rmk's library 76 articles Export

	Combinatorics and next-generation sequencing [My Copy] Nature Biotechnology, Vol. 27, No. 9. (01 September 2009), pp. 826-827. by Nick Patterson, Stacey Gabriel posted to pooling by rmk on 2009-09-09 20:01:57 as along with 7 people and 1 group ethanmj ptrobajo n00c orzenil torfinnnome inesdesantiago qayub Journal picks
	Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data [My Copy] Nucl. Acids Res., Vol. 33, No. 20. (10 November 2005), pp. e175-e175. by Manhong Dai, Pinglang Wang, Andrew D. Boyd, et al.Georgi Kostov, Brian Athey, Edward G. Jones, William E. Bunney, Richard M. Myers, Terry P. Speed, Huda Akil, Stanley J. Watson, Fan Meng posted to bioinfo by rmk on 2009-09-08 16:31:43 as along with 11 people and 2 groups lwaldron giovenko pcahan1 frohike incovoma nicholso heliopais Montrachet shikin bertelsen waszak Bioinformatics GeneGo
	From gene expression to gene regulatory networks in Arabidopsis thaliana [My Copy] BMC Systems Biology, Vol. 3, No. 1. (3 September 2009), 85. by Chris Needham, Iain Manfield, Andrew Bulpitt, Philip Gilmartin, David Westhead posted to arb by rmk on 2009-09-04 14:41:16 as along with 9 people idonaldson pengchy Borelli ptrobajo danmaclean TRHvidsten barriot natstreet druvus
	Large-scale analysis of Arabidopsis transcription reveals a basal co-regulation network [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 86. by Osnat Atias, Benny Chor, Daniel Chamovitz posted to arb by rmk on 2009-09-04 14:40:48 as along with 3 people pengchy TRHvidsten coffeerv
	An Introduction To Compressive Sampling [My Copy] IEEE Signal Processing Magazine In Signal Processing Magazine, IEEE, Vol. 25, No. 2. (March 2008), pp. 21-30. by E. J. Candes, M. B. Wakin posted to cs by rmk on 2009-09-02 16:54:53 as along with 8 people cquinsac2 gfacciol kdouglass fghorow Dori2008 pick600 rmerz fujiyoshi-masaaki
	A yeast two-hybrid smart-pool-array system for protein-interaction mapping [My Copy] Nat Meth, Vol. 4, No. 5. (May 2007), pp. 405-407. by Fulai Jin, Larisa Avramova, Jing Huang, Tony Hazbun posted to ppi pooling by rmk on 2009-09-02 16:47:08 as along with 3 people guhjy Dualsystems zwang
	Effects of pooling mRNA in microarray class comparisons [My Copy] Bioinformatics, Vol. 20, No. 18. (9 July 2004), bth391. by Joanna H. Shih, Aleksandra M. Michalowska, Kevin Dobbin, Yumei Ye, Ting H. Qiu, Jeffrey E. Green posted to pooling microarray bioinfo by rmk on 2009-09-02 16:14:35 as
	Statistical implications of pooling RNA samples for microarray experiments [My Copy] BMC Bioinformatics, Vol. 4, No. 1. (24 June 2003), 26. by Xuejun Peng, Constance Wood, Eric Blalock, Kuey Chen, Philip Landfield, Arnold Stromberg posted to pooling microarray bioinfo by rmk on 2009-09-02 16:11:31 as along with 1 person textoris
	Effect of pooling samples on the efficiency of comparative studies using microarrays [My Copy] Bioinformatics, Vol. 21, No. 24. (15 December 2005), pp. 4378-4383. by Shu-Dong Zhang, Timothy W. Gant posted to pooling microarray bioinfo by rmk on 2009-09-02 16:08:52 as
	Shifted Transversal Design smart-pooling for high coverage interactome mapping [My Copy] Genome Research, Vol. 19, No. 7. (July 2009), pp. 1262-1269. by Xiaofeng Xin, Jean-François Rual, Tomoko Hirozane-Kishikawa, et al.David E. Hill, Marc Vidal, Charles Boone, Nicolas Thierry-Mieg posted to std pooling by rmk on 2009-09-02 16:05:16 as along with 1 person guhjy
	Optimizing Screening for Acute Human Immunodeficiency Virus Infection with Pooled Nucleic Acid Amplification Tests [My Copy] J. Clin. Microbiol., Vol. 46, No. 5. (1 May 2008), pp. 1785-1792. by Daniel J. Westreich, Michael G. Hudgens, Susan A. Fiscus, Christopher D. Pilcher posted to cgt hiv pooling by rmk on 2009-07-08 19:09:39 as along with 1 person taylo115
	Pooling in high-throughput drug screening [My Copy] Current Opinion in Drug Discovery & Development, Vol. 12, No. 3. (May 2009), pp. 339-350. by Kainkaryam posted to hts pooling quapo std by rmk on 2009-05-15 15:34:26 as
	Random Pooling Designs Under Various Structures [My Copy] Journal of Combinatorial Optimization, Vol. 7, No. 4. (21 December 2003), pp. 339-352. by F. K. Hwang, Y. C. Liu posted to cgt pooling by rmk on 2009-02-14 15:16:28 as
	Compressive sensing DNA microarrays. [My Copy] EURASIP journal on bioinformatics & systems biology (2009) by W. Dai, M. A. Sheikh, O. Milenkovic, R. G. Baraniuk posted to bioinfo cs microarray by rmk on 2009-02-12 17:56:09 as
	Improved Combinatorial Group Testing for Real-World Problem Sizes [My Copy] Algorithms and Data Structures (2005), pp. 86-98. by David Eppstein, Michael T. Goodrich, Daniel S. Hirschberg posted to cgt by rmk on 2009-01-23 15:37:07 as
	Drug screening[mdash]beyond the bottleneck [My Copy] Nat Biotech, Vol. 17, No. 9. (1999), pp. 859-863. by Alan Dove posted to hts by rmk on 2009-01-23 14:45:09 as
	Optimal Two-Stage Algorithms for Group Testing Problems [My Copy] SIAM J. Comput., Vol. 34, No. 5. (2005), pp. 1253-1270. by Annalisa De Bonis, Leszek Gasieniec, Ugo Vaccaro posted to cgt pooling by rmk on 2009-01-23 13:49:20 as
	Efficient pooling designs for library screening [My Copy] Genomics, Vol. 26, No. 1. (01 March 1995), pp. 21-30. by W. Bruno, E. Knill, D. Balding, et al.D. Bruce, N. Doggett, W. Sawhill, R. Stallings, C. Whittaker, D. Torney posted to bioinfo cgt pooling by rmk on 2009-01-23 13:19:43 as along with 1 person orzenil
	Pooling spaces and non-adaptive pooling designs [My Copy] Discrete Mathematics, Vol. 282, No. 1-3. (06 May 2004), pp. 163-169. by T. Huang posted to cgt pooling by rmk on 2009-01-23 13:01:22 as
	RDCurve: A Nonparametric Method to Evaluate the Stability of Ranking Procedures [My Copy] IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 99, No. 1. (5555) by Xin Lu, Anthony Gamst, Ronghui Xu posted to bioinfo microarray sysbio by rmk on 2009-01-19 14:01:12 as
	Synergy and antagonism of promiscuous inhibition in multiple-compound mixtures. [My Copy] Journal of medicinal chemistry, Vol. 49, No. 7. (6 April 2006), pp. 2151-2154. by B. Y. Feng, B. K. Shoichet posted to hts pooling synergy by rmk on 2009-01-15 23:05:37 as
	Explicit Non-adaptive Combinatorial Group Testing Schemes [My Copy] Automata, Languages and Programming (2008), pp. 748-759. by Ely Porat, Amir Rothschild posted to cgt pooling by rmk on 2009-01-15 22:49:57 as
	DESIGNING SCREENS: HOW TO MAKE YOUR HITS A HIT [My Copy] Nat Rev Drug Discov, Vol. 2, No. 4. (April 2003), pp. 259-266. by Patrick W. Walters, Mark Namchuk posted to hts statistics by rmk on 2009-01-15 22:48:05 as along with 1 person and 2 groups sangeetha Bioinformatics insilicodrug
	Deconvolution of Combinatorial Libraries for Drug Discovery: Experimental Comparison of Pooling Strategies [My Copy] Journal of Medicinal Chemistry, Vol. 39, No. 14. (1 January 1996), pp. 2720-2726. by Laura Wilson-Lingardo, Peter W. Davis, David J. Ecker, et al.Normand Hebert, Oscar Acevedo, Kelly Sprankle, Thomas Brennan, Leslie Schwarcz, Susan M. Freier, Jacqueline R. Wyatt posted to hts pooling by rmk on 2009-01-15 22:46:37 as
	Strategic Pooling of Compounds for High-Throughput Screening [My Copy] J. Chem. Inf. Comput. Sci., Vol. 39, No. 5. (27 September 1999), pp. 897-902. by M. Hann, B. Hudson, X. Lewell, R. Lifely, L. Miller, N. Ramsden posted to hts pooling by rmk on 2009-01-15 22:45:48 as along with 1 person LamBras
	A Positive Detecting Code and its Decoding Algorithm for DNA Library Screening [My Copy] IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 99, No. 1. (5555) by Hiroaki Uehara, Masakazu Jimbo posted to cgt bayes hts microarray pooling by rmk on 2009-01-15 22:41:40 as
	Group testing procedures with incomplete identification and unreliable testing results [My Copy] Applied Stochastic Models in Business and Industry, Vol. 22, No. 3. (2006), pp. 281-296. by Shaul K. Bar-Lev, Wolfgang Stadje, Frank posted to cgt pooling statistics by rmk on 2009-01-14 23:50:50 as
	Experimental design and sample size determination for testing synergism in drug combination studies based on uniform measures [My Copy] Statistics in Medicine, Vol. 22, No. 13. (2003), pp. 2091-2100. by Ming Tan, Hong-Bin Fang, Guo-Liang Tian, Peter J. Houghton posted to hts pooling synergy by rmk on 2009-01-13 21:16:45 as
	Bias, efficiency, and agreement for group-testing regression models [My Copy] Journal of Statistical Computation and Simulation, Vol. 79, No. 1., pp. 67-80. by Christopher Bilder, Joshua Tebbs posted to cgt pooling by rmk on 2009-01-13 21:15:21 as
	Systematic discovery of multicomponent therapeutics. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 13. (24 June 2003), pp. 7977-7982. by A. A. Borisy, P. J. Elliott, N. W. Hurst, et al.M. S. Lee, J. Lehar, E. R. Price, G. Serbedzija, G. R. Zimmermann, M. A. Foley, B. R. Stockwell, C. T. Keith posted to hts pooling by rmk on 2009-01-13 21:13:50 as along with 4 people yprassas superpyrin aheilbut Borelli
	Multi-target therapeutics: when the whole is greater than the sum of the parts. [My Copy] Drug discovery today, Vol. 12, No. 1-2. (January 2007), pp. 34-42. by G. R. Zimmermann, J. Lehár, C. T. Keith posted to hts pooling by rmk on 2009-01-13 21:13:04 as along with 5 people richardbickerton sameersoi jerome guhjy schuylrp
	Sample pooling to expedite bioanalysis and pharmacokinetic research [My Copy] Journal of Pharmaceutical and Biomedical Analysis, Vol. 16, No. 5. (January 1998), pp. 837-846. by B. Kuo posted to pooling by rmk on 2009-01-13 15:56:40 as
	High capacity screening of pooled compounds: Identification of the active compound without re-assay of pool members [My Copy] Drug Development Research, Vol. 37, No. 2. (1996), pp. 80-85. by James J. Devlin, Amy Liang, Lan Trinh, et al.Mark A. Polokoff, David Senator, Wei Zheng, Jason Kondracki, Peter J. Kretschmer, John Morser, Samuel E. Lipson, Richard Spann, John A. Loughlin, Kathryn V. Dunn, Michael M. Morrissey posted to hts pooling by rmk on 2009-01-12 17:12:45 as
	Statistical Evaluation of a Self-Deconvoluting Matrix Strategy for High-Throughput Screening of the CXCR3 Receptor [My Copy] ASSAY and Drug Development Technologies, Vol. 3, No. 4. (2005), pp. 413-424. by Sandrine Ferrand, Andres Schmid, Caroline Engeloch, Fraser J. Glickman posted to hts pooling by rmk on 2009-01-12 17:11:07 as
	Drug discovery and vaccine development using mixture-based synthetic combinatorial libraries [My Copy] Drug Discovery Today, Vol. 5, No. 7. (1 July 2000), pp. 276-285. by R. Houghten posted to hts pooling by rmk on 2009-01-05 15:58:49 as
	Scintillation proximity assays in high-throughput screening. [My Copy] Assay and drug development technologies, Vol. 6, No. 3. (June 2008), pp. 433-455. by J. F. Glickman, A. Schmid, S. Ferrand posted to hts pooling by rmk on 2009-01-03 17:12:04 as along with 1 person guhjy
	Evaluation of an Orthogonal Pooling Strategy for Rapid High-Throughput Screening of Proteases [My Copy] ASSAY and Drug Development Technologies, Vol. 6, No. 3. (2008), pp. 395-405. by Nuzhat Motlekar, Scott L. Diamond, Andrew D. Napper posted to hts pooling by rmk on 2009-01-03 15:18:26 as
	Maximizing the Identification of Leads from Compound Mixtures [My Copy] Letters in Drug Design & Discovery, Vol. 4, No. 3. (April 2007), pp. 215-223. by Warrior, Usha, Gopalakrishnan, et al.M. Sujatha, Traphagen, Linda, Freiberg, Gail, Towne, Danli, Humphrey, Patrick, Kofron, James, Burns, J. David posted to hts pooling by rmk on 2009-01-03 15:17:55 as
	COMPARISON OF COSTS FOR MULTI-STAGE GROUP TESTING METHODS IN THE PHARMACEUTICAL INDUSTRY [My Copy] Communications in Statistics - Theory and Methods, Vol. 30, No. 10. (2001), pp. 2189-2209. by Matthew C. Jones, Anatoly A. Zhigljavsky posted to hts pooling statistics by rmk on 2008-12-19 15:50:50 as
	Comparison of Group Testing Algorithms for Case Identification in the Presence of Test Error. [My Copy] Biometrics (14 May 2007) by Hae-Young Y. Kim, Michael G G. Hudgens, Jonathan M M. Dreyfuss, Daniel J J. Westreich, Christopher D D. Pilcher posted to hiv pooling by rmk on 2008-12-19 15:42:03 as along with 1 person guhjy
	Computational design of synthetic gene circuits with composable parts [My Copy] Bioinformatics, Vol. 24, No. 17. (1 September 2008), pp. 1903-1910. by M. A. Marchisio, J. Stelling posted to bioinfo synthbio by rmk on 2008-08-30 15:44:45 as along with 2 people austin lemke
	BioBayes: a software package for Bayesian inference in systems biology. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 17. (1 September 2008), pp. 1933-1934. by Vladislav Vyshemirsky, Mark Girolami posted to bayes bioinfo code sysbio by rmk on 2008-08-30 15:44:01 as along with 5 people operon renatomilani nuin lemke guhjy
	PoooL: an efficient method for estimating haplotype frequencies from large DNA pools. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 17. (1 September 2008), pp. 1942-1948. by Han Zhang, Hsin-Chou C. Yang, Yaning Yang posted to bioinfo decode pooling by rmk on 2008-08-30 15:43:17 as along with 3 people daforerog APRegier guhjy
	poolHiTS: A Shifted Transversal Design based pooling strategy for high-throughput drug screening [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Raghunandan Kainkaryam, Peter Woolf posted to bioinfo cgt pooling quapo std by rmk on 2008-08-17 22:45:37 as along with 3 people reyez neils guhjy
	Combining transcriptional datasets using the generalized singular value decomposition [My Copy] BMC Bioinformatics, Vol. 9 (08 August 2008), 335. by Andreas W. Schreiber, Neil J. Shirley, Rachel A. Burton, Geoffrey B. Fincher posted to bioinfo by rmk on 2008-08-08 21:47:38 as along with 5 people lptolik jfr GeeSharpMinor shigepong dansullivanblk
	GBParsy: A GenBank flatfile parser library with high speed [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Tae H. Lee, Yeon K. Kim, Baek H. Nahm posted to bioinfo by rmk on 2008-07-28 22:40:13 as along with 5 people and 1 group guhjy natstreet druvus nuin stajich Mycology
	Machine learning based analyses on metabolic networks supports high-throughput knockout screens [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Kitiporn Plaimas, Jan P. Mallm, Marcus Oswald, et al.Fabian Svara, Victor Sourjik, Roland Eils, Rainer Konig posted to bioinfo by rmk on 2008-07-24 13:14:16 as along with 1 person colinDotAIBN
	Lab automation: tales along the road to automation [My Copy] Nature Methods, Vol. 5, No. 1., pp. 109-112. by Nathan Blow posted to hts by rmk on 2008-07-23 14:48:07 as along with 2 people GeeSharpMinor guhjy
	Directed acyclic graph kernels for structural RNA analysis [My Copy] BMC Bioinformatics, Vol. 9 (22 July 2008), 318. by Kengo Sato, Toutai Mituyama, Kiyoshi Asai, Yasubumi Sakakibara posted to bioinfo by rmk on 2008-07-23 14:47:32 as
	A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification [My Copy] BMC Bioinformatics, Vol. 9 (22 July 2008), 319. by Alexander Statnikov, Lily Wang, Constantin F. Aliferis posted to bioinfo by rmk on 2008-07-23 14:47:08 as along with 5 people ucbcjbm rdiaz jfr mdharsee chad_davis