roys's library 543 articles Export

	Inferring transcriptional modules from ChIP-chip, motif and microarray data. [My Copy] Genome biology, Vol. 7, No. 5. (2006) by Karen Lemmens, Thomas Dhollander, Tijl De Bie, et al.Pieter Monsieurs, Kristof Engelen, Bart Smets, Joris Winderickx, Bart De Moor, Kathleen Marchal posted to tfbs modules module_nw by roys on 2009-11-17 06:58:37 as along with 4 people bozdagd alokm jfr kristallreiner
	Identifying combinatorial regulation of transcription factors and binding motifs. [My Copy] Genome biology, Vol. 5, No. 8. (2004) by Mamoru Kato, Naoya Hata, Nilanjana Banerjee, Bruce Futcher, Michael Q. Zhang posted to tfbs motif_identification combinatorial_control by roys on 2009-11-17 06:53:27 as along with 4 people fenghezi troels_marstrand wnpx jacky957
	A genetic signature of interspecies variations in gene expression. [My Copy] Nature genetics, Vol. 38, No. 7. (18 July 2006), pp. 830-834. by Itay Tirosh, Adina Weinberger, Miri Carmi, Naama Barkai posted to expression_divergence comparative_genomics by roys on 2009-11-17 05:52:07 as along with 8 people and 4 groups daveGerrard cabbagezs cisevol adepace nickluscombe aswin cjeans caseybrown BergmanLab cis-regulatory-evolution EisenLab EBI-regulation
	Frequent gain and loss of functional transcription factor binding sites. [My Copy] PLoS computational biology, Vol. 3, No. 5. (1 May 2007), e99. by Scott W. Doniger, Justin C. Fay posted to tfbs evolution comparative_genomics by roys on 2009-11-17 05:45:30 as along with 12 people and 2 groups fenghezi lusk JustinCrocker pradiptaray brant dpollard sebastien_vigneau zwang maximilianh cisevol xili03 emptyhb EisenLab cis-regulatory-evolution
	A tensor higher-order singular value decomposition for integrative analysis of DNA microarray data from different studies [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 47. (20 November 2007), pp. 18371-18376. by Larsson Omberg, Gene H. Golub, Orly Alter posted to data_pooling data_integration by roys on 2009-11-15 15:54:58 as along with 4 people and 1 group frohike tmmurali mikaelhuss wsjames Oxford Virology
	Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (09 November 2007), 437. by Xueping Yu, Jimmy Lin, Donald Zack, Jiang Qian posted to tissue_specificity tfbs motif_discovery combinatorial_control by roys on 2009-11-14 23:27:18 as along with 10 people isimpson guhjy chad_davis mikaelhuss nklee maximilianh idonaldson njcitulike bootsy snow_dragon
	Probabilistic clustering of sequences: Inferring new bacterial regulons by comparative genomics [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 11. (28 May 2002), pp. 7323-7328. by Erik van Nimwegen, Mihaela Zavolan, Nikolaus Rajewsky, Eric D. Siggia posted to tfprograms tfbs motif_clustering by roys on 2009-11-12 23:35:53 as along with 1 person Dulce
	Making connections between novel transcription factors and their DNA motifs. [My Copy] Genome research, Vol. 15, No. 2. (1 February 2005), pp. 312-320. by Kai Tan, Lee Ann A. McCue, Gary D. Stormo posted to protein_dna_interactions protein-dna_interaction_prediction by roys on 2009-11-12 23:25:13 as
	Allegro: Analyzing expression and sequence in concert to discover regulatory programs [My Copy] Nucl. Acids Res., Vol. 37, No. 5. (1 April 2009), pp. 1566-1579. by Yonit Halperin, Chaim Linhart, Igor Ulitsky, Ron Shamir posted to tfprograms tfnets motif_discovery modules by roys on 2009-11-12 23:15:41 as along with 3 people akshayk rdiaz nuin
	Transcription factor and microRNA motif discovery: The Amadeus platform and a compendium of metazoan target sets [My Copy] Genome Research, Vol. 18, No. 7. (14 July 2008), pp. 1180-1189. by Chaim Linhart, Yonit Halperin, Ron Shamir posted to motif_discovery by roys on 2009-11-12 23:13:31 as along with 13 people and 1 group dolchan akshayk wowalz natstreet valeriehilgers jfr ealloza idonaldson maralena fpattyn isimpson tmmurali maximilianh BergmanLab
	Accurate gene-tree reconstruction by learning gene- and species-specific substitution rates across multiple complete genomes. [My Copy] Genome research, Vol. 17, No. 12. (7 December 2007), pp. 1932-1942. by Matthew D. Rasmussen, Manolis Kellis posted to phylogenetic_reconstruction phylogenetic_methods evolution comparative_genomics by roys on 2009-11-12 00:56:08 as along with 6 people and 1 group mmfonseca inquil druvus dpollard stajich caseybrown EisenLab
	A Novel Bayesian DNA Motif Comparison Method for Clustering and Retrieval [My Copy] PLoS Comput Biol, Vol. 4, No. 2. (29 February 2008), e1000010. by Naomi Habib, Tommy Kaplan, Hanah Margalit, Nir Friedman posted to tfprograms motifs motif_libraries by roys on 2009-11-11 20:51:49 as
	GeNESiS: gene network evolution simulation software [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 541. by Anton Kratz, Masaru Tomita, Arun Krishnan posted to regnet evolution by roys on 2009-11-11 05:16:13 as along with 5 people meanerelk TRHvidsten nuin druvus antonkratz
	A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. [My Copy] Cell, Vol. 138, No. 2. (23 July 2009), pp. 314-327. by Christian A. Grove, Federico De Masi, M. Inmaculada Barrasa, et al.Daniel E. Newburger, Mark J. Alkema, Martha L. Bulyk, Albertha J. Walhout posted to worm_regulatory_nw worm protein_dna_interactions by roys on 2009-11-10 15:25:57 as along with 2 people freddemasi emptyhb
	hPDI: a database of experimental human protein-DNA interactions [My Copy] Bioinformatics (9 November 2009), btp631. by Zhi Xie, Shaohui Hu, Seth Blackshaw, Heng Zhu, Jiang Qian posted to protein_dna_interactions human database by roys on 2009-11-10 14:53:45 as along with 2 people neils frohike
	Aligning multiple genomic sequences with the threaded blockset aligner. [My Copy] Genome research, Vol. 14, No. 4. (April 2004), pp. 708-715. by Mathieu Blanchette, W. James Kent, Cathy Riemer, et al.Laura Elnitski, Arian F. Smit, Krishna M. Roskin, Robert Baertsch, Kate Rosenbloom, Hiram Clawson, Eric D. Green, David Haussler, Webb Miller posted to evolution comparative_genomics alignments by roys on 2009-11-09 01:19:43 as along with 13 people and 1 group emptyhb nuin aprasad APRegier operon ujh indigoviolet csardas djkt yylin Neeperando maralena AlexanderPico EisenLab
	Combinatorial binding predicts spatio-temporal cis-regulatory activity [My Copy] Nature, Vol. 462, No. 7269. (05 November 2009), pp. 65-70. by Robert P. Zinzen, Charles Girardot, Julien Gagneur, Martina Braun, Eileen E. M. Furlong posted to tfnets fly combinatorial_control by roys on 2009-11-08 19:15:53 as along with 10 people emptyhb toszko inesdesantiago fenghezi balabu iskathy djkt megraw TRHvidsten pedrobeltrao
	Alignment and Prediction of cis-Regulatory Modules Based on a Probabilistic Model of Evolution [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (13 March 2009), e1000299. by Xin He, Xu Ling, Saurabh Sinha posted to transcription_factor_binding_sites tfprograms evolution by roys on 2009-11-06 04:42:28 as along with 9 people megraw lusk TRHvidsten kieran101 nuin djkt mhamada maximilianh druvus
	Edgetic perturbation models of human inherited disorders [My Copy] Molecular Systems Biology, Vol. 5 (03 November 2009) by Quan Zhong, Nicolas Simonis, Qian-Ru Li, et al.Benoit Charloteaux, Fabien Heuze, Niels Klitgord, Stanley Tam, Haiyuan Yu, Kavitha Venkatesan, Danny Mou, Venus Swearingen, Muhammed A. Yildirim, Han Yan, Amelie Dricot, David Szeto, Chenwei Lin, Tong Hao, Changyu Fan, Stuart Milstein, Denis Dupuy, Robert Brasseur, David E. Hill, Michael E. Cusick, Marc Vidal posted to perturbations networks edgetic by roys on 2009-11-04 00:52:03 as along with 5 people mingzhi phoenixzxl tmmurali pedrobeltrao brianb
	Bayesian Multitask Learning with Latent Hierarchies [My Copy] ArXiv e-prints (July 2009) by H. I. Daumé posted to multitask_learning by roys on 2009-10-22 06:42:18 as
	A Semi-Supervised Method for Predicting Transcription Factor–Gene Interactions in Escherichia coli [My Copy] PLoS Comput Biol, Vol. 4, No. 3. (28 March 2008), e1000044. by Jason Ernst, Qasim K. Beg, Krin A. Kay, Gábor Balázsi, Zoltán N. Oltvai, Ziv Bar-Joseph posted to regulatory_networks ecoli classification by roys on 2009-10-20 06:10:16 as along with 3 people nklee xili03 eskay
	Conservation and Evolution of Cis-Regulatory Systems in Ascomycete Fungi [My Copy] PLoS Biol, Vol. 2, No. 12. (9 November 2004), e398. by Audrey P. Gasch, Alan M. Moses, Derek Y. Chiang, Hunter B. Fraser, Mark Berardini, Michael B. Eisen posted to species_specific_nw regulatory_networks comparative_genomics by roys on 2009-10-20 05:38:59 as along with 6 people and 3 groups matted mbeisen tsackton nickluscombe lusk cisevol EisenLab EBI-regulation cis-regulatory-evolution
	Inferring gene regulatory networks from multiple microarray datasets [My Copy] Bioinformatics, Vol. 22, No. 19. (1 October 2006), pp. 2413-2420. by Yong Wang, Trupti Joshi, Xiang-Sun Zhang, Dong Xu, Luonan Chen posted to species_specific_nw comparative_genomics by roys on 2009-10-20 04:33:50 as along with 5 people antonkratz frohike jhatrimatri natstreet heliopais
	Comparative genomics. [My Copy] PLoS biology, Vol. 1, No. 2. (17 November 2003), e58. by Ross C. Hardison posted to review comparative_genomics by roys on 2009-10-20 03:09:02 as along with 7 people and 1 group rshe katholt aprasad axelon beatrizfernandez nklee Neeperando Microbial-Ecology
	Cross-species analysis of biological networks by Bayesian alignment. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 29. (18 July 2006), pp. 10967-10972. by Johannes Berg, Michael Lässig posted to species_specific_nw by roys on 2009-10-19 03:14:26 as along with 5 people and 1 group pengchy jeremymiller guhjy adepace bpcusack EisenLab
	Cross-species microarray analysis with the OSCAR system suggests an INSR->Pax6->NQO1 neuro-protective pathway in aging and Alzheimer's disease [My Copy] Nucl. Acids Res., Vol. 35, No. suppl_2. (13 July 2007), pp. W105-114. by Yue Lu, Xin He, Sheng Zhong posted to species_specific_nw species_data comparative_genomics by roys on 2009-10-18 20:21:02 as along with 3 people daforerog guhjy ghattem
	Cross species analysis of microarray expression data [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. 1476-1483. by Yong Lu, Peter Huggins, Ziv Bar-Joseph posted to species_specific_nw comparative_genomics biological_networks by roys on 2009-10-16 22:39:39 as along with 12 people and 1 group jfr daveGerrard ptrobajo guhjy yaredo shikin dswan renatomilani rdiaz thomaskelder natstreet druvus Bioinformatics
	Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome [My Copy] Science, Vol. 326, No. 5950. (9 October 2009), pp. 289-293. by Erez Lieberman-Aiden, Nynke L. van Berkum, Louise Williams, et al.Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R. Lajoie, Peter J. Sabo, Michael O. Dorschner, Richard Sandstrom, Bradley Bernstein, M. A. Bender, Mark Groudine, Andreas Gnirke, John Stamatoyannopoulos, Leonid A. Mirny, Eric S. Lander, Job Dekker posted to sequence higher_order_dependencies genomes genome_complexity by roys on 2009-10-16 22:35:43 as along with 31 people and 3 groups pmcarlton alhufton psique qayub chvlyl TorstenWaldminghaus kintoki Garamonfok inesdesantiago NickFurnham DrRichardBadge rdiaz daveGerrard colinveal frohike nrk891 zwang timflutre afenley kshameer polivares mgatmedsci diamantis flbarroso jdoconnell fenghezi daforerog bpcusack gjuggler gdb gbloeb JLab BergmanLab Journal picks
	Simultaneous inference of biological networks of multiple species from genome-wide data and evolutionary information: a semi-supervised approach [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2962-2968. by Hisashi Kashima, Yoshihiro Yamanishi, Tsuyoshi Kato, Masashi Sugiyama, Koji Tsuda posted to species_specific_nw evolution by roys on 2009-10-16 06:46:51 as along with 3 people and 1 group jperkins phoenixzxl druvus Orengo Group Journal Picks
	Evolution of Eukaryotic Transcription Circuits [My Copy] Science, Vol. 319, No. 5871. (28 March 2008), pp. 1797-1799. by Brian B. Tuch, Hao Li, Alexander D. Johnson posted to tfnets rewiring evolution by roys on 2009-10-15 00:22:56 as along with 6 people biomcgary balabu emptyhb AbnerCYH djkt bpcusack
	Genome-Wide Analysis of the General Stress Response Network in Escherichia coli: sigmaS-Dependent Genes, Promoters, and Sigma Factor Selectivity [My Copy] J. Bacteriol., Vol. 187, No. 5. (1 March 2005), pp. 1591-1603. by Harald Weber, Tino Polen, Johanna Heuveling, Volker F. Wendisch, Regine Hengge posted to stress_responses networks bacteria by roys on 2009-10-11 03:34:54 as
	Statistical lower bounds on protein copy number from fluorescence expression images [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2670-2676. by Lee Zamparo, Theodore J. Perkins posted to protein_expression image_analysis by roys on 2009-10-09 16:22:17 as along with 1 person brianb
	How To Choose a Good Scientific Problem [My Copy] Molecular Cell, Vol. 35, No. 6. (24 September 2009), pp. 726-728. by Uri Alon posted to general by roys on 2009-10-09 05:54:39 as along with 123 people and 6 groups cefa gvdh penneyft welliegirl bertelsen thegoose xawen chriswillmott nellapower ishiken andreff claudiushauptmann cermak bmoores karthikraman applebyb mordiano Gorzomagnificent Horduna ajaymalik mmwoodman dbikard toszko mthomure timflutre cyounkin marsl0am jmzhuo dmorti renatomilani ibre kevinemamy Sergey_gerbek huberse ddbb12 seneca mattbiehl mmborges GeeSharpMinor jjjpppfff zhangfh andreacapocci melo_mcr aaltenburger iannis jichok josephjose TorstenWaldminghaus kshameer rudalert kvalyi duel_jetty allaves rabit fercosber hax123 iskanbasal livingthingdan poojamaj gonzalez amynmoore ramalldf pvdg sfalsharif dill2009 singhsh rogermug aha jarekadam Jansen04 cgravlee lkakinami anuragsethi flips robfree kaliczp yyfwuhan luciensamary elsantosneto mgaldino daveGerrard sandfire tnhh lesandrop munzmarci pdpcosta mxro wangngu myriasofo OliverHarriman AnthonySoprano robertlischke R_C_Cordeiro daforerog operon nandipati wenhaosparty jeffcrow leocmcheung fgibson snakehsu cisevol michaelbarton dna dullhunk danilov m_lew abellogin cxshang grahamc SantoshKalwar Xusheng leonardo benoitvalley zchen75 darshan druvus Asclepius Zephyrus songpku aalibes flieder pedromts Brain-like research group UWA Science Communication milab@yzu Information Integration Architecture BergmanLab Roswell Cancer Crosstalk
	Integrating Proteomic, Transcriptional, and Interactome Data Reveals Hidden Components of Signaling and Regulatory Networks [My Copy] Sci. Signal., Vol. 2, No. 81. (28 July 2009), ra40. by Shao-shan C. Huang, Ernest Fraenkel posted to signaling_nw protein_nw data_integration by roys on 2009-09-29 03:10:27 as along with 2 people brianb sjcockell
	A global analysis of cross-talk in a mammalian cellular signalling network [My Copy] Nat Cell Biol, Vol. 8, No. 6. (14 May 2006), pp. 571-580. by Madhusudan Natarajan, Keng-Mean Lin, Robert C. Hsueh, Paul C. Sternweis, Rama Ranganathan posted to signaling_nw mammals by roys on 2009-09-29 02:41:16 as along with 1 person dragonrez
	A metabolic network in the evolutionary context: Multiscale structure and modularity [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 23. (6 June 2006), pp. 8774-8779. by Victor Spirin, Mikhail S. Gelfand, Andrey A. Mironov, Leonid A. Mirny posted to metabolic_nw evolution by roys on 2009-09-27 03:27:07 as along with 6 people and 1 group sergiun renatomilani tny cmm koller fishtank FAB-lab
	Local DNA topography correlates with functional noncoding regions of the human genome. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5925. (17 April 2009), pp. 389-392. by Stephen C. Parker, Loren Hansen, Hatice Ozel O. Abaan, Thomas D. Tullius, Elliott H. Margulies posted to sequence evolution dna comparative_genomics by roys on 2009-09-25 07:08:38 as along with 38 people and 6 groups daveGerrard operon sujaikumar antonkratz pradiptaray gjuggler benjaminsb gdb hagechouchin443 tomtullius scjparker psique orzenil emptyhb ilyashl coela VGreiff APRegier myzhang pkonings akundaje athma absterga rpatward timflutre stajich bpcusack jbhiatt djkt dhlbh friendpine dpollard inesdesantiago JustinCrocker aprasad maximilianh idonaldson kshundyak BergmanLab Mycology structural_bioinformatics RockmanLab EisenLab cis-regulatory-evolution
	Evolution of Stress-Regulated Gene Expression in Duplicate Genes of Arabidopsis thaliana [My Copy] PLoS Genet, Vol. 5, No. 7. (31 July 2009), e1000581. by Cheng Zou, Melissa D. Lehti-Shiu, Michael Thomashow, Shin-Han Shiu posted to stress_responses evolution by roys on 2009-09-25 06:49:18 as along with 2 people sameersoi djkt
	Modularity of stress response evolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 21. (27 May 2008), pp. 7500-7505. by Amoolya H. Singh, Denise M. Wolf, Peggy Wang, Adam P. Arkin posted to stress_responses evolution by roys on 2009-09-25 05:22:38 as along with 4 people biomcgary erel10 deanmalmgren Retchless
	Evolution of a Novel Phenolic Pathway for Pollen Development [My Copy] Science, Vol. 325, No. 5948. (25 September 2009), pp. 1688-1692. by Michiyo Matsuno, Vincent Compagnon, Guillaume A. Schoch, et al.Martine Schmitt, Delphine Debayle, Jean-Etienne Bassard, Brigitte Pollet, Alain Hehn, Dimitri Heintz, Pascaline Ullmann, Catherine Lapierre, Francois Bernier, Jurgen Ehlting, Daniele Werck-Reichhart posted to metabolic_nw evolution by roys on 2009-09-25 03:39:14 as along with 1 person marcio
	Evolution of biological complexity [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 9. (25 April 2000), pp. 4463-4468. by Christoph Adami, Charles Ofria, Travis C. Collier posted to evolution_complexity by roys on 2009-09-24 02:48:36 as along with 5 people yyfwuhan tommorris anatiferous kray dylan77
	False positive reduction in protein-protein interaction predictions using gene ontology annotations [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (23 July 2007), 262. by Mahmoud Mahdavi, Yen H. Lin posted to protein_nw_quality by roys on 2009-09-23 23:20:52 as along with 5 people grahamc iris_2001 mingzhi cerca penpen926
	MicroRNAs tell an evo\|[ndash]\|devo story [My Copy] Nature Reviews Neuroscience, Vol. 10, No. 10. (09 September 2009), pp. 754-759. by Kenneth S. Kosik posted to neuroscience ncrna microrna evolutionary_developmental_biology by roys on 2009-09-23 00:54:36 as along with 4 people and 1 group aaltenburger heliopais valeriehilgers dchughes microRNA
	Comparative biology: beyond sequence analysis [My Copy] Current Opinion in Biotechnology, Vol. 18, No. 4. (9 August 2007), pp. 371-377. by I. Tirosh, Y. Bilu, N. Barkai posted to regulatory_nw comparative_genomics by roys on 2009-09-21 02:02:04 as along with 1 group Bioinformatics
	Eukaryotic regulatory RNAs: an answer to the âgenome complexityâ conundrum [My Copy] Genes & Development, Vol. 21, No. 1. (1 January 2007), pp. 11-42. by Kannanganattu V. Prasanth, David L. Spector posted to ncrna genome_complexity by roys on 2009-09-19 00:55:59 as along with 7 people and 2 groups GeeSharpMinor galka8_diploma dchughes Carnegie proudhon rarpa121 msasaki2 G4ID Genetics-of-Gambling
	Evolution of Evolvability in Gene Regulatory Networks [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000112. by Anton Crombach, Paulien Hogeweg posted to regulatory_nw evolution by roys on 2009-09-18 03:07:58 as along with 18 people and 1 group tomhebbron mjoach semrich wangbo kaarsinogen renatomilani aramesh2 erel10 Ema jdiezperezj bootsy dlobo Stew djkt dquest shoshin rebeccamancy Borelli GEB
	Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima [My Copy] Science, Vol. 325, No. 5947. (18 September 2009), pp. 1544-1549. by Ying Zhang, Ines Thiele, Dana Weekes, et al.Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley M. Deacon, John Wooley, Scott A. Lesley, Ian A. Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik posted to protein_domains protein_domain_sequences metabolic_nw by roys on 2009-09-18 02:33:56 as along with 13 people michaelbarton venancio schwartzjmc apocapoc eehsanipour riffraff reyez TRHvidsten flbarroso daveGerrard zwang pablocarb phoenixzxl
	Evolution and functions of long noncoding RNAs. [My Copy] Cell, Vol. 136, No. 4. (20 February 2009), pp. 629-641. by Chris P. Ponting, Peter L. Oliver, Wolf Reik posted to review ncrna by roys on 2009-09-17 06:20:27 as along with 6 people ongenetics taylor73 guhjy erikarner provero mbj
	InterProScan: protein domains identifier [My Copy] Nucl. Acids Res., Vol. 33, No. suppl_2. (1 July 2005), pp. W116-120. by E. Quevillon, V. Silventoinen, S. Pillai, et al.N. Harte, N. Mulder, R. Apweiler, R. Lopez posted to protein_nw protein_domains protein_domain_sequences by roys on 2009-09-16 22:04:28 as along with 4 people behindtherabbit Cortel dullhunk sgoetz
	Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive assessment. [My Copy] BMC bioinformatics, Vol. 8 (23 May 2007), 173. by Raja Jothi, Teresa M. Przytycka, L. Aravind posted to protein_nw protein_domain_sequences by roys on 2009-09-16 21:46:17 as along with 1 person and 1 group yas T_lab

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protein_nw	44
bayesian_networks	41
biological_networks	39
gene_expression	38
fly	32
network_inference	30
causality	28
neuroscience	27
networks	25
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markov_networks	14
human	13
statistical_relational_models	13
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review	12
signaling_nw	12
structure_learning	11
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timeseries	10
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combinatorial_control	8
differential_expression	8
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systems_biology	8
tfprograms	8
transcription_modules	8
mental_diseases	7
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mouse	7
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ca	6
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graph_theory	6
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module_nw	6
protein-dna_interaction_prediction	6
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ecoli	3
expression_correlation	3
factor_graphs	3
gaussian_processes	3
gene_regulation	3
genome_wide_assoc	3
graph_clustering	3
graphical_gaussian	3
graphs	3
hidden_vars	3
higher_order_dependencies	3
imp_aminoacids	3
mammals	3
metabolite_expression	3
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motif_discovery	3
mtl	3
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software	3
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evolution_complexity	1
experimental_conditions	1
expression_divergence	1
fold_prediction	1
forward_genetics	1
fungi	1
gene_duplication	1
gene_interactions	1
general	1
generalize_pseudo_likelihood	1
gene_ranking	1
gene_set_analysis	1
genomes	1
genomic_rearrangements	1
glycine	1
growth	1
gwa	1
haplotype	1
high_resolution_network	1
image_analysis	1
imaging	1
imago	1
intact	1
interventions	1
kitano02	1
laplacian	1
lasso	1
learning	1
logic_nw	1
low_complexity_regions	1
mag	1
mdags	1
microrna	1
mixture_of_experts	1
model_counting	1
modencode	1
moma	1
motif_clustering	1
motif_identification	1
motif_libraries	1
motifs	1
mrfs	1
ms	1
mt	1
multi_information	1
multinets	1
multiple_patient_data	1
multitask_learning	1
nested_effect_models	1
network_representation	1
nextgen_sequencing	1
nmf	1
nucleosome	1
nutrient_limitation	1
nw_alignment	1
nw_schema	1
omni	1
osmotic_stress	1
overlap_clustering	1
partition_function	1
pdags	1
perturbations	1
petrinet	1
phenotype_correlation	1
phenotypic_correlation	1
phylogenetic_methods	1
phylogenetic_reconstruction	1
probability_distribution_spectral_method	1
proline	1
protein_degradation	1
protein_interactions	1
protein_quantification	1
proteomics_data	1
rna_mrna_nw	1
rnaseqrev	1
robustness	1
room	1
sam	1
schizophrenia	1
sem	1
semantic_similarity	1
sequencing	1
simulation	1
single_cell	1
single_molecule	1
sparse_candidate	1
species_data	1
spline	1
statistical_learning	1
structured_classification	1
sum_product	1
svm	1
synthetic_biology	1
tissue_specificity	1
tokha07	1
tor	1
tra	1
transcription_factor_binding_sites	1
transfer_learning	1
tree_distributions	1
unsuperviselearning	1
workshop	1

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