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rklancer's modelling [26 articles]

Recent papers added to rklancer's library classified by the tag modelling. You can also see everyone's modelling.
  • Division accuracy in a stochastic model of Min oscillations in Escherichia coli.
    Proc Natl Acad Sci U S A (30 December 2005)
    by Rex A A Kerr, Herbert Levine, Terrence J J Sejnowski, Wouter-Jan J Rappel
    posted to dynamics ecoli modelling oscillations by rklancer on 2006-01-11 05:25:40 as **
  • Diffusion-limited phase separation in eukaryotic chemotaxis.
    Proc Natl Acad Sci U S A, Vol. 102, No. 47. (22 November 2005), pp. 16927-16932.
    posted to chemotaxis modelling by rklancer on 2005-11-29 19:48:48 as ** along with 1 person javierFellow
  • Mathematical modeling reveals threshold mechanism in CD95-induced apoptosis.
    J Cell Biol, Vol. 166, No. 6. (13 September 2004), pp. 839-851.
    posted to apoptosis cancer dynamics modelling sensitivity_analysis threshold by rklancer on 2005-11-03 05:34:02 as **
  • The dynamics of cell cycle regulation.
    Bioessays, Vol. 24, No. 12. (December 2002), pp. 1095-1109.
    posted to cellcycle dynamics modelling by rklancer on 2005-11-01 00:48:29 as ** along with 1 person bayesian
  • Bifurcation analysis of a model of the budding yeast cell cycle.
    Chaos, Vol. 14, No. 3. (September 2004), pp. 653-661.
    by D Battogtokh, JJ Tyson
    posted to cellcycle dynamics modelling noise by rklancer on 2005-10-31 05:53:05 as ****
  • Modeling T Cell Antigen Discrimination Based on Feedback Control of Digital ERK Responses.
    PLoS Biol, Vol. 3, No. 11. (25 October 2005)
    by Grégoire Altan-Bonnet, Ronald N N Germain
  • Interlinked Fast and Slow Positive Feedback Loops Drive Reliable Cell Decisions
    Science, Vol. 310, No. 5747. (21 October 2005), pp. 496-498.
    by Onn Brandman, James E Ferrell, Rong Li, Tobias Meyer
  • Stochastic modeling of drug resistance in cancer.
    J Theor Biol (26 September 2005)
    by Natalia Komarova
  • Limitations of quantitative gene regulation models: a case study.
    Genome Res, Vol. 13, No. 11. (November 2003), pp. 2391-2395.
    by PM Kim, B Tidor
  • The bacterial chemotactic response reflects a compromise between transient and steady-state behavior.
    Proc Natl Acad Sci U S A (20 June 2005)
    by Damon A A Clark, Lars C C Grant
  • Computational approaches to cellular rhythms.
    Nature, Vol. 420, No. 6912. (14 November 2002), pp. 238-245.
  • notes Bistability in the Ca(2+)/calmodulin-dependent protein kinase-phosphatase system.
    Biophys J, Vol. 79, No. 5. (November 2000), pp. 2211-2221.
    posted to calcium dynamics modelling multistability oscillators by rklancer on 2005-05-26 05:58:07 as *****
  • Modelling of simple and complex calcium oscillations. From single-cell responses to intercellular signalling.
    Eur J Biochem, Vol. 269, No. 5. (March 2002), pp. 1333-1355.
    by S Schuster, M Marhl, T Höfer
    posted to calcium modelling oscillators reviews by rklancer on 2005-05-22 06:56:55 as **
  • Cellml.org - Model Repository
    posted to mathbio modelling models by rklancer on 2005-05-22 06:05:15 as **
  • Modeling a synthetic multicellular clock: repressilators coupled by quorum sensing.
    Proc Natl Acad Sci U S A, Vol. 101, No. 30. (27 July 2004), pp. 10955-10960.
  • Ultrasensitivity and noise propagation in a synthetic transcriptional cascade.
    Proc Natl Acad Sci U S A, Vol. 102, No. 10. (8 March 2005), pp. 3581-3586.
  • Periodic signaling controlled by an oscillatory circuit that includes protein kinases ERK2 and PKA.
    Science, Vol. 304, No. 5672. (7 May 2004), pp. 875-878.
    by M Maeda, S Lu, G Shaulsky, Y Miyazaki, H Kuwayama, Y Tanaka, A Kuspa, WF Loomis
  • Mathematics is biology's next microscope, only better; biology is mathematics' next physics, only better.
    PLoS Biol, Vol. 2, No. 12. (December 2004)
    by JE Cohen
  • Robustness in simple biochemical networks.
    Nature, Vol. 387, No. 6636. (26 June 1997), pp. 913-917.
    by N Barkai, S Leibler
  • notes Modeling network dynamics: the lac operon, a case study.
    J Cell Biol, Vol. 161, No. 3. (12 May 2003), pp. 471-476.
    by JM Vilar, CC Guet, S Leibler
  • Modeling network dynamics: the lac operon, a case study
    (17 November 2004)
    by JMG Vilar, CC Guet, S Leibler
  • notes Molecular "vitalism".
    Cell, Vol. 100, No. 1. (7 January 2000), pp. 79-88.
    posted to modelling reviews self_organization by rklancer on 2004-11-28 03:56:08
  • Dynamic instability of microtubules as an efficient way to search in space
    Proceedings Of The National Academy Of Sciences Of The United States Of America, Vol. 91, No. 12. (07 June 1994), pp. 5682-5685.
    by TE Holy, S Leibler
    posted to modelling by rklancer on 2004-11-28 03:34:47
  • MAP kinase phosphatase as a locus of flexibility in a mitogen-activated protein kinase signaling network.
    Science, Vol. 297, No. 5583. (9 August 2002), pp. 1018-1023.
    by US Bhalla, PT Ram, R Iyengar
  • notes Modeling and computational analysis of EGF receptor-mediated cell communication in Drosophila oogenesis.
    Development, Vol. 129, No. 11. (June 2002), pp. 2577-2589.
    posted to computational development drosophila egfr modelling by rklancer on 2004-11-10 05:53:43
  • notes Topology and robustness in the Drosophila segment polarity network.
    PLoS Biol, Vol. 2, No. 6. (June 2004), pp. 805-815.
    by NT Ingolia
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