriptional landscape estimation from tiling array data using a model of signal shift and drift. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 18. (15 September 2009), pp. 2341-2347. by Pierre Nicolas, Aurélie Leduc, Stéphane Robin, Simon Rasmussen, Hanne Jarmer, Philippe Bessières posted to landscape hmm cgh by rdiaz on 2009-09-07 15:41:10 as along with 1 person humburg
	Identification of significant regional genetic variations using continuous CNV values in aCGH data. [My Copy] Genomics (19 August 2009) by Ki-Yeol Y. Kim, Gui Youn Y. Lee, Jin Kim, Hei-Cheul C. Jeung, Hyun Cheol C. Chung, Sun Young Y. Rha posted to statistics region recurrent common cnv cgh anova by rdiaz on 2009-09-07 14:57:47 as along with 1 person pkonings
	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB. [My Copy] Human molecular genetics, Vol. 18, No. 23. (1 December 2009), pp. 4650-4661. by Anna C. Need, Deborah K. Attix, Jill M. McEvoy, et al.Elizabeth T. Cirulli, Kristen L. Linney, Priscilla Hunt, Dongliang Ge, Erin L. Heinzen, Jessica M. Maia, Kevin V. Shianna, Michael E. Weale, Lynn F. Cherkas, Gail Clement, Tim D. Spector, Greg Gibson, David B. Goldstein posted to snp example disease cgh association by rdiaz on 2009-09-07 11:41:51 as along with 1 person daforerog
	Copy Number Variation in Human Health, Disease, and Evolution [My Copy] Annual Review of Genomics and Human Genetics, Vol. 10, No. 1. (2009), pp. 451-481. by Feng Zhang, Wenli Gu, Matthew E. Hurles, James R. Lupski posted to review cnv cgh by rdiaz on 2009-09-03 14:01:38 as along with 2 people sf11 scmelton
	Personalized copy number and segmental duplication maps using next-generation sequencing. [My Copy] Nature genetics, Vol. 41, No. 10. (30 October 2009), pp. 1061-1067. by Can Alkan, Jeffrey M. Kidd, Tomas Marques-Bonet, et al.Gozde Aksay, Francesca Antonacci, Fereydoun Hormozdiari, Jacob O. Kitzman, Carl Baker, Maika Malig, Onur Mutlu, S. Cenk Sahinalp, Richard A. Gibbs, Evan E. Eichler posted to sequencing cnv cgh acgh by rdiaz on 2009-09-03 14:01:24 as along with 30 people and 1 group ongenetics chvlyl leemachado daed gbenson n00c bozdagd dakelley sbmontgomery eshirdel merpublic shyamsg scmelton qayub natstreet fenghezi Annab djkt nuin xingxu jamesmorris brant torfinnnome jandot pkonings danmaclean daforerog frohike rschulz gangcai Journal picks
	CGHnormaliter: an iterative strategy to enhance normalization of array CGH data with imbalanced aberrations [My Copy] BMC Genomics, Vol. 10, No. 1. (26 August 2009), 401. by Bart van Houte, Thomas Binsl, Hannes Hettling, Walter Pirovano, Jaap Heringa posted to normalization cgh acgh by rdiaz on 2009-09-03 14:00:27 as
	Analysis of Array-CGH Data Using the R and Bioconductor Software Suite. [My Copy] Comparative and functional genomics (2009) by Winfried A. Hofmann, Anja Weigmann, Marcel Tauscher, et al.Britta Skawran, Tim Focken, Reena Buurman, Luzie U. Wingen, Brigitte Schlegelberger, Doris Steinemann posted to software region recurrent r common cgh bioconductor by rdiaz on 2009-09-02 10:02:28 as along with 3 people and 1 group giovenko shikin jandot Journal picks
	Cancer gene discovery in mouse and man [My Copy] Biochimica et Biophysica Acta (BBA) - Reviews on Cancer (12 March 2009) by Jenny Mattison, Louise van der Weyden, Tim Hubbard, David J. Adams posted to rjacgh review examples cgh cancer by rdiaz on 2009-08-21 17:15:10 as along with 1 person timhubbard
	Aneuploidy prediction and tumor classification with heterogeneous hidden conditional random fields [My Copy] Bioinformatics, Vol. 25, No. 10. (15 May 2009), pp. 1307-1313. by Zafer Barutcuoglu, Edoardo M. Airoldi, Vanessa Dumeaux, Robert E. Schapire, Olga G. Troyanskaya posted to recurrent markov hmm field disease cgh association by rdiaz on 2009-08-21 15:34:00 as along with 3 people jfr pkonings Zephyrus
	RJaCGH: Bayesian analysis of aCGH arrays for detecting copy number changes and recurrent regions [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1959-1960. by Oscar M. Rueda, Ramon Diaz-Uriarte posted to rjacgh hmm cgh bayesian by rdiaz on 2009-08-21 11:52:04 as along with 2 people and 1 group Stew nuin Bioinformatics - CRUK
	MicroRNA Expression, Chromosomal Alterations, and Immunoglobulin Variable Heavy Chain Hypermutations in Mantle Cell Lymphomas [My Copy] Cancer Res, Vol. 69, No. 17. (1 September 2009), pp. 7071-7078. by Alba Navarro, Silvia Bea, Veronica Fernandez, et al.Miriam Prieto, Itziar Salaverria, Pedro Jares, Elena Hartmann, Anna Mozos, Armando Lopez-Guillermo, Neus Villamor, Dolors Colomer, Xavier Puig, German Ott, Francesc Sole, Sergi Serrano, Andreas Rosenwald, Elias Campo, Luis Hernandez posted to mirna microrna cgh by rdiaz on 2009-08-20 10:27:09 as along with 1 person wmatsui
	Hidden Markov models for the assessment of chromosomal alterations using high-throughput SNP arrays. [My Copy] The annals of applied statistics, Vol. 2, No. 2. (1 June 2008), pp. 687-713. by Robert B. Scharpf, Giovanni Parmigiani, Jonathan Pevsner, Ingo Ruczinski posted to snp hmm cnv cgh by rdiaz on 2009-08-18 19:35:04 as
	Integrating sequencing technologies in personal genomics: optimal low cost reconstruction of structural variants. [My Copy] PLoS computational biology, Vol. 5, No. 7. (10 July 2009), e1000432. by Jiang Du, Robert D. Bjornson, Zhengdong D. Zhang, Yong Kong, Michael Snyder, Mark B. Gerstein posted to sequencing cnv cgh by rdiaz on 2009-08-18 17:38:11 as along with 5 people operon nuin natstreet dakelley guhjy
	A continuous-index hidden Markov jump process for modeling DNA copy number data [My Copy] Biostat, Vol. 10, No. 4. (1 October 2009), pp. 773-778. by Susann Stjernqvist, Tobias Ryden posted to hmm cgh by rdiaz on 2009-08-18 17:01:44 as along with 1 person djkt
	Oncogenic Activating Mutations Are Associated with Local Copy Gain [My Copy] Molecular Cancer Research (11 August 2009) by Barmak Modrek, Lin Ge, Ajay Pandita, et al.Eva Lin, Sankar Mohan, Peng Yue, Steve Guerrero, William M. Lin, Thinh Pham, Zora Modrusan, Somasekar Seshagiri, Howard M. Stern, Paul Waring, Levi A. Garraway, John Chant, David Stokoe, Guy Cavet posted to teaching phenotype examples cgh cancer by rdiaz on 2009-08-18 13:55:19 as
	SnoopCGH: software for visualizing comparative genomic hybridization data [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2732-2733. by Jacob Almagro-Garcia, Magnus Manske, Celine Carret, et al.Susana Campino, Sarah Auburn, Bronwyn L. MacInnis, Gareth Maslen, Arnab Pain, Christopher I. Newbold, Dominic P. Kwiatkowski, Taane G. Clark posted to software cnv cgh by rdiaz on 2009-08-18 11:48:59 as along with 3 people and 1 group nuin jandot pkonings Journal picks
	Copy number variations and cancer. [My Copy] Genome medicine, Vol. 1, No. 6. (2009) by A. Shlien, D. Malkin posted to cancer cgh cnv review by rdiaz on 2009-07-23 15:50:19 as
	Population Analysis of Large Copy Number Variants and Hotspots of Human Genetic Disease [My Copy] Vol. 84, No. 2. (13 February 2009), pp. 148-161. by Andy Itsara, Gregory M. Cooper, Carl Baker, et al.Santhosh Girirajan, Jun Li, Devin Absher, Ronald M. Krauss, Richard M. Myers, Paul M. Ridker, Daniel I. Chasman, Heather Mefford, Phyllis Ying, Deborah A. Nickerson, Evan E. Eichler posted to cgh hotspot population variation by rdiaz on 2009-07-23 15:21:54 as
	Unsupervised segmentation of continuous genomic data. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 11. (1 June 2007), pp. 1424-1426. by Nathan Day, Andrew Hemmaplardh, Robert E. Thurman, John A. Stamatoyannopoulos, William S. Noble posted to cgh segmentation by rdiaz on 2009-07-23 15:10:47 as along with 4 people and 3 groups polivares Eroslavochka waszak ealloza JLab BergmanLab BioinfoCIPF
	PennCNV: An integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data [My Copy] Genome Research, Vol. 17, No. 11. (5 November 2007), pp. 1665-1674. by Kai Wang, Mingyao Li, Dexter Hadley, et al.Rui Liu, Joseph Glessner, Struan F. A. Grant, Hakon Hakonarson, Maja Bucan posted to acgh cgh penncnv snp by rdiaz on 2009-07-20 18:01:49 as along with 2 people vplagnol jfr
	Integrated analysis of DNA copy number and gene expression microarray data using gene sets [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (29 June 2009), 203. by Renee Menezes, Marten Boetzer, Melle Sieswerda, Gert J. van Ommen, Judith Boer posted to cgh cnv expression integration by rdiaz on 2009-07-20 14:30:54 as along with 8 people and 1 group daed zufar ptrobajo dswan guhjy lwaldron shikin barriot Bioinformatics
	A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis [My Copy] Biostat, Vol. 10, No. 3. (1 July 2009), pp. 515-534. by Daniela M. Witten, Robert Tibshirani, Trevor Hastie posted to cgh cnv expression penalization by rdiaz on 2009-06-29 18:08:15 as along with 4 people sotacam Gorzomagnificent engelhardt guhjy
	A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2149-2156. by Henrik Bengtsson, Pratyaksha Wirapati, Terence P. Speed posted to affymetrix cgh normalization snp by rdiaz on 2009-06-29 17:29:02 as along with 5 people shikin djkt pkonings daforerog neils
	A Bayesian segmentation approach to ascertain copy number variations at the population level. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 13. (1 July 2009), pp. 1669-1679. by Long Yang, Hugh A. A. Chipman, Shelley B. B. Bull, Laurent Briollais, Kesheng Wang posted to bayesian cgh cnv common hmm recurrent by rdiaz on 2009-06-29 17:27:18 as along with 2 people daed guhjy
	Comparison of comparative genomic hybridization technologies across microarray platforms. [My Copy] Journal of biomolecular techniques : JBT, Vol. 20, No. 2. (April 2009), pp. 135-151. by Susan D. Hester, Laura Reid, Norma Nowak, et al.Wendell D. Jones, Joel S. Parker, Kevin Knudtson, William Ward, Jay Tiesman, Nancy D. Denslow posted to cgh comparison platform review technology by rdiaz on 2009-06-29 17:22:06 as along with 2 people shikin idonaldson
	Inferring progression models for CGH data [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2208-2215. by Jun Liu, Nirmalya Bandyopadhyay, Sanjay Ranka, M. Baudis, Tamer Kahveci posted to tree progression oncogenetic model cnv cgh by rdiaz on 2009-06-29 17:13:31 as along with 5 people davfre sameersoi pkonings nuin bgordski
	Computational Methods for the Analysis of Array Comparative Genomic Hybridization. [My Copy] Cancer informatics, Vol. 2 (2006), pp. 48-58. by Raj Chari, William W W. Lockwood, Wan L L. Lam posted to cgh method review by rdiaz on 2009-04-28 15:03:57 as along with 1 person jfr
	The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells. [My Copy] Nature genetics (8 March 2009) by Patrick Cahan, Yedda Li, Masayo Izumi, Timothy A A. Graubert posted to cgh cnv expression integration by rdiaz on 2009-04-23 15:09:10 as along with 5 people psique shikin fenghezi djkt jdbowes
	Identification of potential driver genes in human liver carcinoma by genomewide screening. [My Copy] Cancer research, Vol. 69, No. 9. (1 May 2009), pp. 4059-4066. by Hyun Goo G. Woo, Eun Sung S. Park, Ju-Seog S. Lee, et al.Yun-Han H. Lee, Tsuyoshi Ishikawa, Yoon Jun J. Kim, Snorri S. Thorgeirsson posted to cgh cnv expression integration by rdiaz on 2009-04-17 17:30:18 as
	How best to use CGH arrays in the clinical setting. [My Copy] Genetics in medicine : official journal of the American College of Medical Genetics (2 April 2009) by Robert A. Saul, John B. Moeschler posted to cgh clinical by rdiaz on 2009-04-14 11:33:44 as
	Genetic regulators of large-scale transcriptional signatures in cancer. [My Copy] Nature genetics, Vol. 38, No. 4. (05 April 2006), pp. 421-430. by Adam S. Adler, Meihong Lin, Hugo Horlings, Dimitry S. Nuyten, Marc J. van de Vijver, Howard Y. Chang posted to acgh cgh expression integration by rdiaz on 2009-04-02 14:26:05 as along with 6 people huiminC jfr tuck ccots Ao_Li2007 oelemento
	On the analysis of copy-number variations in genome-wide association studies: a translation of the family-based association test. [My Copy] Genetic epidemiology, Vol. 32, No. 3. (April 2008), pp. 273-284. by I. Ionita-Laza, G. H. Perry, B. A. Raby, et al.B. Klanderman, C. Lee, N. M. Laird, S. T. Weiss, C. Lange posted to cgh cnv gwas wgas by rdiaz on 2009-03-27 11:02:58 as along with 3 people maren vplagnol guhjy
	Microarray-Based Comparative Genomic Hybridization Using Sex-Matched Reference DNA Provides Greater Sensitivity for Detection of Sex Chromosome Imbalances than Array-Comparative Genomic Hybridization with Sex-Mismatched Reference DNA [My Copy] J Mol Diagn (26 March 2009), jmoldx.2009.080064. by Svetlana A. Yatsenko, Chad A. Shaw, Zhishuo Ou, et al.Amber N. Pursley, Ankita Patel, Weimin Bi, Sau W. Cheung, James R. Lupski, Craig A. Chinault, Arthur L. Beaudet posted to cgh chromosome design sex by rdiaz on 2009-03-27 10:52:30 as
	Spatial smoothing and hot spot detection for CGH data using the fused lasso. [My Copy] Biostatistics (Oxford, England), Vol. 9, No. 1. (January 2008), pp. 18-29. by Robert Tibshirani, Pei Wang posted to cgh lasso smooth by rdiaz on 2009-03-26 16:36:49 as along with 2 people shikin debasis

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web-based	1
whistleblowing	1
window	1
xp	1

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