SimBoolNet - A Cytoscape Plugin for Dynamic Simulation of Signaling Networks. Export

@article{citeulike:6079761, abstract = {SUMMARY: SimBoolNet is an open source Cytoscape plugin that simulates the dynamics of signaling transduction using Boolean networks. Given a user-specified level of stimulation to signal receptors, SimBoolNet simulates the response of downstream molecules and visualizes with animation and records the dynamic changes of the network. It can be used to generate hypotheses and facilitate experimental studies about causal relations and crosstalk among cellular signaling pathways. AVAILABILITY: SimBoolNet package (with manual) is freely available at http://www.ncbi.nlm.nih.gov/CBBresearch/Przytycka/SimBoolNet CONTACT: przytyck@ncbi.nlm.nih.gov or zhengj@ncbi.nlm.nih.gov.}, author = {Zheng, Jie and Zhang, David and Przytycki, Pawel F. and Zielinski, Rafal and Capala, Jacek and Przytycka, Teresa M.}, citeulike-article-id = {6079761}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bioinformatics/btp617}, citeulike-linkout-1 = {http://bioinformatics.oxfordjournals.org/content/btp617v1/.abstract}, citeulike-linkout-2 = {http://bioinformatics.oxfordjournals.org/content/btp617v1/.full.pdf}, citeulike-linkout-3 = {http://view.ncbi.nlm.nih.gov/pubmed/19887508}, citeulike-linkout-4 = {http://www.hubmed.org/display.cgi?uids=19887508}, day = {3}, doi = {10.1093/bioinformatics/btp617}, issn = {1367-4811}, journal = {Bioinformatics (Oxford, England)}, keywords = {bioinformatics, cytoscape, networks, signaling, tool}, month = {November}, pages = {btp617+}, posted-at = {2009-11-06 02:02:43}, priority = {2}, title = {SimBoolNet - A Cytoscape Plugin for Dynamic Simulation of Signaling Networks.}, url = {http://dx.doi.org/10.1093/bioinformatics/btp617}, year = {2009} }

TY - JOUR ID - citeulike:6079761 L3 - citeulike-article-id:6079761 N2 - SUMMARY: SimBoolNet is an open source Cytoscape plugin that simulates the dynamics of signaling transduction using Boolean networks. Given a user-specified level of stimulation to signal receptors, SimBoolNet simulates the response of downstream molecules and visualizes with animation and records the dynamic changes of the network. It can be used to generate hypotheses and facilitate experimental studies about causal relations and crosstalk among cellular signaling pathways. AVAILABILITY: SimBoolNet package (with manual) is freely available at http://www.ncbi.nlm.nih.gov/CBBresearch/Przytycka/SimBoolNet CONTACT: przytyck@ncbi.nlm.nih.gov or zhengj@ncbi.nlm.nih.gov. JF - Bioinformatics (Oxford, England) SN - 1367-4811 TI - SimBoolNet - A Cytoscape Plugin for Dynamic Simulation of Signaling Networks. SP - btp617 KW - bioinformatics KW - cytoscape KW - networks KW - signaling KW - tool AU - Zheng, Jie AU - Zhang, David AU - Przytycki, Pawel AU - Zielinski, Rafal AU - Capala, Jacek AU - Przytycka, Teresa PY - 2009/11/03/ UR - http://dx.doi.org/10.1093/bioinformatics/btp617 ER -