robfsouza's enzyme [56 articles] Export

Recent papers added to robfsouza's library classified by the tag enzyme. You can also see everyone's enzyme.

	Evolution by leaps: gene duplication in bacteria [My Copy] Biology Direct, Vol. 4, No. 1. (2009), 46. by Margrethe Serres, Alastair Kerr, Thomas McCormack, Monica Riley posted to protein inactive evolution enzyme by robfsouza on 2009-11-24 18:04:05 as
	Structure-guided recombination creates an artificial family of cytochromes P450 [My Copy] PLoS Biol, Vol. 4, No. 5. (May 2006) by Christopher R. Otey, Marco Landwehr, Jeffrey B. Endelman, Kaori Hiraga, Jesse D. Bloom, Frances H. Arnold posted to temperature system stability sequence recombination recombinant proteins protein p-450 molecular models laurates hot genetic folding enzyme engineering cytochrome conformation amino alignment acid by robfsouza on 2009-11-24 15:17:15 as
	Emergence of diverse biochemical activities in evolutionarily conserved structural scaffolds of proteins [My Copy] Current Opinion in Chemical Biology, Vol. 7, No. 1. (Feb 2003), pp. 12-20. by Vivek Anantharaman, L. Aravind, Eugene V. Koonin posted to tertiary structure structural sequence proteins protein molecular inactive homology family evolution enzymes enzyme conserved catalysis aravind by robfsouza on 2009-11-24 15:17:11 as
	Is protein classification necessary? Toward alternative approaches to function annotation [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 3. (5 Jun 2009), pp. 363-368. by Donald Petrey, Barry Honig posted to structure protein inactive enzyme classification by robfsouza on 2009-10-07 17:07:31 as along with 8 people and 4 groups dfdong sconlan davidalee sobolevnrm janasont idoerg fgibson barry Orengo Group Journal Picks baker-group structural_bioinformatics Bioinformatics
	SCOPEC: a database of protein catalytic domains [My Copy] Bioinformatics, Vol. 20, No. suppl_1. (4 Aug 2004), pp. i130-136. by Richard A. George, Ruth V. Spriggs, Janet M. Thornton, Bissan Al-Lazikani, Mark B. Swindells posted to structure site protein inactive enzyme catalytic by robfsouza on 2009-10-07 17:00:53 as along with 5 people ucbcjbm pablocarb shung gbart tny
	Inactive Enzyme-homologues Find New Function in Regulatory Processes [My Copy] Journal of Molecular Biology, Vol. 340, No. 3. (09 Jul 2004), pp. 399-404. by Birgit Pils, Jörg Schultz posted to protein inactive fold evolution enzyme by robfsouza on 2009-09-30 00:55:50 as along with 3 people tny jwm Jporci
	Resurrecting the Ancestral Enzymatic Role of a Modulatory Subunit [My Copy] Journal of Biological Chemistry, Vol. 280, No. 11. (18 Mar 2005), pp. 10189-10195. by Miguel A. Ballicora, Jennifer R. Dubay, Claire H. Devillers, Jack Preiss posted to reconstruction inactive evolution enzyme domain ancestral by robfsouza on 2009-09-21 16:50:34 as along with 2 people and 1 group matzke nknii TCR_Signaling
	AAA+: A Class of Chaperone-Like ATPases Associated with the Assembly, Operation, and Disassembly of Protein Complexes [My Copy] Genome Research, Vol. 9, No. 1. (1 Jan 1999), pp. 27-43. by Andrew F. Neuwald, L. Aravind, John L. Spouge, Eugene V. Koonin posted to superfamily inactive enzyme chaperone atpase aravind by robfsouza on 2009-09-18 23:31:18 as along with 1 person leemary4
	Apoptotic Molecular Machinery: Vastly Increased Complexity in Vertebrates Revealed by Genome Comparisons [My Copy] Science, Vol. 291, No. 5507. (16 Feb 2001), pp. 1279-1284. by L. Aravind, Vishva M. Dixit, Eugene V. Koonin posted to vertebrates inactive evolution enzyme aravind apoptosis by robfsouza on 2009-09-18 23:28:19 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	Phosphoesterase domains associated with DNA polymerases of diverse origins [My Copy] Nucl. Acids Res., Vol. 26, No. 16. (15 Aug 1998), pp. 3746-3752. by L. Aravind, E. V. Koonin posted to polymerase inactive evolution enzyme dna aravind by robfsouza on 2009-09-18 23:27:35 as
	Genome of the Extremely Radiation-Resistant Bacterium Deinococcus radiodurans Viewed from the Perspective of Comparative Genomics [My Copy] Microbiol. Mol. Biol. Rev., Vol. 65, No. 1. (1 Mar 2001), pp. 44-79. by Kira S. Makarova, L. Aravind, Yuri I. Wolf, et al.Roman L. Tatusov, Kenneth W. Minton, Eugene V. Koonin, Michael J. Daly posted to sequence inactive genome enzyme aravind by robfsouza on 2009-09-18 23:23:24 as along with 2 people and 1 group operon beatrizfernandez Microbial-Ecology
	Complete genome sequence of the apicomplexan, Cryptosporidium parvum. [My Copy] Science, Vol. 304, No. 5669. (16 Apr 2004), pp. 441-445. by Mitchell S. Abrahamsen, Thomas J. Templeton, Shinichiro Enomoto, et al.Juan E. Abrahante, Guan Zhu, Cheryl A. Lancto, Mingqi Deng, Chang Liu, Giovanni Widmer, Saul Tzipori, Gregory A. Buck, Ping Xu, Alan T. Bankier, Paul H. Dear, Bernard A. Konfortov, Helen F. Spriggs, Lakshminarayan Iyer, Vivek Anantharaman, L. Aravind, Vivek Kapur posted to sequence inactive genome enzyme aravind by robfsouza on 2009-09-18 23:21:49 as along with 3 people kaarsinogen Cortel shung
	Eukaryote-specific Domains in Translation Initiation Factors: Implications for Translation Regulation and Evolution of the Translation System [My Copy] Genome Research, Vol. 10, No. 8. (1 Aug 2000), pp. 1172-1184. by L. Aravind, Eugene V. Koonin posted to translation regulation inactive factor evolution eukaryote enzyme aravind by robfsouza on 2009-09-18 23:20:10 as
	Differential Action of Natural Selection on the N and C-terminal Domains of 2′-5′ Oligoadenylate Synthetases and the Potential Nuclease Function of the C-terminal Domain [My Copy] Journal of Molecular Biology, Vol. 326, No. 5. (07 Mar 2003), pp. 1449-1461. by Igor B. Rogozin, L. Aravind, Eugene V. Koonin posted to selection inactive evolution enzyme aravind by robfsouza on 2009-09-18 23:15:11 as
	The catalytic domains of thiamine triphosphatase and CyaB-like adenylyl cyclase define a novel superfamily of domains that bind organic phosphates [My Copy] BMC Genomics, Vol. 3, No. 1. (2002), 33. by Lakshminarayan Iyer, L. Aravind posted to superfamily protein inactive fold enzyme domain aravind by robfsouza on 2009-09-18 23:09:50 as
	The domains of death: evolution of the apoptosis machinery [My Copy] Trends in Biochemical Sciences, Vol. 24, No. 2. (1 Feb 1999), pp. 47-53. by L. Aravind posted to inactive enzyme domain aravind apoptosis by robfsouza on 2009-09-18 23:06:14 as
	Diversification of Catalytic Activities and Ligand Interactions in the Protein Fold Shared by the Sugar Isomerases, eIF2B, DeoR Transcription Factors, Acyl-CoA Transferases and Methenyltetrahydrofolate Synthetase [My Copy] Journal of Molecular Biology, Vol. 356, No. 3. (24 Feb 2006), pp. 823-842. by Vivek Anantharaman, L. Aravind posted to protein inactive fold enzyme carbohydrate aravind by robfsouza on 2009-09-18 23:04:56 as along with 1 person tny
	Anatomy of the E2 ligase fold: Implications for enzymology and evolution of ubiquitin/Ub-like protein conjugation [My Copy] Journal of Structural Biology, Vol. 162, No. 2. (May 2008), pp. 205-218. by A. Burroughs, M. Jaffee, L. Iyer, L. Aravind posted to ubiquitin inactive fold enzyme aravind by robfsouza on 2009-09-18 22:58:34 as
	Comparative Genomics of Protists: New Insights into the Evolution of Eukaryotic Signal Transduction and Gene Regulation* [My Copy] Annual Review of Microbiology, Vol. 61, No. 1. (2007), pp. 453-475. by Vivek Anantharaman, Lakshminarayan M. Iyer, L. Aravind posted to transduction signal regulation inactive gene expression evolution enzyme aravind by robfsouza on 2009-09-18 22:56:09 as along with 1 person cmzmasek
	Evolutionary genomics of the HAD superfamily: understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied enzymes. [My Copy] Journal of molecular biology, Vol. 361, No. 5. (1 Sep 2006), pp. 1003-1034. by A. Maxwell Burroughs, Karen N. Allen, Debra Dunaway-Mariano, L. Aravind posted to superfamily protein inactive fold evolution enzyme aravind by robfsouza on 2009-09-18 22:54:02 as along with 3 people martainn tny christiw
	DNA polymerase beta-like nucleotidyltransferase superfamily: identification of three new families, classification and evolutionary history [My Copy] Nucl. Acids Res., Vol. 27, No. 7. (1 Apr 1999), pp. 1609-1618. by L. Aravind, E. V. Koonin posted to superfamily polymerase inactive evolution enzyme dna aravind by robfsouza on 2009-09-18 22:48:32 as
	The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like beta-grasp domains [My Copy] Genome Biol, Vol. 7, No. 7. (19 Jul 2006), R60. by Lakshminarayan Iyer, A. Maxwell Burroughs, L. Aravind posted to ubiquitin protein prokaryotes inactive fold evolution enzyme aravind by robfsouza on 2009-09-18 22:43:56 as
	Novel Families of Putative Protein Kinases in Bacteria and Archaea: Evolution of the âEukaryoticâ Protein Kinase Superfamily [My Copy] Genome Research, Vol. 8, No. 10. (1 Oct 1998), pp. 1038-1047. by Christopher J. Leonard, L. Aravind, Eugene V. Koonin posted to superfamily protein kinase inactive fold enzyme aravind by robfsouza on 2009-09-18 22:42:18 as along with 3 people and 1 group anuragsethi thegoose2 tharris C. elegans / WormBase
	The X-ray crystallographic structure and activity analysis of a <I>Pseudomonas-</I>specific subfamily of the HAD enzyme superfamily evidences a novel biochemical function [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 70, No. 1. (2008), pp. 197-207. by Ezra Peisach, Liangbing Wang, A. Maxwell Burroughs, L. Aravind, Debra Dunaway-Mariano, Karen N. Allen posted to structure protein inactive enzyme aravind by robfsouza on 2009-09-18 22:33:22 as
	Quod erat demonstrandum? The mystery of experimental validation of apparently erroneous computational analyses of protein sequences [My Copy] Genome Biol, Vol. 2, No. 12. (2001) by Lakshminarayan Iyer, L. Aravind, Peer Bork, et al.Kay Hofmann, Arcady Mushegian, Igor Zhulin, Eugene Koonin posted to sequence science inactive enzyme bioinformatics aravind analysis by robfsouza on 2009-09-18 22:31:39 as along with 2 people bpcusack eweaver
	Adhesion Molecules and Other Secreted Host‐Interaction Determinants in Apicomplexa: Insights from Comparative Genomics [My Copy] International Review of Cytology, Vol. 262 (2007), pp. 1-74. by V. Anantharaman, L. Iyer, S. Balaji, L. Aravind posted to inactive genomics evolution enzyme comparative aravind adhesion by robfsouza on 2009-09-18 22:28:41 as
	Plasmodium BiologyGenomic Gleanings [My Copy] Cell, Vol. 115, No. 7. (26 Dec 2003), pp. 771-785. by L. Aravind, Lakshminarayan M. Iyer, Thomas E. Wellems, Louis H. Miller posted to inactive enzyme aravind by robfsouza on 2009-09-18 22:25:55 as
	The many faces of the helix-turn-helix domain: Transcription regulation and beyond\{\&\{\\#x22C6; [My Copy] FEMS Microbiology Reviews, Vol. 29, No. 2. (2005), pp. 231-262. by L. Aravind, Vivek Anantharaman, Santhanam Balaji, Mohan M. Babu, Lakshminarayan M. Iyer posted to transcription protein inactive fold evolution enzyme domain aravind by robfsouza on 2009-09-18 22:22:35 as
	Evolution and Classification of P-loop Kinases and Related Proteins☆ [My Copy] Journal of Molecular Biology, Vol. 333, No. 4. (31 Oct 2003), pp. 781-815. by Detlef D. Leipe, Eugene V. Koonin, L. Aravind posted to protein kinase inactive fold evolution enzyme aravind by robfsouza on 2009-09-18 22:17:14 as along with 1 person tny
	Detection of novel members, structure-function analysis and evolutionary classification of the 2H phosphoesterase superfamily [My Copy] Nucl. Acids Res., Vol. 30, No. 23. (1 Dec 2002), pp. 5229-5243. by Raja Mazumder, Lakshminarayan M. Iyer, Sona Vasudevan, L. Aravind posted to protein inactive fold evolution enzyme aravind by robfsouza on 2009-09-18 22:09:37 as along with 1 person and 1 group lilith 8_01
	The RAGNYA fold: a novel fold with multiple topological variants found in functionally diverse nucleic acid, nucleotide and peptide-binding proteins [My Copy] Nucl. Acids Res., Vol. 35, No. 17. (27 Sep 2007), pp. 5658-5671. by S. Balaji, L. Aravind posted to peptide_binding nucleotide inactive fold enzyme binding aravind by robfsouza on 2009-09-18 22:07:19 as
	Themis is a member of a new metazoan gene family and is required for the completion of thymocyte positive selection [My Copy] Nature Immunology, Vol. 10, No. 8. (13 Jul 2009), pp. 831-839. by Andy L. Johnson, L. Aravind, Natalia Shulzhenko, et al.Andre Morgun, See-Young Choi, Tanya L. Crockford, Teresa Lambe, Heather Domaschenz, Edyta M. Kucharska, Lixin Zheng, Carola G. Vinuesa, Michael J. Lenardo, Christopher C. Goodnow, Richard J. Cornall, Ronald H. Schwartz posted to protein inactive fold evolution enzyme domain aravind by robfsouza on 2009-09-18 22:05:45 as along with 1 person leliavski
	Small but versatile: the extraordinary functional and structural diversity of the beta-grasp fold [My Copy] Biology Direct, Vol. 2, No. 1. (02 Jul 2007), 18. by A. Maxwell Burroughs, S. Balaji, Lakshminarayan Iyer, L. Aravind posted to protein inactive fold evolution enzyme domain aravind by robfsouza on 2009-09-18 22:00:49 as
	The signaling helix: a common functional theme in diverse signaling proteins [My Copy] Biology Direct, Vol. 1, No. 1. (05 Sep 2006), 25. by Vivek Anantharaman, S. Balaji, L. Aravind posted to signaling protein inactive fold evolution enzyme aravind by robfsouza on 2009-09-18 21:58:51 as along with 1 person choonpeng
	Analysis of DBC1 and its homologs suggests a potential mechanism for regulation of sirtuin domain deacetylases by NAD metabolites. [My Copy] Cell Cycle, Vol. 7, No. 10. (15 May 2008), pp. 1467-1472. by Vivek Anantharaman, L. Aravind posted to protein inactive fold evolution enzyme domain aravind acetylation by robfsouza on 2009-09-18 21:38:46 as
	Classification of the caspase-hemoglobinase fold: Detection of new families and implications for the origin of the eukaryotic separins [My Copy] Proteins: Structure, Function, and Genetics, Vol. 46, No. 4. (2002), pp. 355-367. by L. Aravind, Eugene V. Koonin posted to protease inactive fold evolution enzyme aravind by robfsouza on 2009-09-18 21:36:22 as
	Peptide-N-glycanases and DNA repair proteins, Xp-C/Rad4, are, respectively, active and inactivated enzymes sharing a common transglutaminase fold [My Copy] Hum. Mol. Genet., Vol. 10, No. 16. (1 Aug 2001), pp. 1627-1630. by Vivek Anantharaman, Eugene V. Koonin, L. Aravind posted to repair inactive fold evolution enzyme aravind by robfsouza on 2009-09-18 21:34:14 as
	Comparative genomics, evolution and origins of the nuclear envelope and nuclear pore complex. [My Copy] Cell Cycle, Vol. 3, No. 12. (Dec 2004), pp. 1612-1637. by Ben J. Mans, Vivek Anantharaman, L. Aravind, Eugene V. Koonin posted to nuclear_pore_complex inactive genomic_analysis evolution eukaryote enzyme comparative chromosome chromatin aravind by robfsouza on 2009-09-13 02:00:31 as
	Trends in protein evolution inferred from sequence and structure analysis [My Copy] Current Opinion in Structural Biology, Vol. 12, No. 3. (1 Jun 2002), pp. 392-399. by L. Aravind posted to structure protein inactive fold family evolution enzyme aravind by robfsouza on 2009-09-03 03:17:37 as
	Emergence of diverse biochemical activities in evolutionarily conserved structural scaffolds of proteins [My Copy] Current Opinion in Chemical Biology, Vol. 7, No. 1. (February 2003), pp. 12-20. by V. Anantharaman posted to protein inactive family evolution enzyme aravind by robfsouza on 2009-09-02 04:11:36 as
	Sequence and Structural Differences between Enzyme and Nonenzyme Homologs [My Copy] Structure, Vol. 10, No. 10. (Oct 2002), pp. 1435-1451. by A. Todd, C. Orengo, J. Thornton posted to inactive evolution enzyme by robfsouza on 2009-08-31 23:42:53 as
	Origin and evolution of DNA topoisomerases [My Copy] Biochimie, Vol. 89, No. 4. (Apr 2007), pp. 427-446. by P. Forterre, S. Gribaldo, D. Gadelle, M. Serre posted to topoisomerase protein family evolution enzyme dna classification chromosome chromatin by robfsouza on 2009-08-24 22:56:00 as
	A superfamily of archaeal, bacterial, and eukaryotic proteins homologous to animal transglutaminases [My Copy] PRS, Vol. 8, No. 08. (1999), pp. 1714-1719. by Kira S. Makarova, L. Aravind, Eugene V. Koonin posted to transglutaminase superfamily protein inactive enzyme aravind by robfsouza on 2009-08-20 22:47:02 as
	Comparative genomics and evolution of proteins involved in RNA metabolism [My Copy] Nucl. Acids Res., Vol. 30, No. 7. (1 Apr 2002), pp. 1427-1464. by Vivek Anantharaman, Eugene V. Koonin, L. Aravind posted to rna protein metabolism inactive genome evolution enzyme comparative aravind by robfsouza on 2009-08-20 22:34:24 as
	An Evolutionary Classification of the Metallo-\\ss-Lactamase Fold Proteins [My Copy] In Silico Biology, Vol. 1, No. 2. (1 Jan 1999), pp. 69-91. by L. Aravind posted to superfamily protein inactive fold evolutionary evolution enzyme classification carbohydrate binding aravind by robfsouza on 2009-08-20 22:29:53 as
	Conserved domains in DNA repair proteins and evolution of repair systems [My Copy] Nucl. Acids Res., Vol. 27, No. 5. (1 Mar 1999), pp. 1223-1242. by L. Aravind, D. R. Walker, E. V. Koonin posted to replication repair recombination protein inactive evolution enzyme domain dna aravind by robfsouza on 2009-08-12 20:41:10 as along with 1 person medic0747
	The AAA+ superfamily of functionally diverse proteins [My Copy] Genome Biol, Vol. 9, No. 4. (30 Apr 2008), 216. by Jamie Snider, Guillaume Thibault, Walid Houry posted to superfamily protein ntpase fold evolution enzyme atpase by robfsouza on 2009-08-11 21:02:39 as
	Type II restriction endonuclease R.KpnI is a member of the HNH nuclease superfamily [My Copy] Nucl. Acids Res., Vol. 32, No. 20. (23 Nov 2004), pp. 6129-6135. by Matheshwaran Saravanan, Janusz M. Bujnicki, Iwona A. Cymerman, Desirazu N. Rao, Valakunja Nagaraja posted to endonuclease enzyme fold homology protein restriction structure superfamily by robfsouza on 2009-08-07 01:08:43 as
	SURVEY AND SUMMARY: Holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories [My Copy] Nucl. Acids Res., Vol. 28, No. 18. (15 Sep 2000), pp. 3417-3432. by L. Aravind, Kira S. Makarova, Eugene V. Koonin posted to superfamily resolvases protein inactive evolution enzyme endonuclease classification aravind by robfsouza on 2009-08-06 23:58:06 as along with 1 person johanviklund
	Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses [My Copy] Nucl. Acids Res., Vol. 36, No. 11. (1 Jun 2008), pp. 3552-3569. by Jerzy Orlowski, Janusz M. Bujnicki posted to analysis chromatin classification endonuclease enzyme evolution fold prediction recombination restriction sequence superfamily by robfsouza on 2009-08-06 23:55:35 as

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protein	154
evolution	143
aravind	65
sequence	62
enzyme	56
inactive	53
structure	50
gene	43
fold	39
indel	35
length	33
network	32
interaction	31
molecular	31
genome	30
domain	29
complexity	28
biological	27
chromatin	27
dna	27
low	24
transcription	24
superfamily	23
alignment	22
binding	22
proteins	21
regulation	21
repeats	21
acid	19
animals	19
phylogeny	19
genetic	18
mutation	18
virus	18
classification	17
amino	16
models	16
selection	15
humans	14
recombination	14
chromosome	13
database	13
family	13
analysis	12
bioinformatics	12
codon	12
genetics	12
elements	11
eukaryote	11
homopeptide	11
method	11
prokaryotes	11
atpase	10
cell	10
complex	9
expression	9
bias	8
data	8
replication	8
tertiary	8
bacteria	7
biology	7
carbohydrate	7
computational	7
conformation	7
conserved	7
correlation	7
development	7
disease	7
duplication	7
homology	7
rna	7
signal	7
annotation	6
assembly	6
comparative	6
composition	6
division	6
mobile	6
ntpase	6
signaling	6
transduction	6
ubiquitin	6
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bacterial	5
contact	5
evolutionary	5
factor	5
female	5
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human	5
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interolog	5
motifs	5
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repair	5
saccharomyces	5
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adaptation	4
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cerevisiae	4
coevolution	4
escherichia	4
fungal	4
genomics	4
horizontal	4
large	4
modification	4
phenotype	4
phylogenomics	4
polymerase	4
rate	4
review	4
rhodopsin	4
scale	4
segregation	4
simulation	4
site	4
transfer	4
variation	4
coli	3
compensatory	3
computer	3
databases	3
dataset	3
disordered	3
domains	3
endonuclease	3
enzymes	3
evodevo	3
factors	3
folding	3
frames	3
inference	3
intrinsically	3
kinase	3
level	3
male	3
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nucleic	3
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acetylation	2
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notch	1
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robustness	1
rotifera	1
r-package	1
rrna	1
self-organization	1
single-stranded	1
sirna	1
site-directed	1
skates	1
small	1
somatic	1
speciation	1
splicing	1
stability	1
states	1
static	1
statistical	1
steroid	1
stoichiometry	1
strand	1
stress	1
suchard	1
suppressor	1
synechococcus	1
synteny	1
synthetic	1
technology	1
telomere	1
temperature	1
terminal	1
theorem	1
topology	1
transglutaminase	1
transposases	1
tree	1
tutorial	1
uncertainty	1
vertebrates	1
vesicular	1
videos	1
yeast	1
zinc-finger	1

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