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	The many faces of the helix-turn-helix domain: Transcription regulation and beyond⋆ [My Copy] FEMS Microbiology Reviews, Vol. 29, No. 2. (2005), pp. 231-262. by L. Aravind, Vivek Anantharaman, Santhanam Balaji, Mohan M. Babu, Lakshminarayan M. Iyer posted to transcription protein inactive fold evolution enzyme domain aravind by robfsouza on 2009-09-18 22:22:35 as
	Review: Chromatin Structural Features and Targets That Regulate Transcription [My Copy] Journal of Structural Biology, Vol. 129, No. 2-3. (April 2000), pp. 102-122. by A. Wolffe posted to transcription regulation chromosome chromatin by robfsouza on 2009-09-15 17:33:59 as
	Genome-wide analysis of interactions between ATP-dependent chromatin remodeling and histone modifications [My Copy] BMC Genomics, Vol. 10, No. 1. (08 July 2009), 304. by Zhiming Dai, Xianhua Dai, Qian Xiang, et al.Jihua Feng, Jiang Wang, Yangyang Deng, Caisheng He posted to transcription regulation modification histone genome chromosome chromatin atpase by robfsouza on 2009-09-15 17:32:47 as
	The complex language of chromatin regulation during transcription [My Copy] Nature, Vol. 447, No. 7143. (23 May 2007), pp. 407-412. by Shelley L. Berger posted to transcription regulation modification histone development chromatin by robfsouza on 2009-09-15 16:47:59 as along with 2 people and 1 group suizifish guhjy Bioinformatics
	Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization [My Copy] Nat Genet, Vol. 41, No. 4. (01 March 2009), pp. 438-445. by Yair Field, Yvonne Fondufe-Mittendorf, Irene K. Moore, et al.Piotr Mieczkowski, Noam Kaplan, Yaniv Lubling, Jason D. Lieb, Jonathan Widom, Eran Segal posted to transcription regulation gene expression evolution divergence chromosome chromatin by robfsouza on 2009-08-13 02:53:30 as along with 10 people and 1 group aprickett daveGerrard TRHvidsten siebert athma clearbluespring lp2 fenghezi djkt provero BergmanLab
	Genome-wide transcription map of an archaeal cell cycle [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 8. (20 February 2007), pp. 2939-2944. by Magnus Lundgren, Rolf Bernander posted to transcription scale replication regulation prokaryotes mitosis microarrays large dataset chromosome archaea by robfsouza on 2009-08-12 21:33:24 as
	Hub genes with positive feedbacks function as master switches in developmental gene regulatory networks [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1898-1904. by Chang H. Seo, Jeong-Rae Kim, Man-Sun Kim, Kwang-Hyun Cho posted to transcription network interaction hub gene feedback development complexity by robfsouza on 2009-08-11 17:03:45 as along with 3 people GustavoLacerda shikin jjray
	The many faces of the helix-turn-helix domain: transcription regulation and beyond. [My Copy] FEMS microbiology reviews, Vol. 29, No. 2. (April 2005), pp. 231-262. by L. Aravind, Vivek Anantharaman, Santhanam Balaji, Mohan M. Babu, Lakshminarayan M. Iyer posted to aravind domain evolution protein transcription by robfsouza on 2009-08-05 22:09:02 as along with 1 person cjeans
	Control of alternative splicing through siRNA-mediated transcriptional gene silencing [My Copy] Nat Struct Mol Biol, Vol. 16, No. 7. (July 2009), pp. 717-724. by Mariano Allo, Valeria Buggiano, Juan P. Fededa, et al.Ezequiel Petrillo, Ignacio Schor, Manuel de La Mata, Eneritz Agirre, Mireya Plass, Eduardo Eyras, Sherif A. Elela, Roscoe Klinck, Benoit Chabot, Alberto R. Kornblihtt posted to alternative gene regulation silencing sirna splicing transcription by robfsouza on 2009-08-05 17:21:49 as along with 1 person gdb
	Differential Regulation of Horizontally Acquired and Core Genome Genes by the Bacterial Modulator H-NS [My Copy] PLoS Genet, Vol. 5, No. 6. (12 June 2009), e1000513. by Rosa C. Baños, Aitziber Vivero, Sonia Aznar, et al.Jesús García, Miquel Pons, Cristina Madrid, Antonio Juárez posted to elements gene horizontal mobile regulation transcription transfer by robfsouza on 2009-08-05 16:59:56 as
	Origin and evolution of the archaeo-eukaryotic primase superfamily and related palm-domain proteins: structural insights and new members [My Copy] Nucl. Acids Res., Vol. 33, No. 12. (15 July 2005), pp. 3875-3896. by Lakshminarayan M. Iyer, Eugene V. Koonin, Detlef D. Leipe, L. Aravind posted to virus transcription superfamily primase inactive evolution eukaryote enzyme dna binding archaea aravind by robfsouza on 2009-07-18 02:41:07 as
	Transposable elements and the evolution of regulatory networks [My Copy] Nat Rev Genet, Vol. 9, No. 5. (27 May 2008), pp. 397-405. by Cedric Feschotte posted to eukaryote biological elements evolution genome mobile network regulation transcription transposon by robfsouza on 2009-07-01 21:35:52 as along with 12 people and 1 group fhalbrit balicea gwallau djkt bootsy idonaldson cmzmasek smbe2008 eskay roys pradiptaray timflutre BergmanLab
	Intergenic and Genic Sequence Lengths Have Opposite Relationships with Respect to Gene Expression [My Copy] PLoS ONE, Vol. 3, No. 11. (7 November 2008), e3670. by Juliette Colinas, Scott C. Schmidler, Gil Bohrer, Borislav Iordanov, Philip N. Benfey posted to exon expression length level protein sequence transcription by robfsouza on 2009-06-18 17:00:16 as along with 3 people and 2 groups druvus cisevol bpcusack cis-regulatory-evolution BergmanLab
	Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 8. (13 April 1999), pp. 4482-4487. by Laurent Duret, Dominique Mouchiroud posted to bias codon gene length level protein sequence transcription by robfsouza on 2009-06-18 16:48:55 as along with 4 people and 1 group saunders thegoose2 tharris bjorns C. elegans / WormBase
	Mistranslation-Induced Protein Misfolding as a Dominant Constraint on Coding-Sequence Evolution [My Copy] Cell, Vol. 134, No. 2. (25 July 2008), pp. 341-352. by Allan D. Drummond, Claus O. Wilke posted to accuracy bias codon evolution evolutionary expression gene level mutation protein rate selection substitution transcription translation by robfsouza on 2009-06-17 18:02:44 as along with 6 people nilsbecker scherrer jjray cambray bpcusack zwang
	Intron length and accelerated 3' gene evolution [My Copy] Genomics, Vol. 88, No. 6. (December 2006), pp. 682-689. by Clara S. Tang, Yong Z. Zhao, David K. Smith, Richard J. Epstein posted to gene length mutation transcription by robfsouza on 2009-06-16 23:26:02 as along with 2 people inesdesantiago aprasad
	Impacts of gene essentiality, expression pattern, and gene compactness on the evolutionary rate of mammalian proteins. [My Copy] Molecular biology and evolution, Vol. 23, No. 11. (November 2006), pp. 2072-2080. by Ben-Yang Y. Liao, Nicole M. Scott, Jianzhi Zhang posted to essentiality evolutionary gene length mammals rate specificity tissue transcription by robfsouza on 2009-06-16 23:17:48 as along with 1 person daveGerrard
	Extensive domain shuffling in transcription regulators of DNA viruses and implications for the origin of fungal APSES transcription factors [My Copy] Genome Biology, Vol. 3, No. 3. (2002) by Lakshminarayan Iyer, Eugene Koonin, L. Aravind posted to virus transcription shuffling factor evolution domain chromatin aravind by robfsouza on 2009-06-03 20:20:18 as
	Conservation of core gene expression in vertebrate tissues [My Copy] Journal of Biology, Vol. 8, No. 3. (16 April 2009), 33. by Esther Chan, Gerald Quon, Gordon Chua, et al.Tomas Babak, Miles Trochesset, Ralph Zirngibl, Jane Aubin, Michael Ratcliffe, Andrew Wilde, Michael Brudno, Quaid Morris, Timothy Hughes posted to network biological evolution regulation transcription by robfsouza on 2009-05-18 20:27:10 as along with 4 people grahamc maximilianh gdb dswan
	The regulated retrotransposon transcriptome of mammalian cells [My Copy] Nature Genetics, Vol. 41, No. 5. (19 April 2009), pp. 563-571. by Geoffrey J. Faulkner, Yasumasa Kimura, Carsten O. Daub, et al.Shivangi Wani, Charles Plessy, Katharine M. Irvine, Kate Schroder, Nicole Cloonan, Anita L. Steptoe, Timo Lassmann, Kazunori Waki, Nadine Hornig, Takahiro Arakawa, Hazuki Takahashi, Jun Kawai, Alistair R. R. Forrest, Harukazu Suzuki, Yoshihide Hayashizaki, David A. Hume, Valerio Orlando, Sean M. Grimmond, Piero Carninci posted to dna elements genome mobile regulation retrotransposon transcription transposon by robfsouza on 2009-05-18 19:53:04 as along with 13 people and 2 groups inesdesantiago guhjy gdb galka8_diploma tonamswish renatomilani cisevol dchughes mtagaya fenghezi jbhiatt natstreet antonkratz cis-regulatory-evolution BergmanLab
	Comparative genomics of transcription factors and chromatin proteins in parasitic protists and other eukaryotes. [My Copy] International journal for parasitology, Vol. 38, No. 1. (January 2008), pp. 1-31. by L. M. Iyer, V. Anantharaman, M. Y. Wolf, L. Aravind posted to histone acetylation aravind architecture chromatin complexity deacetylation demethylation domain evolution factor low methylation regulation sequence transcription virus by robfsouza on 2009-05-15 01:31:16 as along with 2 people gderwin kjglennie
	Reconstructing prokaryotic transcriptional regulatory networks: lessons from actinobacteria [My Copy] Journal of Biology, Vol. 8, No. 3. (15 April 2009), 29. by Thiago Venancio, L. Aravind posted to network transcription regulation genome biological aravind by robfsouza on 2009-04-27 19:36:08 as along with 1 person venancio

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protein	133
evolution	116
aravind	64
enzyme	53
inactive	51
structure	39
fold	38
sequence	37
indel	35
gene	33
length	33
network	32
complexity	28
interaction	28
chromatin	27
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low	24
biological	23
superfamily	23
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repeats	21
genome	20
regulation	18
virus	18
classification	16
binding	14
database	13
alignment	12
chromosome	12
homopeptide	11
prokaryotes	11
recombination	11
atpase	10
bioinformatics	10
codon	10
eukaryote	10
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complex	9
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bias	8
elements	8
mutation	8
replication	8
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cell	7
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annotation	6
assembly	6
comparative	6
composition	6
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division	6
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mobile	6
ntpase	6
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histone	5
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factor	4
large	4
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review	4
scale	4
segregation	4
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neurobiology	2
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ribosome	2
shuffling	2
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transport	1
tree	1
tutorial	1
ubiquitination	1
vertebrates	1
videos	1
yeast	1
zinc-finger	1

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