robfsouza's evolution [116 articles] Export

Recent papers added to robfsouza's library classified by the tag evolution. You can also see everyone's evolution.

	Comprehensive Multigene Phylogenies of Excavate Protists Reveal the Evolutionary Positions of "Primitive" Eukaryotes [My Copy] Mol Biol Evol, Vol. 23, No. 3. (1 March 2006), pp. 615-625. by Alastair G. B. Simpson, Yuji Inagaki, Andrew J. Roger posted to protozoa phylogeny phylogenomics evolution eukaryote by robfsouza on 2009-10-17 02:24:53 as
	The 10,000 Year Explosion: How Civilization Accelerated Human Evolution [My Copy] (26 January 2009) by Gregory Cochran, Henry Harpending posted to human evolution by robfsouza on 2009-10-05 03:57:17 as
	'God vs. Science - A debate between Richard Dawkins and Francis Collins' by TIME Magazine - RichardDawkins.net [My Copy] by Richard Dawkins, Francis Collins posted to religion phylosophy evolution debate by robfsouza on 2009-10-01 16:37:23 as
	Inactive Enzyme-homologues Find New Function in Regulatory Processes [My Copy] Journal of Molecular Biology, Vol. 340, No. 3. (09 July 2004), pp. 399-404. by Birgit Pils, Jörg Schultz posted to protein inactive fold evolution enzyme by robfsouza on 2009-09-30 00:55:50 as along with 3 people tny jwm Jporci
	Protein sectors: evolutionary units of three-dimensional structure. [My Copy] Cell, Vol. 138, No. 4. (21 August 2009), pp. 774-786. by Najeeb Halabi, Olivier Rivoire, Stanislas Leibler, Rama Ranganathan posted to structure protein interaction fold evolution correlation contact compensatory coevolution by robfsouza on 2009-09-23 19:49:40 as along with 10 people and 1 group yyfwuhan cmzmasek dgront pansapiens pablocarb vvoorr biomcgary dayjm jwm jbhiatt Marcotte_Lab
	Assembly reflects evolution of protein complexes. [My Copy] Nature, Vol. 453, No. 7199. (26 June 2008), pp. 1262-1265. by E. D. Levy, E. Boeri Erba, C. V. Robinson, S. A. Teichmann posted to topology structure quaternary protein oligomer mass_spectometry interaction inactive homomer fold experimental evolution complex assembly by robfsouza on 2009-09-23 19:27:54 as along with 11 people and 1 group chica noraziz chad_davis psique marck paulschlesinger neils jwm zwang faion phoenixzxl KeatingJClub
	Resurrecting the Ancestral Enzymatic Role of a Modulatory Subunit [My Copy] Journal of Biological Chemistry, Vol. 280, No. 11. (18 March 2005), pp. 10189-10195. by Miguel A. Ballicora, Jennifer R. Dubay, Claire H. Devillers, Jack Preiss posted to reconstruction inactive evolution enzyme domain character ancestral by robfsouza on 2009-09-21 16:50:34 as along with 2 people and 1 group matzke nknii TCR_Signaling
	Protein content of minimal and ancestral ribosome [My Copy] RNA, Vol. 11, No. 9. (September 2005), pp. 1400-1406. by Arcady Mushegian posted to ribosome protein evolution ancestral by robfsouza on 2009-09-18 23:49:45 as
	Apoptotic Molecular Machinery: Vastly Increased Complexity in Vertebrates Revealed by Genome Comparisons [My Copy] Science, Vol. 291, No. 5507. (16 February 2001), pp. 1279-1284. by L. Aravind, Vishva M. Dixit, Eugene V. Koonin posted to vertebrates inactive evolution enzyme aravind apoptosis by robfsouza on 2009-09-18 23:28:19 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	Phosphoesterase domains associated with DNA polymerases of diverse origins [My Copy] Nucl. Acids Res., Vol. 26, No. 16. (15 August 1998), pp. 3746-3752. by L. Aravind, E. V. Koonin posted to polymerase inactive evolution enzyme dna aravind by robfsouza on 2009-09-18 23:27:35 as
	Eukaryote-specific Domains in Translation Initiation Factors: Implications for Translation Regulation and Evolution of the Translation System [My Copy] Genome Research, Vol. 10, No. 8. (1 August 2000), pp. 1172-1184. by L. Aravind, Eugene V. Koonin posted to translation regulation inactive factor evolution eukaryote enzyme aravind by robfsouza on 2009-09-18 23:20:10 as
	Differential Action of Natural Selection on the N and C-terminal Domains of 2′-5′ Oligoadenylate Synthetases and the Potential Nuclease Function of the C-terminal Domain [My Copy] Journal of Molecular Biology, Vol. 326, No. 5. (07 March 2003), pp. 1449-1461. by Igor B. Rogozin, L. Aravind, Eugene V. Koonin posted to selection inactive evolution enzyme aravind by robfsouza on 2009-09-18 23:15:11 as
	Comparative Genomics of Protists: New Insights into the Evolution of Eukaryotic Signal Transduction and Gene Regulation* [My Copy] Annual Review of Microbiology, Vol. 61, No. 1. (2007), pp. 453-475. by Vivek Anantharaman, Lakshminarayan M. Iyer, L. Aravind posted to transduction signal regulation inactive gene expression evolution enzyme aravind by robfsouza on 2009-09-18 22:56:09 as along with 1 person cmzmasek
	Evolutionary Genomics of the HAD Superfamily: Understanding the Structural Adaptations and Catalytic Diversity in a Superfamily of Phosphoesterases and Allied Enzymes [My Copy] Journal of Molecular Biology, Vol. 361, No. 5. (01 September 2006), pp. 1003-1034. by A. Maxwell Burroughs, Karen N. Allen, Debra Dunaway-Mariano, L. Aravind posted to superfamily protein inactive fold evolution enzyme aravind by robfsouza on 2009-09-18 22:54:02 as along with 2 people tny christiw
	DNA polymerase beta-like nucleotidyltransferase superfamily: identification of three new families, classification and evolutionary history [My Copy] Nucl. Acids Res., Vol. 27, No. 7. (1 April 1999), pp. 1609-1618. by L. Aravind, E. V. Koonin posted to superfamily polymerase inactive evolution enzyme dna aravind by robfsouza on 2009-09-18 22:48:32 as
	The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like beta-grasp domains [My Copy] Genome Biology, Vol. 7, No. 7. (19 July 2006), R60. by Lakshminarayan Iyer, A. Maxwell Burroughs, L. Aravind posted to ubiquitin protein prokaryotes inactive fold evolution enzyme aravind by robfsouza on 2009-09-18 22:43:56 as
	Adhesion Molecules and Other Secreted Host‐Interaction Determinants in Apicomplexa: Insights from Comparative Genomics [My Copy] International Review of Cytology, Vol. 262 (2007), pp. 1-74. by V. Anantharaman, L. Iyer, S. Balaji, L. Aravind posted to inactive genomics evolution enzyme comparative aravind adhesion by robfsouza on 2009-09-18 22:28:41 as
	The many faces of the helix-turn-helix domain: Transcription regulation and beyond⋆ [My Copy] FEMS Microbiology Reviews, Vol. 29, No. 2. (2005), pp. 231-262. by L. Aravind, Vivek Anantharaman, Santhanam Balaji, Mohan M. Babu, Lakshminarayan M. Iyer posted to transcription protein inactive fold evolution enzyme domain aravind by robfsouza on 2009-09-18 22:22:35 as
	Evolution and Classification of P-loop Kinases and Related Proteins☆ [My Copy] Journal of Molecular Biology, Vol. 333, No. 4. (31 October 2003), pp. 781-815. by Detlef D. Leipe, Eugene V. Koonin, L. Aravind posted to protein kinase inactive fold evolution enzyme aravind by robfsouza on 2009-09-18 22:17:14 as along with 1 person tny
	Detection of novel members, structure-function analysis and evolutionary classification of the 2H phosphoesterase superfamily [My Copy] Nucl. Acids Res., Vol. 30, No. 23. (1 December 2002), pp. 5229-5243. by Raja Mazumder, Lakshminarayan M. Iyer, Sona Vasudevan, L. Aravind posted to protein inactive fold evolution enzyme aravind by robfsouza on 2009-09-18 22:09:37 as along with 1 person and 1 group lilith 8_01
	Themis is a member of a new metazoan gene family and is required for the completion of thymocyte positive selection [My Copy] Nature Immunology, Vol. 10, No. 8. (13 July 2009), pp. 831-839. by Andy L. Johnson, L. Aravind, Natalia Shulzhenko, et al.Andre Morgun, See-Young Choi, Tanya L. Crockford, Teresa Lambe, Heather Domaschenz, Edyta M. Kucharska, Lixin Zheng, Carola G. Vinuesa, Michael J. Lenardo, Christopher C. Goodnow, Richard J. Cornall, Ronald H. Schwartz posted to protein inactive fold evolution enzyme domain aravind by robfsouza on 2009-09-18 22:05:45 as along with 1 person leliavski
	Small but versatile: the extraordinary functional and structural diversity of the beta-grasp fold [My Copy] Biology Direct, Vol. 2, No. 1. (02 July 2007), 18. by A. Maxwell Burroughs, S. Balaji, Lakshminarayan Iyer, L. Aravind posted to protein inactive fold evolution enzyme domain aravind by robfsouza on 2009-09-18 22:00:49 as
	The signaling helix: a common functional theme in diverse signaling proteins [My Copy] Biology Direct, Vol. 1, No. 1. (05 September 2006), 25. by Vivek Anantharaman, S. Balaji, L. Aravind posted to signaling protein inactive fold evolution enzyme aravind by robfsouza on 2009-09-18 21:58:51 as along with 1 person choonpeng
	Analysis of DBC1 and its homologs suggests a potential mechanism for regulation of sirtuin domain deacetylases by NAD metabolites. [My Copy] Cell cycle (Georgetown, Tex.), Vol. 7, No. 10. (15 May 2008), pp. 1467-1472. by Vivek Anantharaman, L. Aravind posted to protein inactive fold evolution enzyme domain aravind acetylation by robfsouza on 2009-09-18 21:38:46 as
	Classification of the caspase-hemoglobinase fold: Detection of new families and implications for the origin of the eukaryotic separins [My Copy] Proteins: Structure, Function, and Genetics, Vol. 46, No. 4. (2002), pp. 355-367. by L. Aravind, Eugene V. Koonin posted to protease inactive fold evolution enzyme aravind by robfsouza on 2009-09-18 21:36:22 as
	Peptide-N-glycanases and DNA repair proteins, Xp-C/Rad4, are, respectively, active and inactivated enzymes sharing a common transglutaminase fold [My Copy] Hum. Mol. Genet., Vol. 10, No. 16. (1 August 2001), pp. 1627-1630. by Vivek Anantharaman, Eugene V. Koonin, L. Aravind posted to repair inactive fold evolution enzyme aravind by robfsouza on 2009-09-18 21:34:14 as
	Virus evolution: how far does the double \|[beta]\|-barrel viral lineage extend? [My Copy] Nat Rev Micro, Vol. 6, No. 12. (01 December 2008), pp. 941-948. by Mart Krupovic, Dennis H. Bamford posted to virus structure fold evolution capsid by robfsouza on 2009-09-15 20:26:47 as along with 1 person Terkko
	Comparative genomics, evolution and origins of the nuclear envelope and nuclear pore complex. [My Copy] Cell cycle (Georgetown, Tex.), Vol. 3, No. 12. (December 2004), pp. 1612-1637. by Ben J. Mans, Vivek Anantharaman, L. Aravind, Eugene V. Koonin posted to nuclear_pore_complex inactive genomic_analysis evolution eukaryote enzyme comparative chromosome chromatin aravind by robfsouza on 2009-09-13 02:00:31 as
	The NYN domains: novel predicted RNAses with a PIN domain-like fold. [My Copy] RNA biology, Vol. 3, No. 1. (r 2006), pp. 18-27. by Vivek Anantharaman, L. Aravind posted to superfamily rnase rna replication recombination fold family evolution domain aravind by robfsouza on 2009-09-04 17:08:43 as
	Trends in protein evolution inferred from sequence and structure analysis [My Copy] Current Opinion in Structural Biology, Vol. 12, No. 3. (1 June 2002), pp. 392-399. by L. Aravind posted to structure protein inactive fold family evolution enzyme aravind by robfsouza on 2009-09-03 03:17:37 as
	Peeling the Onion: Ribosomes are Ancient Molecular Fossils [My Copy] Mol Biol Evol (23 July 2009), msp163. by Chiaolong Hsiao, Srividya Mohan, Benson K. Kalahar, Loren D. Williams posted to ribosome protein origin inactive evolution by robfsouza on 2009-09-02 23:11:59 as
	Emergence of diverse biochemical activities in evolutionarily conserved structural scaffolds of proteins [My Copy] Current Opinion in Chemical Biology, Vol. 7, No. 1. (February 2003), pp. 12-20. by V. Anantharaman posted to protein inactive family evolution enzyme aravind by robfsouza on 2009-09-02 04:11:36 as
	Sequence and Structural Differences between Enzyme and Nonenzyme Homologs [My Copy] Structure, Vol. 10, No. 10. (October 2002), pp. 1435-1451. by A. Todd, C. Orengo, J. Thornton posted to inactive evolution enzyme by robfsouza on 2009-08-31 23:42:53 as
	Evidence for an early prokaryotic endosymbiosis. [My Copy] Nature, Vol. 460, No. 7258. (20 August 2009), pp. 967-971. by James A. Lake posted to prokaryotes origin hypothesis evolution endosymbiosis by robfsouza on 2009-08-31 19:57:57 as along with 5 people and 1 group cmzmasek cambray neils behindtherabbit djkt iSEEM
	MutL homologs in restriction-modification systems and the origin of eukaryotic MORC ATPases [My Copy] Biology Direct, Vol. 3, No. 1. (17 March 2008), 8. by Lakshminarayan Iyer, Saraswathi Abhiman, L. Aravind posted to topoisomerase restriction replication protein meiosis histone family evolution classification atpase aravind by robfsouza on 2009-08-31 17:28:31 as
	Classification and evolutionary history of the single-strand annealing proteins, RecT, Redbeta, ERF and RAD52 [My Copy] BMC Genomics, Vol. 3, No. 1. (2002), 8. by Lakshminarayan Iyer, Eugene Koonin, L. Aravind posted to strand single protein family evolution domain dna classification chromatin borrelia binding aravind by robfsouza on 2009-08-29 00:36:09 as
	The Anabaena sensory rhodopsin transducer defines a novel superfamily of prokaryotic small-molecule binding domains [My Copy] Biology Direct, Vol. 4, No. 1. (14 August 2009), 25. by Robson De Souza, Lakshminarayan Iyer, L. Aravind posted to rhodopsin protein family evolution domain bacteria aravind by robfsouza on 2009-08-26 21:13:49 as
	Toprim--a conserved catalytic domain in type IA and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins [My Copy] Nucl. Acids Res., Vol. 26, No. 18. (15 September 1998), pp. 4205-4213. by L. Aravind, D. D. Leipe, E. V. Koonin posted to topoisomerase superfamily replication protein family evolution domain dns chromosome chromatin atpase aravind by robfsouza on 2009-08-25 20:08:21 as
	Origin and evolution of DNA topoisomerases [My Copy] Biochimie, Vol. 89, No. 4. (April 2007), pp. 427-446. by P. Forterre, S. Gribaldo, D. Gadelle, M. Serre posted to topoisomerase protein family evolution enzyme dna classification chromosome chromatin by robfsouza on 2009-08-24 22:56:00 as
	Comparative genomics and evolution of proteins involved in RNA metabolism [My Copy] Nucl. Acids Res., Vol. 30, No. 7. (1 April 2002), pp. 1427-1464. by Vivek Anantharaman, Eugene V. Koonin, L. Aravind posted to rna protein metabolism inactive genome evolution enzyme comparative aravind by robfsouza on 2009-08-20 22:34:24 as
	An Evolutionary Classification of the Metallo-ß-Lactamase Fold Proteins [My Copy] In Silico Biology, Vol. 1, No. 2. (1 January 1999), pp. 69-91. by L. Aravind posted to superfamily protein inactive fold evolutionary evolution enzyme classification carbohydrate binding aravind by robfsouza on 2009-08-20 22:29:53 as
	Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization [My Copy] Nat Genet, Vol. 41, No. 4. (01 March 2009), pp. 438-445. by Yair Field, Yvonne Fondufe-Mittendorf, Irene K. Moore, et al.Piotr Mieczkowski, Noam Kaplan, Yaniv Lubling, Jason D. Lieb, Jonathan Widom, Eran Segal posted to transcription regulation gene expression evolution divergence chromosome chromatin by robfsouza on 2009-08-13 02:53:30 as along with 10 people and 1 group aprickett daveGerrard TRHvidsten siebert athma clearbluespring lp2 fenghezi djkt provero BergmanLab
	Fitness and its role in evolutionary genetics [My Copy] Nat Rev Genet, Vol. 10, No. 8. (23 August 2009), pp. 531-539. by H. Allen Orr posted to genetic selection review fitness evolutionary evolution by robfsouza on 2009-08-12 22:42:21 as along with 15 people and 1 group CulCog PabloMarin Zephyrus xingxu pkonings gwallau leliavski natstreet shikin Annab psique ppgardne druvus leemond31 nuin Journal picks
	Comparative embryology without a microscope: using genomic approaches to understand the evolution of development [My Copy] Journal of Biology, Vol. 8, No. 7. (2009), 65. by David Garfield, Gregory Wray posted to eukaryote genome evolution evodevo embryology development comparative by robfsouza on 2009-08-12 21:31:02 as
	Conserved domains in DNA repair proteins and evolution of repair systems [My Copy] Nucl. Acids Res., Vol. 27, No. 5. (1 March 1999), pp. 1223-1242. by L. Aravind, D. R. Walker, E. V. Koonin posted to replication repair recombination protein inactive evolution enzyme domain dna aravind by robfsouza on 2009-08-12 20:41:10 as along with 1 person medic0747
	The AAA+ superfamily of functionally diverse proteins [My Copy] Genome Biology, Vol. 9, No. 4. (30 April 2008), 216. by Jamie Snider, Guillaume Thibault, Walid Houry posted to superfamily protein ntpase fold evolution enzyme atpase by robfsouza on 2009-08-11 21:02:39 as
	SURVEY AND SUMMARY: Holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories [My Copy] Nucl. Acids Res., Vol. 28, No. 18. (15 September 2000), pp. 3417-3432. by L. Aravind, Kira S. Makarova, Eugene V. Koonin posted to superfamily resolvases protein inactive evolution enzyme endonuclease classification aravind by robfsouza on 2009-08-06 23:58:06 as along with 1 person johanviklund
	Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses [My Copy] Nucl. Acids Res., Vol. 36, No. 11. (1 June 2008), pp. 3552-3569. by Jerzy Orlowski, Janusz M. Bujnicki posted to analysis chromatin classification endonuclease enzyme evolution fold prediction recombination restriction sequence superfamily by robfsouza on 2009-08-06 23:55:35 as
	The many faces of the helix-turn-helix domain: transcription regulation and beyond. [My Copy] FEMS microbiology reviews, Vol. 29, No. 2. (April 2005), pp. 231-262. by L. Aravind, Vivek Anantharaman, Santhanam Balaji, Mohan M. Babu, Lakshminarayan M. Iyer posted to aravind domain evolution protein transcription by robfsouza on 2009-08-05 22:09:02 as along with 1 person cjeans
	The structural role of the zinc ion can be dispensable in prokaryotic zinc-finger domains [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 17. (28 April 2009), pp. 6933-6938. by Ilaria Baglivo, Luigi Russo, Sabrina Esposito, et al.Gaetano Malgieri, Mario Renda, Antonio Salluzzo, Benedetto Di Blasio, Carla Isernia, Roberto Fattorusso, Paolo V. Pedone posted to domain evolution gene horizontal prokaryotes protein transfer zinc-finger by robfsouza on 2009-08-05 17:20:20 as

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protein	133
evolution	116
aravind	64
enzyme	53
inactive	51
structure	39
fold	38
sequence	37
indel	35
gene	33
length	33
network	32
complexity	28
interaction	28
chromatin	27
domain	27
low	24
biological	23
superfamily	23
transcription	22
dna	21
repeats	21
genome	20
regulation	18
virus	18
classification	16
binding	14
database	13
alignment	12
chromosome	12
homopeptide	11
prokaryotes	11
recombination	11
atpase	10
bioinformatics	10
codon	10
eukaryote	10
method	10
complex	9
family	9
bias	8
elements	8
mutation	8
replication	8
carbohydrate	7
cell	7
correlation	7
development	7
annotation	6
assembly	6
comparative	6
composition	6
disease	6
division	6
duplication	6
mobile	6
ntpase	6
selection	6
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evolutionary	5
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histone	5
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coevolution	4
factor	4
large	4
modification	4
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rate	4
repair	4
review	4
scale	4
segregation	4
signal	4
signaling	4
ubiquitin	4
architecture	3
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dataset	3
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endonuclease	3
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rhodopsin	3
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science	3
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exon	2
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horizontal	2
kinase	2
loss	2
mcmc	2
meiosis	2
methylation	2
neurobiology	2
ontology	2
p-loop	2
proteomics	2
receptor	2
ribosome	2
shuffling	2
substitution	2
tol	2
transfer	2
translation	2
aaa	1
accuracy	1
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character	1
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religion	1
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transglutaminase	1
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tree	1
tutorial	1
ubiquitination	1
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videos	1
yeast	1
zinc-finger	1

robfsouza's evolution [116 articles] Export

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