robfsouza's evolution [143 articles] Export

Recent papers added to robfsouza's library classified by the tag evolution. You can also see everyone's evolution.

	Evolution by leaps: gene duplication in bacteria [My Copy] Biology Direct, Vol. 4, No. 1. (2009), 46. by Margrethe Serres, Alastair Kerr, Thomas McCormack, Monica Riley posted to protein inactive evolution enzyme by robfsouza on 2009-11-24 18:04:05 as
	Low conservation of gene content in the Drosophila Y chromosome [My Copy] Nature, Vol. 456, No. 7224. (Dec 2008), pp. 949-51. by Leonardo B. Koerich, Xiaoyun Wang, Andrew G. Clark, Antonio B. Carvalho posted to synteny sequence phylogeny molecular melanogaster linkage insect genetics genes evolution drosophila conserved chromosome animals by robfsouza on 2009-11-24 15:17:16 as
	Neutral and adaptive variation in gene expression [My Copy] Proc Natl Acad Sci USA, Vol. 103, No. 14. (Apr 2006), pp. 5425-30. by Andrew Whitehead, Douglas L. Crawford posted to variation states sequence population oligonucleotide humans genetics genetic gene fishes expression evolution array animals analysis by robfsouza on 2009-11-24 15:17:15 as
	Selectionism and neutralism in molecular evolution [My Copy] Mol Biol Evol, Vol. 22, No. 12. (Dec 2005), pp. 2318-42. by Masatoshi Nei posted to variation selection polymorphism phylogeny phenotype mutation multigene molecular genetics genetic gene family expression evolution animals by robfsouza on 2009-11-24 15:17:15 as
	Alignment uncertainty and genomic analysis [My Copy] Science, Vol. 319, No. 5862. (Jan 2008), pp. 473-6. by Karen M. Wong, Marc A. Suchard, John P. Huelsenbeck posted to uncertainty statistical software sequence selection saccharomyces reading phylogeny open monte molecular models method genomics genome genetics fungal frames evolution computational biology amino alignment algorithms acid by robfsouza on 2009-11-24 15:17:15 as
	The hidden universal distribution of amino acid biosynthetic networks: a genomic perspective on their origins and evolution [My Copy] Genome Biol, Vol. 9, No. 6. (Jan 2008) by Georgina Hernández-Montes, Javier J. D'iaz-Mej'ia, Ernesto Pérez-Rueda, Lorenzo Segovia posted to pathways humans evolution enzymes biosynthetic animals amino by robfsouza on 2009-11-24 15:17:15 as
	Prospects for inferring very large phylogenies by using the neighbor-joining method [My Copy] Proc Natl Acad Sci USA, Vol. 101, No. 30. (Jul 2004), pp. 11030-5. by Koichiro Tamura, Masatoshi Nei, Sudhir Kumar posted to simulation results reproducibility phylogeny multigene molecular models genetic family evolution computer biological by robfsouza on 2009-11-24 15:17:14 as
	The evolution of genome compression and genomic novelty in RNA viruses [My Copy] Genome Research, Vol. 17, No. 10. (Oct 2007), pp. 1496-504. by Robert Belshaw, Oliver G. Pybus, Andrew Rambaut posted to viruses viral rna ribosomal reading overlapping open mutation molecular models genome genetic genes frameshift frames evolution by robfsouza on 2009-11-24 15:17:14 as
	Protein meta-functional signatures from combining sequence, structure, evolution, and amino acid property information [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (Jan 2008) by Kai Wang, Jeremy A. Horst, Gong Cheng, David C. Nickle, Ram Samudrala posted to thermodynamics tertiary structure site-directed simulation sequence regression proteins protein ornithine mutagenesis motifs molecular models interaction genetic evolution domains decarboxylase databases conserved computer computational cellulose biology binding bacterial analysis amino alignment acid 14-beta-cellobiosidase by robfsouza on 2009-11-24 15:17:12 as
	Evolution of hormone-receptor complexity by molecular exploitation [My Copy] Science, Vol. 312, No. 5770. (Apr 2006), pp. 97-101. by Jamie T. Bridgham, Sean M. Carroll, Joseph W. Thornton posted to theorem substitution steroid skates rats phylogeny mutation molecular mineralocorticoid ligands lampreys hydrocortisone hagfishes glucocorticoid gene fish evolution duplication desoxycorticosterone binding bayes animals amino aldosterone acid by robfsouza on 2009-11-24 15:17:12 as
	Phylogenetic profiles reveal evolutionary relationships within the "twilight zone" of sequence similarity [My Copy] Proc Natl Acad Sci USA, Vol. 105, No. 36. (Sep 2008), pp. 13474-9. by Gue S. Chang, Yoojin Hong, Kyung D. Ko, et al.Gaurav Bhardwaj, Edward C. Holmes, Randen L. Patterson, Damian B. van Rossum posted to sequence phylogeny molecular homology evolution computational biology by robfsouza on 2009-11-24 15:17:12 as
	Emergence of diverse biochemical activities in evolutionarily conserved structural scaffolds of proteins [My Copy] Current Opinion in Chemical Biology, Vol. 7, No. 1. (Feb 2003), pp. 12-20. by Vivek Anantharaman, L. Aravind, Eugene V. Koonin posted to tertiary structure structural sequence proteins protein molecular inactive homology family evolution enzymes enzyme conserved catalysis aravind by robfsouza on 2009-11-24 15:17:11 as
	Evolutionary patterns in prokaryotic genomes [My Copy] Curr Opin Microbiol, Vol. 11, No. 5. (Oct 2008), pp. 454-60. by Eduardo P. Rocha posted to selection recombination mutation molecular genetics genetic evolution biological bacteria adaptation by robfsouza on 2009-11-24 15:17:11 as
	Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment? [My Copy] BMC Evol Biol, Vol. 8 (Jan 2008) by Stefanie Hartmann, Todd J. Vision posted to software sequence protein phylogeny molecular models likelihood genetic expressed evolution computational biology analysis alignment by robfsouza on 2009-11-24 15:17:10 as
	Evolution of taxis responses in virtual bacteria: non-adaptive dynamics [My Copy] PLoS Comput Biol, Vol. 4, No. 5. (May 2008) by Richard A. Goldstein, Orkun S. Soyer posted to simulation proteins physiological phenomena models mechanotransduction evolution computer chemotaxis cellular biological bacterial adaptation by robfsouza on 2009-11-24 15:17:10 as
	Loss of genes implicated in gastric function during platypus evolution [My Copy] Genome Biol, Vol. 9, No. 5. (Jan 2008) by Gonzalo R. Ordoñez, Ladeana W. Hillier, Wesley C. Warren, Frank Grützner, Carlos López-Ot'in, Xose S. Puente posted to silencing platypus pepsin molecular gene gastric evolution deletion animals acid a by robfsouza on 2009-11-24 15:17:10 as
	The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans [My Copy] Nature, Vol. 451, No. 7180. (Feb 2008), pp. 783-8. by Nicole King, M. Jody Westbrook, Susan L. Young, et al.Alan Kuo, Monika Abedin, Jarrod Chapman, Stephen Fairclough, Uffe Hellsten, Yoh Isogai, Ivica Letunic, Michael Marr, David Pincus, Nicholas Putnam, Antonis Rokas, Kevin J. Wright, Richard Zuzow, William Dirks, Matthew Good, David Goodstein, Derek Lemons, Wanqing Li, Jessica B. Lyons, Andrea Morris, Scott Nichols, Daniel J. Richter, Asaf Salamov, J. G. I. Sequencing, Peer Bork, Wendell A. Lim, Gerard Manning, W. Todd Miller, William McGinnis, Harris Shapiro, Robert Tjian, Igor V. Grigoriev, Daniel Rokhsar posted to transduction transcription tertiary structure speciation signal sequence regulation proteins protein phylogeny phosphotyrosine notch molecular matrix introns humans hedgehog genome genetic gene factors extracellular expression evolution eukaryotic conserved cells cell animals adhesion by robfsouza on 2009-11-24 15:17:10 as
	Assessing the evolutionary impact of amino acid mutations in the human genome [My Copy] PLoS Genet, Vol. 4, No. 5. (May 2008) by Adam R. Boyko, Scott H. Williamson, Amit R. Indap, et al.Jeremiah D. Degenhardt, Ryan D. Hernandez, Kirk E. Lohmueller, Mark D. Adams, Steffen Schmidt, John J. Sninsky, Shamil R. Sunyaev, Thomas J. White, Rasmus Nielsen, Andrew G. Clark, Carlos D. Bustamante posted to substitution selection population polymorphism pan nucleotide mutation molecular missense male humans human group genome genetics female evolution animals ancestry amino alleles acid by robfsouza on 2009-11-24 15:17:09 as
	Molecular signatures of ribosomal evolution [My Copy] Proc Natl Acad Sci USA, Vol. 105, No. 37. (Sep 2008), pp. 13953-8. by Elijah Roberts, Anurag Sethi, Jonathan Montoya, Carl R. Woese, Zaida Luthey-Schulten posted to tertiary structure structural sequence rna ribosomes ribosomal quaternary proteins protein phylogeny nucleic molecular models humans homology genome evolution data conformation biosynthesis animals acid by robfsouza on 2009-11-24 15:17:09 as
	Evolutionarily conserved pathways of energetic connectivity in protein families [My Copy] Science, Vol. 286, No. 5438. (Oct 1999), pp. 295-9. by S. W. Lockless, R. Ranganathan posted to thermodynamics tertiary structure statistics sequence recombinant proteins protein mutation molecular models fusion folding evolution conserved conformation binding amino alignment acid by robfsouza on 2009-11-24 15:17:09 as
	Adaptation in the env gene of HIV-1 and evolutionary theories of disease progression [My Copy] Mol Biol Evol, Vol. 20, No. 8. (Aug 2003), pp. 1318-25. by Scott Williamson posted to variation single-stranded protein progression polymorphism phylogeny molecular infections humans hiv-1 hiv gp120 genetic genes evolution envelope env disease by robfsouza on 2009-11-24 15:17:09 as
	Development and application of a phylogenomic toolkit: resolving the evolutionary history of Madagascar's lemurs [My Copy] Genome Research, Vol. 18, No. 3. (Mar 2008), pp. 489-99. by Julie E. Horvath, David W. Weisrock, Stephanie L. Embry, et al.Isabella Fiorentino, James P. Balhoff, Peter Kappeler, Gregory A. Wray, Huntington F. Willard, Anne D. Yoder posted to sequence reaction primers polymerase phylogeny molecular male lemur geography genomics female evolution dna data animals by robfsouza on 2009-11-24 15:17:09 as
	Phylogenetic evidence for deleterious mutation load in RNA viruses and its contribution to viral evolution [My Copy] Mol Biol Evol, Vol. 24, No. 3. (Mar 2007), pp. 845-52. by Oliver G. Pybus, Andrew Rambaut, Robert Belshaw, Robert P. Freckleton, Alexei J. Drummond, Edward C. Holmes posted to viruses sequence selection rna polymorphism phylogeny mutation molecular models likelihood genetics genetic evolution computational biology amino acid by robfsouza on 2009-11-24 15:17:09 as
	Gene conversion and purifying selection of a placenta-specific ERV-V envelope gene during simian evolution [My Copy] BMC Evol Biol, Vol. 8 (Jan 2008) by Anders L. Kjeldbjerg, Palle Villesen, Lars Aagaard, Finn S. Pedersen posted to viral terminal sequence selection retroviruses repeat reading proteins primates placenta open molecular humans human genome genetics gene frames female evolution envelope endogenous dna chromosomes animals analysis alignment by robfsouza on 2009-11-24 15:17:09 as
	Lasting impressions: motifs in protein-protein maps may provide footprints of evolutionary events [My Copy] Proc Natl Acad Sci USA, Vol. 102, No. 9. (Mar 2005), pp. 3173-4. by Jeremy J. Rice, Aaron Kershenbaum, Gustavo Stolovitzky posted to proteins motifs molecular evolution amino acid by robfsouza on 2009-11-24 15:17:09 as
	Molecular evolution of a primate-specific microRNA family [My Copy] Mol Biol Evol, Vol. 25, No. 7. (Jul 2008), pp. 1493-502. by Rui Zhang, Yin-Qiu Wang, Bing Su posted to sequence primates placenta phylogeny nucleic molecular micrornas humans female evolution data conformation animals alignment acid by robfsouza on 2009-11-24 15:17:08 as
	Comparative genomics and structural biology of the molecular innovations of eukaryotes [My Copy] Current Opinion in Structural Biology In Nucleic acids/Sequences and topology - Anna Marie Pyle and Jonathan Widom/Nick V Grishin and Sarah A Teichmann, Vol. 16, No. 3. (Jun 2006), pp. 409-419. by L. Aravind, L. Iyer, E. Koonin posted to protein ph fold evolution eukaryote domain architecture by robfsouza on 2009-11-19 20:53:54 as
	Comprehensive Multigene Phylogenies of Excavate Protists Reveal the Evolutionary Positions of "Primitive" Eukaryotes [My Copy] Mol Biol Evol, Vol. 23, No. 3. (1 Mar 2006), pp. 615-625. by Alastair G. B. Simpson, Yuji Inagaki, Andrew J. Roger posted to protozoa phylogeny phylogenomics evolution eukaryote by robfsouza on 2009-10-17 02:24:53 as
	The 10,000 Year Explosion: How Civilization Accelerated Human Evolution [My Copy] Book (26 Jan 2009) by Gregory Cochran, Henry Harpending posted to human evolution by robfsouza on 2009-10-05 03:57:17 as
	'God vs. Science - A debate between Richard Dawkins and Francis Collins' by TIME Magazine - RichardDawkins.net [My Copy] Miscellaneous by Richard Dawkins, Francis Collins posted to phylosophy evolution by robfsouza on 2009-10-01 16:37:23 as
	Inactive Enzyme-homologues Find New Function in Regulatory Processes [My Copy] Journal of Molecular Biology, Vol. 340, No. 3. (09 Jul 2004), pp. 399-404. by Birgit Pils, Jörg Schultz posted to protein inactive fold evolution enzyme by robfsouza on 2009-09-30 00:55:50 as along with 3 people tny jwm Jporci
	Protein sectors: evolutionary units of three-dimensional structure. [My Copy] Cell, Vol. 138, No. 4. (21 Aug 2009), pp. 774-786. by Najeeb Halabi, Olivier Rivoire, Stanislas Leibler, Rama Ranganathan posted to structure protein interaction fold evolution correlation contact compensatory coevolution by robfsouza on 2009-09-23 19:49:40 as along with 10 people and 1 group yyfwuhan cmzmasek dgront pansapiens pablocarb vvoorr biomcgary dayjm jwm jbhiatt Marcotte_Lab
	Assembly reflects evolution of protein complexes. [My Copy] Nature, Vol. 453, No. 7199. (26 Jun 2008), pp. 1262-1265. by E. D. Levy, E. Boeri Erba, C. V. Robinson, S. A. Teichmann posted to topology structure quaternary protein oligomer mass_spectometry interaction inactive homomer fold experimental evolution complex assembly by robfsouza on 2009-09-23 19:27:54 as along with 11 people and 1 group chica noraziz chad_davis psique marck paulschlesinger neils jwm zwang faion phoenixzxl KeatingJClub
	Resurrecting the Ancestral Enzymatic Role of a Modulatory Subunit [My Copy] Journal of Biological Chemistry, Vol. 280, No. 11. (18 Mar 2005), pp. 10189-10195. by Miguel A. Ballicora, Jennifer R. Dubay, Claire H. Devillers, Jack Preiss posted to reconstruction inactive evolution enzyme domain ancestral by robfsouza on 2009-09-21 16:50:34 as along with 2 people and 1 group matzke nknii TCR_Signaling
	Protein content of minimal and ancestral ribosome [My Copy] RNA, Vol. 11, No. 9. (Sep 2005), pp. 1400-1406. by Arcady Mushegian posted to ribosome protein evolution ancestral by robfsouza on 2009-09-18 23:49:45 as
	Apoptotic Molecular Machinery: Vastly Increased Complexity in Vertebrates Revealed by Genome Comparisons [My Copy] Science, Vol. 291, No. 5507. (16 Feb 2001), pp. 1279-1284. by L. Aravind, Vishva M. Dixit, Eugene V. Koonin posted to vertebrates inactive evolution enzyme aravind apoptosis by robfsouza on 2009-09-18 23:28:19 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	Phosphoesterase domains associated with DNA polymerases of diverse origins [My Copy] Nucl. Acids Res., Vol. 26, No. 16. (15 Aug 1998), pp. 3746-3752. by L. Aravind, E. V. Koonin posted to polymerase inactive evolution enzyme dna aravind by robfsouza on 2009-09-18 23:27:35 as
	Eukaryote-specific Domains in Translation Initiation Factors: Implications for Translation Regulation and Evolution of the Translation System [My Copy] Genome Research, Vol. 10, No. 8. (1 Aug 2000), pp. 1172-1184. by L. Aravind, Eugene V. Koonin posted to translation regulation inactive factor evolution eukaryote enzyme aravind by robfsouza on 2009-09-18 23:20:10 as
	Differential Action of Natural Selection on the N and C-terminal Domains of 2′-5′ Oligoadenylate Synthetases and the Potential Nuclease Function of the C-terminal Domain [My Copy] Journal of Molecular Biology, Vol. 326, No. 5. (07 Mar 2003), pp. 1449-1461. by Igor B. Rogozin, L. Aravind, Eugene V. Koonin posted to selection inactive evolution enzyme aravind by robfsouza on 2009-09-18 23:15:11 as
	Comparative Genomics of Protists: New Insights into the Evolution of Eukaryotic Signal Transduction and Gene Regulation* [My Copy] Annual Review of Microbiology, Vol. 61, No. 1. (2007), pp. 453-475. by Vivek Anantharaman, Lakshminarayan M. Iyer, L. Aravind posted to transduction signal regulation inactive gene expression evolution enzyme aravind by robfsouza on 2009-09-18 22:56:09 as along with 1 person cmzmasek
	Evolutionary genomics of the HAD superfamily: understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied enzymes. [My Copy] Journal of molecular biology, Vol. 361, No. 5. (1 Sep 2006), pp. 1003-1034. by A. Maxwell Burroughs, Karen N. Allen, Debra Dunaway-Mariano, L. Aravind posted to superfamily protein inactive fold evolution enzyme aravind by robfsouza on 2009-09-18 22:54:02 as along with 3 people martainn tny christiw
	DNA polymerase beta-like nucleotidyltransferase superfamily: identification of three new families, classification and evolutionary history [My Copy] Nucl. Acids Res., Vol. 27, No. 7. (1 Apr 1999), pp. 1609-1618. by L. Aravind, E. V. Koonin posted to superfamily polymerase inactive evolution enzyme dna aravind by robfsouza on 2009-09-18 22:48:32 as
	The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like beta-grasp domains [My Copy] Genome Biol, Vol. 7, No. 7. (19 Jul 2006), R60. by Lakshminarayan Iyer, A. Maxwell Burroughs, L. Aravind posted to ubiquitin protein prokaryotes inactive fold evolution enzyme aravind by robfsouza on 2009-09-18 22:43:56 as
	Adhesion Molecules and Other Secreted Host‐Interaction Determinants in Apicomplexa: Insights from Comparative Genomics [My Copy] International Review of Cytology, Vol. 262 (2007), pp. 1-74. by V. Anantharaman, L. Iyer, S. Balaji, L. Aravind posted to inactive genomics evolution enzyme comparative aravind adhesion by robfsouza on 2009-09-18 22:28:41 as
	The many faces of the helix-turn-helix domain: Transcription regulation and beyond\{\&\{\\#x22C6; [My Copy] FEMS Microbiology Reviews, Vol. 29, No. 2. (2005), pp. 231-262. by L. Aravind, Vivek Anantharaman, Santhanam Balaji, Mohan M. Babu, Lakshminarayan M. Iyer posted to transcription protein inactive fold evolution enzyme domain aravind by robfsouza on 2009-09-18 22:22:35 as
	Evolution and Classification of P-loop Kinases and Related Proteins☆ [My Copy] Journal of Molecular Biology, Vol. 333, No. 4. (31 Oct 2003), pp. 781-815. by Detlef D. Leipe, Eugene V. Koonin, L. Aravind posted to protein kinase inactive fold evolution enzyme aravind by robfsouza on 2009-09-18 22:17:14 as along with 1 person tny
	Detection of novel members, structure-function analysis and evolutionary classification of the 2H phosphoesterase superfamily [My Copy] Nucl. Acids Res., Vol. 30, No. 23. (1 Dec 2002), pp. 5229-5243. by Raja Mazumder, Lakshminarayan M. Iyer, Sona Vasudevan, L. Aravind posted to protein inactive fold evolution enzyme aravind by robfsouza on 2009-09-18 22:09:37 as along with 1 person and 1 group lilith 8_01
	Themis is a member of a new metazoan gene family and is required for the completion of thymocyte positive selection [My Copy] Nature Immunology, Vol. 10, No. 8. (13 Jul 2009), pp. 831-839. by Andy L. Johnson, L. Aravind, Natalia Shulzhenko, et al.Andre Morgun, See-Young Choi, Tanya L. Crockford, Teresa Lambe, Heather Domaschenz, Edyta M. Kucharska, Lixin Zheng, Carola G. Vinuesa, Michael J. Lenardo, Christopher C. Goodnow, Richard J. Cornall, Ronald H. Schwartz posted to protein inactive fold evolution enzyme domain aravind by robfsouza on 2009-09-18 22:05:45 as along with 1 person leliavski
	Small but versatile: the extraordinary functional and structural diversity of the beta-grasp fold [My Copy] Biology Direct, Vol. 2, No. 1. (02 Jul 2007), 18. by A. Maxwell Burroughs, S. Balaji, Lakshminarayan Iyer, L. Aravind posted to protein inactive fold evolution enzyme domain aravind by robfsouza on 2009-09-18 22:00:49 as
	The signaling helix: a common functional theme in diverse signaling proteins [My Copy] Biology Direct, Vol. 1, No. 1. (05 Sep 2006), 25. by Vivek Anantharaman, S. Balaji, L. Aravind posted to signaling protein inactive fold evolution enzyme aravind by robfsouza on 2009-09-18 21:58:51 as along with 1 person choonpeng

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protein	154
evolution	143
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rnase	1
robustness	1
rotifera	1
r-package	1
rrna	1
self-organization	1
single-stranded	1
sirna	1
site-directed	1
skates	1
small	1
somatic	1
speciation	1
splicing	1
stability	1
states	1
static	1
statistical	1
steroid	1
stoichiometry	1
strand	1
stress	1
suchard	1
suppressor	1
synechococcus	1
synteny	1
synthetic	1
technology	1
telomere	1
temperature	1
terminal	1
theorem	1
topology	1
transglutaminase	1
transposases	1
tree	1
tutorial	1
uncertainty	1
vertebrates	1
vesicular	1
videos	1
yeast	1
zinc-finger	1

robfsouza's evolution [143 articles] Export

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