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reidy's library [17 articles]

Recent papers added to reidy's library.
  • Non-additivity in protein-DNA binding.
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2254-2263.
    by RA O'Flanagan, G Paillard, R Lavery, AM Sengupta
    posted to binding by reidy on 2006-09-07 10:13:45 as ** along with 2 people and 1 group nklee blobbybirdman UH - Computational Biology
  • Computational identification of transcriptional regulatory elements in DNA sequence
    Nucl. Acids Res., Vol. 34, No. 12. (19 July 2006), pp. 3585-3598.
    by Debraj Guhathakurta
    posted to binding by reidy on 2006-09-07 09:58:12 as ** along with 8 people and 1 group xili03 tmmurali jfr johncumbers giovanni cabbagezs ankur_iitg vietanh0 GeschwindLab
  • Predicting co-complexed protein pairs using genomic and proteomic data integration.
    BMC Bioinformatics, Vol. 5 (16 April 2004)
    by LV Zhang, SL Wong, OD King, FP Roth
    posted to integrative interaction by reidy on 2006-09-01 10:54:57 as ** along with 3 people and 1 group carlk lfriedl nedwards kdl
  • A data integration methodology for systems biology.
    Proc Natl Acad Sci U S A (21 November 2005)
    by Daehee Hwang, Alistair G G Rust, Stephen Ramsey, Jennifer J J Smith, Deena M M Leslie, Andrea D D Weston, Pedro de Atauri, John D D Aitchison, Leroy Hood, Andrew F F Siegel, Hamid Bolouri
    posted to integrative by reidy on 2006-09-01 10:51:06 as ** along with 17 people and 3 groups brian tmmurali dragonrez okarsligil jfr lfriedl Schmidtc eweaver wnpx biosv Sharpshoot noano mbeautru grahamc GeeSharpMinor nedwards athleem kdl Bioinformatics JJJ
  • Bridging structural biology and genomics: assessing protein interaction data with known complexes
    Trends in Genetics, Vol. 18, No. 10. (1 October 2002), pp. 529-536.
    by Aled M Edwards, Bart Kus, Ronald Jansen, Dov Greenbaum, Jack Greenblatt, Mark Gerstein
    posted to interaction by reidy on 2006-09-01 10:49:47 as ** along with 4 people and 1 group lfriedl wnpx ruvido wilbur kdl
  • Combining biological networks to predict genetic interactions.
    Proc Natl Acad Sci U S A, Vol. 101, No. 44. (2 November 2004), pp. 15682-15687.
    by SL Wong, LV Zhang, AH Tong, Z Li, DS Goldberg, OD King, G Lesage, M Vidal, B Andrews, H Bussey, C Boone, FP Roth
    posted to integrative by reidy on 2006-09-01 10:47:23 as *** along with 7 people and 3 groups ksiek dbk lfriedl balajis wnpx eukfn patrycja_missiuro streptomyces dbk-lab kdl
  • A probabilistic functional network of yeast genes.
    Science, Vol. 306, No. 5701. (26 November 2004), pp. 1555-1558.
    by I Lee, SV Date, AT Adai, EM Marcotte
    posted to integrative by reidy on 2006-09-01 10:44:54 as *** along with 14 people and 3 groups balicea kintoki roys ellakat irenas lfriedl ccots balajis nuke2005 eweaver opheliav nickluscombe dbgrant svdate dbk-lab kdl EBI-regulation
  • Deciphering principles of transcription regulation in eukaryotic genomes
    Mol Syst Biol, Vol. 2, No. 1. (11 April 2006), pp. msb4100054-E1-msb4100054-E10.
    by Dat H Nguyen, Patrik D'Haeseleer
    posted to regulation by reidy on 2006-08-31 17:14:08 as *** along with 5 people and 2 groups isimpson okarsligil pau koller mikaelhuss Bioinformatics RNAtransport
  • P-Match: transcription factor binding site search by combining patterns and weight matrices.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by DS Chekmenev, C Haid, AE Kel
    posted to binding by reidy on 2006-08-31 17:05:37 as ** along with 1 person tuck
  • TRANSFAC(R) and its module TRANSCompel(R): transcriptional gene regulation in eukaryotes.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by V Matys, OV Kel-Margoulis, E Fricke, I Liebich, S Land, A Barre-Dirrie, I Reuter, D Chekmenev, M Krull, K Hornischer, N Voss, P Stegmaier, B Lewicki-Potapov, H Saxel, AE Kel, E Wingender
    posted to binding by reidy on 2006-08-31 17:04:36 as ** along with 3 people jyuh troels_marstrand frohike
  • MATCH: A tool for searching transcription factor binding sites in DNA sequences.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3576-3579.
    by AE Kel, E Gössling, I Reuter, E Cheremushkin, OV Kel-Margoulis, E Wingender
    posted to binding by reidy on 2006-08-31 17:04:00 as *** along with 6 people setar aprasad nklee danish_punter maximilianh emptyhb
  • Integrating 'omic' information: a bridge between genomics and systems biology.
    Trends Genet, Vol. 19, No. 10. (October 2003), pp. 551-560.
    by H Ge, AJ Walhout, M Vidal
    posted to integrative by reidy on 2006-08-31 17:02:53 as ** along with 5 people and 1 group sanchezbuelna lfriedl wnpx biosv grahamc kdl
  • Genome-wide discovery of transcriptional modules from DNA sequence and gene expression.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by E Segal, R Yelensky, D Koller
    posted to integrative by reidy on 2006-08-31 17:02:07 as ** along with 2 people karfunkel danish_punter
  • Three habits of highly effective signaling pathways: principles of transcriptional control by developmental cell signaling.
    Genes Dev, Vol. 16, No. 10. (15 May 2002), pp. 1167-1181.
    by S Barolo, JW Posakony
    posted to pathways signaling by reidy on 2006-08-31 17:00:07 as **
  • Sensors and signals: a coactivator/corepressor/epigenetic code for integrating signal-dependent programs of transcriptional response
    Genes Dev., Vol. 20, No. 11. (1 June 2006), pp. 1405-1428.
    by Michael G Rosenfeld, Victoria V Lunyak, Christopher K Glass
    posted to complexes pathways by reidy on 2006-08-31 16:58:18 as **
  • Integrated Assessment and Prediction of Transcription Factor Binding
    PLoS Computational Biology, Vol. 2, No. 6. (1 June 2006), e70.
    by Andreas Beyer, Christopher Workman, Jens Hollunder, Dörte Radke, Ulrich Möller, Thomas Wilhelm, Trey Ideker
    posted to integrative by reidy on 2006-08-31 16:56:53 as *** along with 6 people and 1 group jfr balajis wnpx emilyhare samal Ao_Li2007 EisenLab
  • Transcription Factor Map Alignment of Promoter Regions
    PLoS Computational Biology, Vol. 2, No. 5. (1 May 2006), e49.
    by Enrique Blanco, Xavier Messeguer, Temple F Smith, Roderic Guigó
    posted to binding by reidy on 2006-08-31 16:55:18 as read along with 2 people Garamonfok GustavoLacerda
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