robertrentzsch's library 22 articles Export

	HSP-HMMER: a tool for protein domain identification on a large scale [My Copy] In SAC '09: Proceedings of the 2009 ACM symposium on Applied Computing (2009), pp. 766-770. by Bhanu Rekapalli, Christian Halloy, Igor B. Zhulin posted to hmmer hmm domain detection 13-nov-09 by robertrentzsch on 2009-11-13 11:17:37 as along with 1 group Orengo Group Journal Picks
	Computation for ChIP-seq and RNA-seq studies. [My Copy] Nature methods, Vol. 6, No. 11 Suppl. (15 November 2009), pp. S22-S32. by Shirley Pepke, Barbara Wold, Ali Mortazavi posted to rna-seq chip 13-nov-09 by robertrentzsch on 2009-11-13 10:52:38 as along with 23 people and 2 groups urgi Jporci pst epigenetics timflutre molnet-mna Vincent_Rouilly guhjy cajunsushi mpizbioinfo stubrown hzoltan xingxu oannes74 tonamswish inesdesantiago Baschl polivares jwfoley druvus GeeSharpMinor chvlyl heliopais molnet-macs Orengo Group Journal Picks
	Computer-aided design of functional protein interactions [My Copy] Nature Chemical Biology, Vol. 5, No. 11. (19 October 2009), pp. 797-807. by Daniel J. Mandell, Tanja Kortemme posted to protein_design 13-nov-09 by robertrentzsch on 2009-11-13 10:51:11 as along with 3 people and 2 groups cchang pablocarb flbarroso Orengo Group Journal Picks Chang group
	Computational methods for discovering structural variation with next-generation sequencing [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S13-S20. by Paul Medvedev, Monica Stanciu, Michael Brudno posted to variation sequencing genome 13-nov-09 by robertrentzsch on 2009-11-13 10:48:46 as along with 17 people and 2 groups seb1 pst owenlancaster oannes74 toszko kiekyon michaelbarton jasontsai sameersoi heliopais druvus GeeSharpMinor Peiyong n00c gdv desany qayub Orengo Group Journal Picks Journal picks
	Sense from sequence reads: methods for alignment and assembly [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S6-S12. by Paul Flicek, Ewan Birney posted to reads genome assembly alignment 13-nov-09 by robertrentzsch on 2009-11-13 10:44:39 as along with 14 people and 1 group ajsferreira pst owenlancaster oannes74 Thaverkamp jasontsai natstreet seb1 druvus chvlyl GeeSharpMinor n00c venancio desany Orengo Group Journal Picks
	Obesity alters gut microbial ecology. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 31. (2 August 2005), pp. 11070-11075. by Ruth E. Ley, Fredrik Bäckhed, Peter Turnbaugh, Catherine A. Lozupone, Robin D. Knight, Jeffrey I. Gordon posted to metagenomics by robertrentzsch on 2009-10-30 14:57:50 as along with 4 people and 2 groups sim82 Zephyrus marimo michC Orengo Group Journal Picks MathBio
	An obesity-associated gut microbiome with increased capacity for energy harvest. [My Copy] Nature, Vol. 444, No. 7122. (21 December 2006), pp. 1027-1031. by Peter J. Turnbaugh, Ruth E. Ley, Michael A. Mahowald, Vincent Magrini, Elaine R. Mardis, Jeffrey I. Gordon posted to metagenomics by robertrentzsch on 2009-10-30 14:56:44 as along with 8 people and 3 groups Thaverkamp Zephyrus ana jmeppley michC srfairclough wenhan GX Orengo Group Journal Picks structural_bioinformatics Bioinformatics
	Systems biology: Untangling the protein web [My Copy] Nature, Vol. 460, No. 7253. (15 July 2009), pp. 415-418. by Nathan Blow posted to 23-oct-09 by robertrentzsch on 2009-10-23 11:42:23 as along with 14 people and 1 group pekrau apocapoc psique leemond31 colmryan reyez carlk guhjy saket tmmurali dswan dullhunk renatomilani agonzale Orengo Group Journal Picks
	Neuroscience in the era of functional genomics and systems biology [My Copy] Nature, Vol. 461, No. 7266. (14 October 2009), pp. 908-915. by Daniel H. Geschwind, Genevieve Konopka posted to 23-oct-09 by robertrentzsch on 2009-10-23 11:39:14 as along with 3 people and 1 group jlike daforerog ckemere Orengo Group Journal Picks
	Strategic Reading, Ontologies, and the Future of Scientific Publishing [My Copy] Science, Vol. 325, No. 5942. (14 August 2009), pp. 828-832. by Allen H. Renear, Carole L. Palmer posted to 11-sep-09 publishing ontology by robertrentzsch on 2009-09-11 11:34:28 as along with 49 people and 10 groups gthorisson lilith nancylongnecker cisevol aaltenburger radagabriel antonkratz guhjy artaban421 malkav30 conne262 clarabermudez jclau pick600 CulCog yuifu daforerog smuekusc robertlischke nperoni drevicko eisdur jago dayjm sebpaquet tnhh rickl Tomste fheintz reyez biologyeditors fgibson lmichan samjlord rdiaz polivares jandot dullhunk deanmalmgren druvus modza emptyhb plosmedicine renatomilani Zephyrus applebyb newtekken rschulz PaperCollector 8_01 BergmanLab Semantic networks in translation Orengo Group Journal Picks Ubicomp STS Convention on Knowledge Commons Integrative Expertise for Global Health moernerlab Journal picks
	Molecular implementation of simple logic programs [My Copy] Nature Nanotechnology, Vol. 4, No. 10. (02 August 2009), pp. 642-648. by Tom Ran, Shai Kaplan, Ehud Shapiro posted to 11-sep-09 programs molecular_computers logic algorithms by robertrentzsch on 2009-09-11 11:17:59 as along with 1 person and 1 group pirapira Orengo Group Journal Picks
	Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models [My Copy] Nature Methods, Vol. 6, No. 9. (02 August 2009), pp. 673-676. by Arthur Brady, Steven L. Salzberg posted to 11-sep-09 training phylogenetic metagenomics hmms classification by robertrentzsch on 2009-09-11 11:13:42 as along with 7 people and 4 groups azazello dakelley skembel Thaverkamp sharpton jbhiatt stajich Orengo Group Journal Picks iSEEM Journal picks Mycology
	The Systems Biology Graphical Notation [My Copy] Nature Biotechnology, Vol. 27, No. 8. (07 August 2009), pp. 735-741. by Nicolas L. Novere, Michael Hucka, Huaiyu Mi, et al.Stuart Moodie, Falk Schreiber, Anatoly Sorokin, Emek Demir, Katja Wegner, Mirit I. Aladjem, Sarala M. Wimalaratne, Frank T. Bergman, Ralph Gauges, Peter Ghazal, Hideya Kawaji, Lu Li, Yukiko Matsuoka, Alice Villeger, Sarah E. Boyd, Laurence Calzone, Melanie Courtot, Ugur Dogrusoz, Tom C. Freeman, Akira Funahashi, Samik Ghosh, Akiya Jouraku, Sohyoung Kim, Fedor Kolpakov, Augustin Luna, Sven Sahle, Esther Schmidt, Steven Watterson, Guanming Wu, Igor Goryanin, Douglas B. Kell, Chris Sander, Herbert Sauro, Jacky L. Snoep, Kurt Kohn, Hiroaki Kitano posted to 11-sep-09 systems_biology representation ontology notation by robertrentzsch on 2009-09-11 11:12:42 as along with 38 people and 3 groups singhsh greg tonamswish pablocarb josepe abc623 daforerog abhishek_tiwari ngehlenborg pekrau thegoose bertelsen fgibson Borelli thomaskelder pmendes dullhunk polivares chasmand brianb roys torfinnnome guhjy Zephyrus lenov reyez allysonlister apocapoc renatomilani VGreiff druvus sjcockell jandot megraw leliavski frohike fpattyn jhyang Orengo Group Journal Picks Journal picks Neuroblastoma
	A 3D digital atlas of C. elegans and its application to single-cell analyses [My Copy] Nat Meth, Vol. 6, No. 9. (16 August 2009), pp. 667-672. by Fuhui Long, Hanchuan Peng, Xiao Liu, Stuart K. Kim, Eugene Myers posted to 11-sep-09 worm visualisation organism nematode model elegans by robertrentzsch on 2009-09-11 11:11:11 as along with 1 person and 1 group abhishek_tiwari Orengo Group Journal Picks
	Genome-scale gene/reaction essentiality and synthetic lethality analysis [My Copy] Molecular Systems Biology, Vol. 5 (18 August 2009) by Patrick F. Suthers, Alireza Zomorrodi, Costas D. Maranas posted to synthetic networks lethality interactions genetic essentiality by robertrentzsch on 2009-09-11 11:09:30 as along with 2 people and 1 group pinney biomcgary Orengo Group Journal Picks
	Neuroproteomics: understanding the molecular organization and complexity of the brain. [My Copy] Nature reviews. Neuroscience, Vol. 10, No. 9. (01 September 2009), pp. 635-646. by Alex Bayés, Seth G. Grant posted to 11-sep-09 review neurobiology networks brain by robertrentzsch on 2009-09-11 11:07:39 as along with 2 people and 1 group rcr1991 daforerog Orengo Group Journal Picks
	Post-publication sharing of data and tools [My Copy] Nature, Vol. 461, No. 7261. (09 September 2009), pp. 171-173. by Paul N. Schofield, Tania Bubela, Thomas Weaver, et al.Lili Portilla, Stephen D. Brown, John M. Hancock, David Einhorn, Glauco Tocchini-Valentini, Martin Hrabe de Angelis, Nadia Rosenthal posted to 11-sep-09 source sharing practice good data code by robertrentzsch on 2009-09-11 11:06:39 as along with 10 people and 1 group CulCog heliopais tnhh druvus pick600 PaperCollector daforerog applebyb pkonings dullhunk Orengo Group Journal Picks
	ChIP\|[ndash]\|seq: advantages and challenges of a maturing technology [My Copy] Nature Reviews Genetics, Vol. 10, No. 10. (08 September 2009), pp. 669-680. by Peter J. Park posted to 11-sep-09 transcription technology factor chip-seq by robertrentzsch on 2009-09-11 10:48:27 as along with 24 people and 6 groups akakak hzoltan dchughes RyuOgawa heliopais giovenko inesdesantiago pradiptaray dakelley clearbluespring akundaje rdiaz kimorley leliavski humburg reyez qayub fenghezi tonamswish polivares idonaldson rschulz cvaldes danmaclean Journal picks Orengo Group Journal Picks JLab BergmanLab CTCF Chromatin
	Domain-based and family-specific sequence identity thresholds increase the levels of reliable protein function transfer. [My Copy] Journal of molecular biology, Vol. 387, No. 2. (27 March 2009), pp. 416-430. by Sarah Addou, Robert Rentzsch, David Lee, Christine A. Orengo posted to orengogroup by robertrentzsch on 2009-07-31 12:15:22 as along with 1 person and 1 group barry Orengo Group Journal Picks
	Protein function prediction--the power of multiplicity. [My Copy] Trends in biotechnology, Vol. 27, No. 4. (27 April 2009), pp. 210-219. by Robert Rentzsch, Christine A. Orengo posted to orengogroup by robertrentzsch on 2009-07-31 12:13:54 as along with 5 people and 1 group dxlmm Keywan daforerog Katje idoerg Orengo Group Journal Picks
	Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees [My Copy] Science, Vol. 324, No. 5934. (19 June 2009), pp. 1561-1564. by Kevin Liu, Sindhu Raghavan, Serita Nelesen, C. Randal Linder, Tandy Warnow posted to tree phylogeny alignment 31-jul-09 by robertrentzsch on 2009-07-30 17:33:38 as along with 26 people and 4 groups gjuggler parnell kinestetika xianjun gdb jbhiatt stajich operon biomcgary kieran101 zwang michaelbarton vingron tatman303 hryk lizbiogen pkonings ppgardne dokky aprasad timflutre inquil TRHvidsten djkt fenghezi phoenixzxl Orengo Group Journal Picks Mycology Journal picks iSEEM
	Missing in action: enzyme functional annotations in biological databases [My Copy] Nature Chemical Biology, Vol. 5, No. 8. (01 August 2009), pp. 521-525. by Nicholas Furnham, John S. Garavelli, Rolf Apweiler, Janet M. Thornton posted to enzyme annotation 31-jul-09 by robertrentzsch on 2009-07-30 17:27:32 as along with 3 people and 1 group seb1 reyez renatomilani Orengo Group Journal Picks

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robertrentzsch's library 22 articles Export

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