richardbickerton's library 78 articles Export

	The road less traveled: modulating signal transduction enzymes by inhibiting their protein–protein interactions [My Copy] Current Opinion in Chemical Biology, Vol. 13, No. 3. (22 June 2009), pp. 284-290. by Michelle R. Arkin, Adrian Whitty posted to signal_transduction protein_protein_interactions druggability by richardbickerton on 2009-09-03 15:10:59 as along with 1 person higueruelo
	Predicting the multi-modal binding propensity of small molecules: towards an understanding of drug promiscuity [My Copy] Mol. BioSyst., Vol. 5, No. 8. (2009), pp. 844-853. by Keunwan Park, Soyoung Lee, Hee-Sung Ahn, Dongsup Kim posted to polypharmacology by richardbickerton on 2009-09-01 17:28:25 as
	Prediction of conditional gene essentiality through graph theoretical analysis of genome-wide functional linkages [My Copy] Mol. BioSyst. (2009) by P. Manimaran, Shubhada R. Hegde, Shekhar C. Mande posted to essentiality by richardbickerton on 2009-08-28 14:36:03 as
	CREDO: A Protein–Ligand Interaction Database for Drug Discovery [My Copy] Chemical Biology & Drug Design, Vol. 73, No. 2. (February 2009), pp. 157-167. by Adrian Schreyer, Tom Blundell posted to chemistry_database cheminformatics by richardbickerton on 2009-08-26 11:59:39 as along with 6 people mijam pansapiens bicko nanonan massivemayhem higueruelo
	Drug Discovery and Natural Products: End of an Era or an Endless Frontier? [My Copy] Science, Vol. 325, No. 5937. (10 July 2009), pp. 161-165. by Jesse W. H. Li, John C. Vederas posted to natural_products by richardbickerton on 2009-08-13 15:51:10 as along with 5 people Yanno guhjy reyez TRHvidsten flbarroso
	Carrier-mediated cellular uptake of pharmaceutical drugs: an exception or the rule? [My Copy] Nature reviews. Drug discovery, Vol. 7, No. 3. (March 2008), pp. 205-220. by Paul D. Dobson, Douglas B. Kell posted to drug_uptake by richardbickerton on 2009-08-13 15:49:28 as along with 5 people pauldobson dullhunk psique dbk jmuhlich
	Quantifying biogenic bias in screening libraries. [My Copy] Nature chemical biology, Vol. 5, No. 7. (31 May 2009), pp. 479-483. by Jérôme Hert, John J. Irwin, Christian Laggner, Michael J. Keiser, Brian K. Shoichet posted to screening chemogenomics by richardbickerton on 2009-08-12 09:56:52 as along with 1 person reyez
	Drug discovery chemistry: a primer for the non-specialist. [My Copy] Drug discovery today, Vol. 14, No. 15-16. (2 August 2009), pp. 731-744. by Allan M. Jordan, Stephen D. Roughley posted to medicinal_chemistry by richardbickerton on 2009-08-05 11:22:11 as along with 4 people and 1 group pmung zimbo1 jerome jmccammon McCammon
	A common mechanism of cellular death induced by bactericidal antibiotics. [My Copy] Cell, Vol. 130, No. 5. (7 September 2007), pp. 797-810. by Michael A. Kohanski, Daniel J. Dwyer, Boris Hayete, Carolyn A. Lawrence, James J. Collins posted to antimicrobials by richardbickerton on 2009-08-05 09:27:08 as along with 3 people gwenknight cambray madhadron
	Microbial genome data resources [My Copy] Current Opinion in Biotechnology, Vol. 18, No. 3. (June 2007), pp. 267-272. by V. Markowitz posted to antimicrobials genomics by richardbickerton on 2009-08-04 12:02:31 as along with 2 people treangen druvus
	Genome and proteome annotation: organization, interpretation and integration [My Copy] Journal of The Royal Society Interface, Vol. 6, No. 31. (6 February 2009), pp. 129-147. by Gabrielle A. Reeves, David Talavera, Janet M. Thornton posted to bioinformatics genomics by richardbickerton on 2009-07-30 18:53:11 as along with 6 people operon bertelsen Thaverkamp druvus dullhunk guhjy
	Optimizing Fragment and Scaffold Docking by Use of Molecular Interaction Fingerprints [My Copy] Journal of Chemical Information and Modeling, Vol. 47, No. 1. (1 January 2007), pp. 195-207. by Gilles Marcou, Didier Rognan posted to cheminformatics docking by richardbickerton on 2009-07-30 18:50:13 as along with 8 people RebeccaHamer klexa nanonan BragilMassoud peprovy schlauchi massivemayhem sithmein
	A network view of disease and compound screening. [My Copy] Nature reviews. Drug discovery, Vol. 8, No. 4. (April 2009), pp. 286-295. by Eric E. Schadt, Stephen H. Friend, David A. Shaywitz posted to network by richardbickerton on 2009-07-30 18:49:21 as along with 11 people jbesnard abhishek_tiwari pablocarb sameersoi mingzhi oelemento ptrobajo phoenixzxl reyez guhjy sschurer
	The impact of cellular networks on disease comorbidity. [My Copy] Molecular systems biology, Vol. 5 (7 April 2009) by Juyong Park, Deok-Sun S. Lee, Nicholas A. Christakis, Albert-László L. Barabási posted to comorbidity networks by richardbickerton on 2009-07-30 17:20:16 as along with 1 person abhishek_tiwari
	Empirical antibacterial drug discovery—Foundation in natural products [My Copy] Biochemical Pharmacology, Vol. 71, No. 7. (30 March 2006), pp. 1006-1015. by S. Singh, J. Barrett posted to antimicrobials natural_products by richardbickerton on 2009-07-30 16:27:40 as
	Quantitative assessment of the expanding complementarity between public and commercial databases of bioactive compounds [My Copy] Journal of Cheminformatics, Vol. 1, No. 1. (2009), 10. by Christopher Southan, Peter Varkonyi, Sorel Muresan posted to chemogenomics by richardbickerton on 2009-07-30 15:47:39 as along with 3 people nicklynch sorelmuresan dullhunk
	Overlapping, nonidentical binding sites of different classes of nonpeptide antagonists for the human gonadotropin-releasing hormone receptor. [My Copy] Journal of medicinal chemistry, Vol. 49, No. 2. (26 January 2006), pp. 637-647. by Stephen F. Betz, Greg J. Reinhart, Francisco M. Lio, Chen Chen, R. Scott Struthers posted to ontology_illustration by richardbickerton on 2009-07-30 15:09:46 as
	Inferring Cellular Networks Using Probabilistic Graphical Models [My Copy] Science, Vol. 303, No. 5659. (6 February 2004), pp. 799-805. by Nir Friedman posted to network_inference networks by richardbickerton on 2009-07-30 15:06:41 as along with 24 people and 2 groups antonkratz jxl phoenixzxl abhishek_tiwari ruichu ggallone bertelsen ldfu ujh lfriedl opheliav ryang wnpx nirfriedman neveaire koller helsley dimatura edwardmorrissey vietanh0 Yumyai srp33 saman_vp jo_davies Jarman Lab kdl
	Inference in Bayesian networks [My Copy] Nat Biotech, Vol. 24, No. 1. (01 January 2006), pp. 51-53. by Chris J. Needham, James R. Bradford, Andrew J. Bulpitt, David R. Westhead posted to network_inference networks by richardbickerton on 2009-07-30 15:05:59 as along with 13 people and 3 groups jxl abhishek_tiwari Yanno jrw garyfeng okarsligil Borelli ddahlem lujiec kozlak jo_davies quianominorleo Pragmatist ReadingLab Bioinformatics ThinkBridge
	Shelling the Voronoi interface of protein-protein complexes reveals patterns of residue conservation, dynamics, and composition [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 3. (23 January 2009), pp. 677-692. by Benjamin Bouvier, Raik Grünberg, Michael Nilges, Frédéric Cazals posted to binding_pockets protein_protein_interactions by richardbickerton on 2009-07-30 15:05:00 as along with 2 people and 1 group sobolevnrm higueruelo baker-group
	Navigating structure-activity landscapes. [My Copy] Drug discovery today, Vol. 14, No. 13-14. (04 July 2009), pp. 698-705. by Jürgen Bajorath, Lisa Peltason, Mathias Wawer, Rajarshi Guha, Michael S. Lajiness, John H. Van Drie posted to sar_landscapes by richardbickerton on 2009-07-30 15:00:01 as along with 5 people jbesnard Yanno abhishek_tiwari jerome sschurer
	Regulatory Roles of the N-Terminal Domain Based on Crystal Structures of Human Pyruvate Dehydrogenase Kinase 2 Containing Physiological and Synthetic Ligands†,‡ [My Copy] Biochemistry, Vol. 45, No. 2. (1 January 2006), pp. 402-415. by Thorsten R. Knoechel, Alec D. Tucker, Colin M. Robinson, et al.Chris Phillips, Wendy Taylor, Peter J. Bungay, Shane A. Kasten, Thomas E. Roche, David G. Brown posted to ontology_illustration by richardbickerton on 2009-07-30 14:48:48 as
	VASCo: computation and visualization of annotated protein surface contacts [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 32. by Georg Steinkellner, Robert Rader, Gerhard Thallinger, Christoph Kratky, Karl Gruber posted to binding_pockets by richardbickerton on 2009-07-30 14:48:01 as along with 5 people superpyrin higueruelo kshameer neils svozil
	Molecular optimization using computational multi-objective methods. [My Copy] Current opinion in drug discovery & development, Vol. 10, No. 3. (May 2007), pp. 316-324. by C. A. Nicolaou, N. Brown, C. S. Pattichis posted to multiobjective by richardbickerton on 2009-07-30 13:34:28 as along with 1 person flbarroso
	Ligand binding and allostery can emerge simultaneously. [My Copy] Protein science : a publication of the Protein Society, Vol. 16, No. 5. (1 May 2007), pp. 929-937. by J. Liang, J. R. Kim, J. T. Boock, T. J. Mansell, M. Ostermeier posted to allostery binding_pockets by richardbickerton on 2009-07-30 13:33:55 as along with 1 person cactus
	The limits of protein sequence comparison? [My Copy] Current opinion in structural biology, Vol. 15, No. 3. (June 2005), pp. 254-260. by William R. Pearson, Michael L. Sierk posted to bioinformatics by richardbickerton on 2009-07-30 12:41:45 as along with 3 people and 1 group svozil yylin BioNica Bioinformatics
	Ultrafast shape recognition: Evaluating a new ligand-based virtual screening technology [My Copy] Journal of Molecular Graphics and Modelling, Vol. 27, No. 7. (14 April 2009), pp. 836-845. by Pedro J. Ballester, Paul W. Finn, W. Graham Richards posted to cheminformatics virtual_screening by richardbickerton on 2009-07-30 12:41:12 as along with 2 people massivemayhem reyez
	Protein structure similarity from Principle Component Correlation analysis. [My Copy] BMC bioinformatics, Vol. 7, No. 1. (25 January 2006) by X. Zhou, J. Chou, S. T. Wong posted to structure_comparison by richardbickerton on 2009-07-30 12:39:37 as along with 1 person bicko
	Structural Diversity of Organic Chemistry. A Scaffold Analysis of the CAS Registry [My Copy] The Journal of Organic Chemistry, Vol. 73, No. 12. (1 June 2008), pp. 4443-4451. by Alan H. Lipkus, Qiong Yuan, Karen A. Lucas, et al.Susan A. Funk, William F. Bartelt, Roger J. Schenck, Anthony J. Trippe posted to cheminformatics by richardbickerton on 2009-07-30 12:34:54 as along with 1 person abhishek_tiwari
	Essential genes on metabolic maps. [My Copy] Current opinion in biotechnology, Vol. 17, No. 5. (13 October 2006), pp. 448-456. by S. Gerdes, R. Edwards, M. Kubal, M. Fonstein, R. Stevens, A. Osterman posted to essentiality metabolomics pathways target_prioritization by richardbickerton on 2009-07-30 12:34:22 as along with 2 people aswin westoll
	Genomic analysis reveals that Pseudomonas aeruginosa virulence is combinatorial. [My Copy] Genome biology, Vol. 7, No. 10. (12 October 2006), R90. by D. G. Lee, J. M. Urbach, G. Wu, et al.N. T. Liberati, R. L. Feinbaum, S. Miyata, L. T. Diggins, J. He, M. Saucier, E. Déziel, L. Friedman, L. Li, G. Grills, K. Montgomery, R. Kucherlapati, L. G. Rahme, F. M. Ausubel posted to pseudomas_aeruginosa target_prioritization by richardbickerton on 2009-07-30 12:33:30 as along with 3 people and 1 group thegoose2 tharris bakakaj C. elegans / WormBase
	Illuminating drug discovery with biological pathways. [My Copy] FEBS letters, Vol. 579, No. 8. (21 March 2005), pp. 1872-1877. by Gordana Apic, Tijana Ignjatovic, Scott Boyer, Robert B. Russell posted to pathways by richardbickerton on 2009-07-30 12:32:42 as along with 7 people ubcg08l kuhn Borelli chad_davis wnpx mikaelhuss renatomilani
	Identifying and Characterizing Binding Sites and Assessing Druggability [My Copy] Journal of Chemical Information and Modeling, Vol. 49, No. 2. (23 February 2009), pp. 377-389. by Thomas A. Halgren posted to binding_pockets druggability druggable_genome by richardbickerton on 2009-07-30 12:31:59 as along with 4 people and 1 group nickolay TonyIvetac carlosjavierna timg McCammon
	From magic bullets to designed multiple ligands. [My Copy] Drug discovery today, Vol. 9, No. 15. (1 August 2004), pp. 641-651. by R. Morphy, C. Kay, Z. Rankovic posted to polypharmacology by richardbickerton on 2009-07-30 12:29:32 as
	Turning from monogamy to strategic promiscuity [My Copy] Drug Discovery Today, Vol. 9, No. 17. (September 2004), pp. 736-737. by H. Stark posted to polypharmacology by richardbickerton on 2009-07-30 12:29:03 as
	Multiobjective Optimization in Bioinformatics and Computational Biology [My Copy] IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 4, No. 2. (April 2007), pp. 279-292. by Julia Handl, Douglas B. Kell, Joshua Knowles posted to multiobjective by richardbickerton on 2009-07-30 12:27:57 as along with 6 people biblio24 rodrigofaccioli ilyashl nicholasflann bigbossman alanrw
	De novo drug design using multiobjective evolutionary graphs. [My Copy] Journal of chemical information and modeling, Vol. 49, No. 2. (February 2009), pp. 295-307. by C. A. Nicolaou, J. Apostolakis, C. S. Pattichis posted to multiobjective by richardbickerton on 2009-07-30 12:27:22 as
	‘Metabolite-likeness’ as a criterion in the design and selection of pharmaceutical drug libraries [My Copy] Drug Discovery Today, Vol. 14, No. 1-2. (28 January 2009), pp. 31-40. by P. Dobson, Y. Patel, D. Kell posted to druglikeness metabolomics by richardbickerton on 2009-07-30 11:58:40 as along with 9 people mingzhi massivemayhem vpenelle jmuhlich lptolik pauldobson sschurer egonw dullhunk
	The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration [My Copy] Nature Biotechnology, Vol. 25, No. 11. (07 November 2007), pp. 1251-1255. by Barry Smith, Michael Ashburner, Cornelius Rosse, et al.Jonathan Bard, William Bug, Werner Ceusters, Louis J. Goldberg, Karen Eilbeck, Amelia Ireland, Christopher J. Mungall, Neocles Leontis, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H. Scheuermann, Nigam Shah, Patricia L. Whetzel, Suzanna Lewis posted to ontologies by richardbickerton on 2009-07-29 14:51:42 as along with 24 people and 1 group vkwn beanformer druvus mqbphcw3 CameronNeylon nicklynch Scis0000002 jorisslob allysonlister tmmurali jfr dullhunk jandot cjeans leechuck sgoetz PunkRock sobolevnrm lenov AlexanderPico dansullivanblk dagmar marck fgibson baker-group
	Chemical Substructure Search in SQL [My Copy] Journal of Chemical Information and Modeling, Vol. 49, No. 1. (26 January 2009), pp. 22-27. by Adel Golovin, Kim Henrick posted to cheminformatics by richardbickerton on 2009-07-29 14:51:01 as along with 5 people pauldobson higueruelo dullhunk zimbo1 sschurer
	Mechanisms of drug combinations: interaction and network perspectives [My Copy] Nat Rev Drug Discov, Vol. 8, No. 2. (01 February 2009), pp. 111-128. by Jia Jia, Feng Zhu, Xiaohua Ma, Zhiwei W. Cao, Yixue X. Li, Yu Z. Chen posted to polypharmacology by richardbickerton on 2009-07-29 14:48:31 as along with 9 people jbesnard ipark-kaist bertelsen abhishek_tiwari mingzhi wenhui nicklynch reyez Tingting
	Lead discovery: Tailoring nuclear receptor activation [My Copy] Nat Rev Drug Discov, Vol. 8, No. 2. (23 February 2009), pp. 107-107. by Peter Kirkpatrick posted to fragment_methods nuclear_receptors polypharmacology by richardbickerton on 2009-07-29 14:44:30 as
	Internet-based tools for communication and collaboration in chemistry. [My Copy] Drug discovery today, Vol. 13, No. 11-12. (June 2008), pp. 502-506. by A. J. Williams posted to chemistry_database semantic_web by richardbickerton on 2009-07-29 14:42:13 as along with 3 people AnthonySoprano guhjy dullhunk
	A perspective of publicly accessible/open-access chemistry databases [My Copy] Drug Discovery Today, Vol. 13, No. 11-12. (June 2008), pp. 495-501. by A. Williams posted to chemistry_database by richardbickerton on 2009-07-29 14:39:05 as along with 3 people Yanno nicklynch dullhunk
	Identification of Novel Extracellular Signal-Regulated Kinase Docking Domain Inhibitors [My Copy] Journal of Medicinal Chemistry, Vol. 48, No. 14. (1 July 2005), pp. 4586-4595. by Chad N. Hancock, Alba Macias, Eun K. Lee, Su Y. Yu, Alexander D. Mackerell, Paul Shapiro posted to kinases ontology_illustration by richardbickerton on 2009-07-29 14:38:03 as
	Multi-target therapeutics: when the whole is greater than the sum of the parts. [My Copy] Drug discovery today, Vol. 12, No. 1-2. (January 2007), pp. 34-42. by G. R. Zimmermann, J. Lehár, C. T. Keith posted to polypharmacology by richardbickerton on 2009-07-29 14:26:46 as along with 5 people sameersoi rmk jerome guhjy schuylrp
	Combination chemical genetics. [My Copy] Nature chemical biology, Vol. 4, No. 11. (November 2008), pp. 674-681. by Joseph Lehár, Brent R. Stockwell, Guri Giaever, Corey Nislow posted to chemical_genetics chemogenomics polypharmacology by richardbickerton on 2009-07-29 14:20:19 as along with 3 people davbroc mingzhi guhjy
	Spatial location and its relevance for terminological inferences in bio-ontologies. [My Copy] BMC bioinformatics, Vol. 8 (20 April 2007), 134. by S. Schulz, K. Markó, U. Hahn posted to ontologies by richardbickerton on 2009-07-25 19:12:10 as along with 2 people dansullivanblk mircea
	“Virtual Fragment Linking”: An Approach To Identify Potent Binders from Low Affinity Fragment Hits [My Copy] Journal of Medicinal Chemistry, Vol. 51, No. 8. (1 April 2008), pp. 2481-2491. by Thomas J. Crisman, Andreas Bender, Mariusz Milik, et al.Jeremy L. Jenkins, Josef Scheiber, Sai C. Sukuru, Jasna Fejzo, Ulrich Hommel, John W. Davies, Meir Glick posted to fragments virtual_screening by richardbickerton on 2009-05-25 12:06:23 as along with 1 person npt11tpn
	SYSTOMONAS--an integrated database for systems biology analysis of Pseudomonas. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (January 2007) by C. Choi, R. Münch, S. Leupold, et al.J. Klein, I. Siegel, B. Thielen, B. Benkert, M. Kucklick, M. Schobert, J. Barthelmes, C. Ebeling, I. Haddad, M. Scheer, A. Grote, K. Hiller, B. Bunk, K. Schreiber, I. Retter, D. Schomburg, D. Jahn posted to metabolomics pseudomas_aeruginosa by richardbickerton on 2009-05-25 10:36:43 as

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chemogenomics	13
polypharmacology	11
binding_pockets	6
essentiality	6
networks	6
cheminformatics	5
chemistry_database	5
hopkinslab	4
pseudomas_aeruginosa	4
antimicrobials	3
druggable_genome	3
genomics	3
metabolomics	3
multiobjective	3
ontologies	3
ontology_illustration	3
virtual_screening	3
allostery	2
bioinformatics	2
druggability	2
kinases	2
natural_products	2
network_inference	2
network_pharmacology	2
nuclear_receptors	2
ortholog_detection	2
pathways	2
protein_protein_interactions	2
target_prioritization	2
chemical_genetics	1
comorbidity	1
docking	1
druglikeness	1
drug_uptake	1
e-science	1
fragment_methods	1
fragments	1
medicinal_chemistry	1
network	1
proteochemometrics	1
sar_landscapes	1
screening	1
semantic_web	1
signal_transduction	1
structural_genomics	1
structure_comparison	1

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