rklancer's genecircuits [44 articles] Export Sort

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	Plasticity of the cis-Regulatory Input Function of a Gene. [My Copy] PLoS Biol, Vol. 4, No. 4. (April 2006) by A. E. Mayo, Y. Setty, S. Shavit, A. Zaslaver, U. Alon posted to evolution genecircuits by rklancer on 2006-04-12 04:02:41 as along with 5 people and 1 group lusk stevanspringer tmmurali bayesian discreteonyxorb FAB-lab
	An excitable gene regulatory circuit induces transient cellular differentiation. [My Copy] Nature, Vol. 440, No. 7083. (23 March 2006), pp. 545-550. by Gurol M. Suel, Jordi Garcia-Ojalvo, Louisa M. Liberman, Michael B. Elowitz posted to dynamics genecircuits by rklancer on 2006-03-29 04:38:58 as along with 14 people and 1 group yyfwuhan ashishanand megraw dswan alexg madhadron balabu nickluscombe comb dbikard mhucka margaritis paurue jjray EBI-regulation
	Negative autoregulation speeds the response times of transcription networks. [My Copy] J Mol Biol, Vol. 323, No. 5. (8 November 2002), pp. 785-793. by N. Rosenfeld, M. B. Elowitz, U. Alon posted to designprinciples genecircuits by rklancer on 2005-12-05 04:53:07 as along with 5 people Antoine_Decrulle balabu jjray bayesian margaritis
	Motifs, control, and stability. [My Copy] PLoS Biol, Vol. 3, No. 11. (November 2005) by J. Doyle, M. Csete posted to dynamics genecircuits by rklancer on 2005-11-29 02:40:44 as along with 5 people monod bayesian balicea javierFellow entropy
	Reconstruction of genetic circuits [My Copy] Nature, Vol. 438, No. 7067., pp. 443-448. by David Sprinzak, Michael B. Elowitz posted to genecircuits synthetic_biology by rklancer on 2005-11-25 20:20:47 as along with 10 people Scis0000002 lenov Synthetic_Biology_Literature TobiasAbenius monod tuck jmeppley avery dbikard austin
	Disorders in cell circuitry during multistage carcinogenesis: the role of homeostasis. [My Copy] Carcinogenesis, Vol. 21, No. 5. (May 2000), pp. 857-864. by I. B. Weinstein posted to cancer dynamics genecircuits synergistic_mutations by rklancer on 2005-10-30 04:50:29 as
	Limitations of quantitative gene regulation models: a case study. [My Copy] Genome Res, Vol. 13, No. 11. (November 2003), pp. 2391-2395. by P. M. Kim, B. Tidor posted to engineered_degradation genecircuits modelling by rklancer on 2005-10-02 17:21:31 as along with 6 people icecrown Scis0000002 monod wnpx mmt lambda
	Tuning genetic control through promoter engineering. [My Copy] Proc Natl Acad Sci U S A (25 August 2005) by Hal Alper, Curt Fischer, Elke Nevoigt, Gregory Stephanopoulos posted to genecircuits promoters synthetic_biology transcription by rklancer on 2005-08-29 23:30:03 as along with 1 person JKelly555
	Optimizing genetic circuits by global sensitivity analysis. [My Copy] Biophys J, Vol. 87, No. 4. (October 2004), pp. 2195-2202. by X. J. Feng, S. Hooshangi, D. Chen, G. Li, R. Weiss, H. Rabitz posted to genecircuits synthetic_biology by rklancer on 2005-08-29 23:07:52 as along with 3 people jjray ClaireFB dbikard
	MicroRNAs acting in a double-negative feedback loop to control a neuronal cell fate decision. [My Copy] Proc Natl Acad Sci U S A (12 August 2005) by Robert J J. Johnston, Sarah Chang, John F F. Etchberger, Christopher O O. Ortiz, Oliver Hobert posted to celegans development dynamics genecircuits genetic_dissection microrna multistability rna by rklancer on 2005-08-29 22:16:19 as along with 10 people and 2 groups thegoose2 daforerog qfwills heliopais tharris tardigrade mtagaya maralena bootsy balabu microRNA C. elegans / WormBase
	Circuit topology and the evolution of robustness in two-gene circadian oscillators. [My Copy] Proc Natl Acad Sci U S A (8 August 2005) by Andreas Wagner posted to circadianclock evolution genecircuits oscillators robustness by rklancer on 2005-08-16 19:58:15 as along with 3 people monod entropy eva_diva
	Electrical Models for Genetic Regulatory Elements [My Copy] (January 2003) by Gerald J. Sussman posted to dynamics electronics genecircuits by rklancer on 2005-08-08 05:12:06 as
	Environmental selection of the feed-forward loop circuit in gene-regulation networks [My Copy] Physical Biology, Vol. 2 (2005), pp. 81-88. by Erez Dekel, Shmoolik Mangan, Uri Alon posted to evolution genecircuits molecular_ecology by rklancer on 2005-07-29 18:56:44 as
	Nonlinear protein degradation and the function of genetic circuits. [My Copy] Proc Natl Acad Sci U S A (22 June 2005) by Nicolas E. Buchler, Ulrich Gerland, Terence Hwa posted to genecircuits by rklancer on 2005-06-25 05:09:06 as along with 3 people and 1 group jjray dbikard discreteonyxorb TranscriptionalRegulationWithThermodynamicModels
	Transcription control reprogramming in genetic backup circuits [My Copy] Nature Genetics, Vol. 37, No. 3. (20 February 2005), pp. 295-299. by Ran Kafri, Arren Bar-Even, Yitzhak Pilpel posted to evolution genecircuits robustness yeast by rklancer on 2005-06-11 02:30:18 as along with 4 people and 1 group biomcgary nickluscombe aswin jpoyatos EBI-regulation
	Chemogenomic profiling on a genome-wide scale using reverse-engineered gene networks [My Copy] Nature Biotechnology, Vol. 23, No. 3. (04 March 2005), pp. 377-383. by Diego di Bernardo, Michael J. Thompson, Timothy S. Gardner, et al.Sarah E. Chobot, Erin L. Eastwood, Andrew P. Wojtovich, Sean J. Elliott, Scott E. Schaus, James J. Collins posted to collins_lab genecircuits mni network_identification yeast by rklancer on 2005-06-03 16:09:11 as along with 12 people and 2 groups frohike edwardmorrissey mingzhi VGreiff provero ptrobajo snuppepuppan kentsis mjt rhem1224 balajis jayster4 TCR_Signaling SysbioMPI-TCells
	Synchronizing genetic oscillators by signaling molecules. [My Copy] J Biol Rhythms, Vol. 20, No. 3. (June 2005), pp. 257-269. by R. Wang, L. Chen posted to dynamics genecircuits noise oscillators sbw_analysis synthetic_biology by rklancer on 2005-05-28 21:26:35 as
	Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability. [My Copy] Curr Opin Cell Biol, Vol. 14, No. 2. (April 2002), pp. 140-148. by J. E. Ferrell posted to dynamics genecircuits multistabiity reviews signallingcircuits synthetic_biology by rklancer on 2005-05-25 16:58:31 as along with 7 people cryptochrome lna monod holan bayesian balicea jbchang
	Design of gene circuits: lessons from bacteria. [My Copy] Nat Rev Genet, Vol. 5, No. 1. (January 2004), pp. 34-42. by M. E. Wall, W. S. Hlavacek, M. A. Savageau posted to genecircuits sbw_designstrategies synthetic_biology by rklancer on 2005-05-21 17:49:58 as along with 5 people and 2 groups icases monod dbikard jjray grahamc TNT SynBioSys
	Design of genetic networks with specified functions by evolution in silico [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 2. (13 January 2004), pp. 580-585. by Paul FranÃ§ois, Vincent Hakim posted to computational evolution genecircuits sbw_designstrategies synthetic_biology by rklancer on 2005-05-18 21:33:44 as along with 8 people meanerelk Borelli rouault eldan monod dbikard discreteonyxorb mjoach
	Designer gene networks: Towards fundamental cellular control. [My Copy] Chaos, Vol. 11, No. 1. (March 2001), pp. 207-220. by Jeff Hasty, Farren Isaacs, Milos Dolnik, David McMillen, J. J. J. Collins posted to collins_lab dynamics genecircuits sbw_designstrategies sbw_proposedsystems synthetic_biology by rklancer on 2005-05-18 05:09:51 as along with 1 person rouault
	Directed evolution of a genetic circuit. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 26. (24 December 2002), pp. 16587-16591. by Y. Yokobayashi, R. Weiss, F. H. Arnold posted to arnold_lab directed_evolution evolution genecircuits sbw_designstrategies sbw_systemreports synthetic_biology by rklancer on 2005-05-18 05:06:58 as along with 1 person JKelly555
	Combinatorial synthesis of genetic networks. [My Copy] Science (New York, N.Y.), Vol. 296, No. 5572. (24 May 2002), pp. 1466-1470. by Călin C. Guet, Michael B. Elowitz, Weihong Hsing, Stanislas Leibler posted to engineered_degradation genecircuits sbw_designstrategies sbw_systemreports synthetic_biology by rklancer on 2005-05-18 05:00:43 as along with 6 people genocad tmmurali monod jjray johncumbers dbikard
	Frequency domain analysis of noise in autoregulated gene circuits. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 8. (15 April 2003), pp. 4551-4556. by Michael L. Simpson, Chris D. Cox, Gary S. Sayler posted to frequencydomain genecircuits noise by rklancer on 2005-05-18 03:28:51 as along with 6 people sjayanthi jjray margaritis kfm9876 dylanwalker marcio
	Gene Regulation at the Single-Cell Level [My Copy] Science, Vol. 307, No. 5717. (25 March 2005), pp. 1962-1965. by Nitzan Rosenfeld, Jonathan W. Young, Uri Alon, Peter S. Swain, Michael B. Elowitz posted to genecircuits by rklancer on 2005-05-18 02:40:49 as along with 20 people dbikard pkm ddcttrl Borelli boko4ikameto kshundyak jimeet snuppepuppan kentsis Toze bayesian balicea JKelly555 balabu comb mhucka timflutre margaritis csgillespie vladimirov
	Noise Propagation in Gene Networks [My Copy] Science, Vol. 307, No. 5717. (25 March 2005), pp. 1965-1969. by Juan M. Pedraza, Alexander van Oudenaarden posted to avano_lab genecircuits noise by rklancer on 2005-05-18 02:39:32 as along with 17 people balabu boko4ikameto winterschlaefer cjryan jimeet snuppepuppan JKelly555 samal madhadron jiyu mhucka timflutre margaritis brianb suizan jiny dylanwalker
	The use of oscillatory signals in the study of genetic networks. [My Copy] Proc Natl Acad Sci U S A (9 May 2005) by Ovidiu Lipan, Wing H H. Wong posted to dynamics frequencydomain genecircuits oscillators by rklancer on 2005-05-17 15:49:30 as along with 2 people mmcclean jjray
	Design principles for elementary gene circuits: Elements, methods, and examples. [My Copy] Chaos, Vol. 11, No. 1. (March 2001), pp. 142-159. by Michael A. A. Savageau posted to designprinciples genecircuits mathbio by rklancer on 2005-05-17 06:10:00 as along with 4 people and 1 group bertelsen macowell monod jjray BUiGEM
	Enhancement of cellular memory by reducing stochastic transitions [My Copy] Nature, Vol. 435, No. 7039., pp. 228-232. by Murat Acar, Attila Becskei, Alexander v. van Oudenaarden posted to avano_lab dynamics galactosesignalling genecircuits hysteresis noise yeast by rklancer on 2005-05-16 16:33:07 as along with 7 people and 1 group balabu jjray crmind balicea dbikard mhucka kfm9876 SynBioSys
	Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells. [My Copy] Genetics, Vol. 149, No. 4. (August 1998), pp. 1633-1648. by A. Arkin, J. Ross, H. H. McAdams posted to arkin_lab dynamics genecircuits noise stochastic_dynamics by rklancer on 2005-05-10 20:07:54 as along with 3 people biplabbose ner25 khachsar
	Spatiotemporal control of gene expression with pulse-generating networks. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 17. (27 April 2004), pp. 6355-6360. by S. Basu, R. Mehreja, S. Thiberge, M. T. Chen, R. Weiss posted to dynamics genecircuits sbw_systemreports synthetic_biology by rklancer on 2005-05-10 16:25:25 as along with 2 people maiko operon
	Programmable cells: interfacing natural and engineered gene networks. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 22. (1 June 2004), pp. 8414-8419. by H. Kobayashi, M. Kaern, M. Araki, et al.K. Chung, T. S. Gardner, C. R. Cantor, J. J. Collins posted to collins_lab genecircuits sbw_systemreports synthetic_biology by rklancer on 2005-05-06 17:43:57 as along with 3 people dbikard snowcrash austin
	Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli. [My Copy] Cell, Vol. 113, No. 5. (30 May 2003), pp. 597-607. by M. R. Atkinson, M. A. Savageau, J. T. Myers, A. J. Ninfa posted to dynamics genecircuits multistability oscillators sbw_systemreports synthetic_biology by rklancer on 2005-05-06 17:37:48 as along with 2 people and 1 group jasonpark1 balabu BP205
	A synthetic gene–metabolic oscillator [My Copy] Nature, Vol. 435, No. 7038., pp. 118-122. by Eileen Fung, Wilson W. Wong, Jason K. Suen, Thomas Bulter, Sun-Gu Lee, James C. Liao posted to dynamics genecircuits metabolism oscillators sbw_systemreports synthetic_biology by rklancer on 2005-05-06 17:17:29 as along with 5 people stasaki bayesian alexg balabu johncumbers
	Transcriptional control: rheostat converted to on/off switch. [My Copy] Mol Cell, Vol. 6, No. 3. (September 2000), pp. 723-728. by F. M. Rossi, A. M. Kringstein, A. Spicher, O. M. Guicherit, H. M. Blau posted to genecircuits threshold by rklancer on 2005-05-05 20:23:53 as
	A synthetic oscillatory network of transcriptional regulators [My Copy] Nature, Vol. 403, No. 6767. (20 January 2000), pp. 335-338. by M. B. Elowitz, S. Leibler posted to dynamics ecoli engineered_degradation genecircuits oscillators sbw_systemreports synthetic_biology by rklancer on 2005-05-02 02:23:00 as along with 23 people and 1 group joseph_x_zhou balabu stharward dbikard dannya222 abhishek_tiwari adamnellis sjayanthi jasonpark1 cjryan ClaireFB mattions dgront sharatjv mhucka margaritis Grobi msuarezdiez tvdbulck austin jjray dagmar Borelli BP205
	Expression of a cascading genetic network within liposomes. [My Copy] FEBS Lett, Vol. 576, No. 3. (22 October 2004), pp. 387-390. by K. Ishikawa, K. Sato, Y. Shima, I. Urabe, T. Yomo posted to genecircuits synthetic_biology by rklancer on 2005-05-02 00:59:56 as along with 1 person satsumakenji
	Structure and function of the feed-forward loop network motif [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 21. (14 October 2003), pp. 11980-11985. by S. Mangan, U. Alon posted to genecircuits motifs by rklancer on 2005-05-01 21:13:23 as along with 14 people and 3 groups nurban kaarsinogen camster korakot zqshen jstajic jjray alexg balicea ddahlem jtaylor gcalda marck hannahrajasingh Philosophy_of_Information dbk-lab Blog_and_Wiki_Research
	A synthetic multicellular system for programmed pattern formation [My Copy] Nature, Vol. 434, No. 7037. (28 April 2005), pp. 1130-1134. by Subhayu Basu, Yoram Gerchman, Cynthia H. Collins, Frances H. Arnold, Ron Weiss posted to genecircuits luxoperon sbw_systemreports self_organization synthetic_biology by rklancer on 2005-05-01 20:51:30 as along with 3 people ic2009 maiko dbikard
	Engineering gene networks to emulate Drosophila embryonic pattern formation. [My Copy] PLoS Biol, Vol. 3, No. 3. (March 2005) by M. Isalan, C. Lemerle, L. Serrano posted to development drosophila dynamics genecircuits synthetic_biology by rklancer on 2005-03-30 03:56:43 as along with 2 people and 2 groups indigoviolet livingthingdan EisenLab livingthing
	Prediction and measurement of an autoregulatory genetic module. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 13. (24 June 2003), pp. 7714-7719. by F. J. Isaacs, J. Hasty, C. R. Cantor, J. J. Collins posted to collins_lab genecircuits noise sbw_systemreports synthetic_biology by rklancer on 2005-03-20 17:45:44 as along with 2 people snuppepuppan johncumbers
	Ultrasensitivity and noise propagation in a synthetic transcriptional cascade [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 10. (8 March 2005), pp. 3581-3586. by Sara Hooshangi, Stephan Thiberge, Ron Weiss posted to genecircuits modelling noise sbw_systemreports synthetic_biology ultrasensitivity by rklancer on 2005-03-15 04:15:04 as along with 6 people dbikard ClaireFB JKelly555 madhadron johncumbers melting
	Principles of cell-free genetic circuit assembly. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 22. (28 October 2003), pp. 12672-12677. by V. Noireaux, R. Bar-Ziv, A. Libchaber posted to genecircuits synthetic_biology by rklancer on 2004-12-19 17:07:23 along with 2 people tempestblue grahamc
	Design of artificial cell-cell communication using gene and metabolic networks. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 8. (24 February 2004), pp. 2299-2304. by T. Bulter, S. G. Lee, W. W. Wong, E. Fung, M. R. Connor, J. C. Liao posted to genecircuits metabolic quorum sbw_systemreports synthetic_biology by rklancer on 2004-11-12 02:17:30 along with 3 people and 2 groups jec105 camster dbikard dbk-lab SynBioSys

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