roys's library 526 articles Export

	Alignment and Prediction of cis-Regulatory Modules Based on a Probabilistic Model of Evolution [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (13 March 2009), e1000299. by Xin He, Xu Ling, Saurabh Sinha posted to transcription_factor_binding_sites tfprograms evolution by roys on 2009-11-06 04:42:28 as along with 9 people megraw lusk TRHvidsten kieran101 nuin djkt mhamada maximilianh druvus
	Edgetic perturbation models of human inherited disorders [My Copy] Molecular Systems Biology, Vol. 5 (03 November 2009) by Quan Zhong, Nicolas Simonis, Qian-Ru Li, et al.Benoit Charloteaux, Fabien Heuze, Niels Klitgord, Stanley Tam, Haiyuan Yu, Kavitha Venkatesan, Danny Mou, Venus Swearingen, Muhammed A. Yildirim, Han Yan, Amelie Dricot, David Szeto, Chenwei Lin, Tong Hao, Changyu Fan, Stuart Milstein, Denis Dupuy, Robert Brasseur, David E. Hill, Michael E. Cusick, Marc Vidal posted to perturbations networks edgetic by roys on 2009-11-04 00:52:03 as along with 3 people tmmurali pedrobeltrao brianb
	Bayesian Multitask Learning with Latent Hierarchies [My Copy] ArXiv e-prints (July 2009) by H. I. Daumé posted to multitask_learning by roys on 2009-10-22 06:42:18 as
	A Semi-Supervised Method for Predicting Transcription Factor–Gene Interactions in Escherichia coli [My Copy] PLoS Comput Biol, Vol. 4, No. 3. (28 March 2008), e1000044. by Jason Ernst, Qasim K. Beg, Krin A. Kay, Gábor Balázsi, Zoltán N. Oltvai, Ziv Bar-Joseph posted to regulatory_networks ecoli classification by roys on 2009-10-20 06:10:16 as along with 3 people nklee xili03 eskay
	Conservation and Evolution of Cis-Regulatory Systems in Ascomycete Fungi [My Copy] PLoS Biol, Vol. 2, No. 12. (9 November 2004), e398. by Audrey P. Gasch, Alan M. Moses, Derek Y. Chiang, Hunter B. Fraser, Mark Berardini, Michael B. Eisen posted to species_specific_nw regulatory_networks comparative_genomics by roys on 2009-10-20 05:38:59 as along with 6 people and 3 groups matted mbeisen tsackton nickluscombe lusk cisevol EisenLab EBI-regulation cis-regulatory-evolution
	Inferring gene regulatory networks from multiple microarray datasets [My Copy] Bioinformatics, Vol. 22, No. 19. (1 October 2006), pp. 2413-2420. by Yong Wang, Trupti Joshi, Xiang-Sun Zhang, Dong Xu, Luonan Chen posted to species_specific_nw comparative_genomics by roys on 2009-10-20 04:33:50 as along with 5 people antonkratz frohike jhatrimatri natstreet heliopais
	Comparative Genomics [My Copy] PLoS Biol, Vol. 1, No. 2. (17 November 2003), e58. by Ross C. Hardison posted to review comparative_genomics by roys on 2009-10-20 03:09:02 as along with 6 people and 1 group katholt aprasad axelon beatrizfernandez nklee Neeperando Microbial-Ecology
	Cross-species analysis of biological networks by Bayesian alignment. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 29. (18 July 2006), pp. 10967-10972. by Johannes Berg, Michael Lässig posted to species_specific_nw by roys on 2009-10-19 03:14:26 as along with 5 people and 1 group pengchy jeremymiller guhjy adepace bpcusack EisenLab
	Cross-species microarray analysis with the OSCAR system suggests an INSR->Pax6->NQO1 neuro-protective pathway in aging and Alzheimer's disease [My Copy] Nucl. Acids Res., Vol. 35, No. suppl_2. (13 July 2007), pp. W105-114. by Yue Lu, Xin He, Sheng Zhong posted to species_specific_nw species_data comparative_genomics by roys on 2009-10-18 20:21:02 as along with 3 people daforerog guhjy ghattem
	Cross species analysis of microarray expression data [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. 1476-1483. by Yong Lu, Peter Huggins, Ziv Bar-Joseph posted to species_specific_nw comparative_genomics biological_networks by roys on 2009-10-16 22:39:39 as along with 11 people and 1 group daveGerrard ptrobajo guhjy yaredo shikin dswan renatomilani rdiaz thomaskelder natstreet druvus Bioinformatics
	Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome [My Copy] Science, Vol. 326, No. 5950. (9 October 2009), pp. 289-293. by Erez Lieberman-Aiden, Nynke L. van Berkum, Louise Williams, et al.Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R. Lajoie, Peter J. Sabo, Michael O. Dorschner, Richard Sandstrom, Bradley Bernstein, M. A. Bender, Mark Groudine, Andreas Gnirke, John Stamatoyannopoulos, Leonid A. Mirny, Eric S. Lander, Job Dekker posted to sequence higher_order_dependencies genomes genome_complexity by roys on 2009-10-16 22:35:43 as along with 29 people and 3 groups psique qayub chvlyl TorstenWaldminghaus kintoki Garamonfok inesdesantiago NickFurnham DrRichardBadge rdiaz daveGerrard colinveal frohike nrk891 zwang timflutre afenley kshameer polivares mgatmedsci diamantis flbarroso jdoconnell fenghezi daforerog bpcusack gjuggler gdb gbloeb JLab BergmanLab Journal picks
	Simultaneous inference of biological networks of multiple species from genome-wide data and evolutionary information: a semi-supervised approach [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2962-2968. by Hisashi Kashima, Yoshihiro Yamanishi, Tsuyoshi Kato, Masashi Sugiyama, Koji Tsuda posted to species_specific_nw evolution by roys on 2009-10-16 06:46:51 as along with 2 people phoenixzxl druvus
	Evolution of Eukaryotic Transcription Circuits [My Copy] Science, Vol. 319, No. 5871. (28 March 2008), pp. 1797-1799. by Brian B. Tuch, Hao Li, Alexander D. Johnson posted to tfnets rewiring evolution by roys on 2009-10-15 00:22:56 as along with 6 people biomcgary balabu emptyhb AbnerCYH djkt bpcusack
	Genome-Wide Analysis of the General Stress Response Network in Escherichia coli: sigmaS-Dependent Genes, Promoters, and Sigma Factor Selectivity [My Copy] J. Bacteriol., Vol. 187, No. 5. (1 March 2005), pp. 1591-1603. by Harald Weber, Tino Polen, Johanna Heuveling, Volker F. Wendisch, Regine Hengge posted to stress_responses networks bacteria by roys on 2009-10-11 03:34:54 as
	Statistical lower bounds on protein copy number from fluorescence expression images [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2670-2676. by Lee Zamparo, Theodore J. Perkins posted to protein_expression image_analysis by roys on 2009-10-09 16:22:17 as along with 1 person brianb
	How To Choose a Good Scientific Problem [My Copy] Molecular Cell, Vol. 35, No. 6. (24 September 2009), pp. 726-728. by Uri Alon posted to general by roys on 2009-10-09 05:54:39 as along with 100 people and 5 groups mthomure timflutre cyounkin marsl0am jmzhuo dmorti renatomilani ibre kevinemamy Sergey_gerbek huberse ddbb12 seneca mattbiehl mmborges GeeSharpMinor jjjpppfff zhangfh andreacapocci melo_mcr aaltenburger iannis jichok josephjose TorstenWaldminghaus kshameer rudalert kvalyi duel_jetty allaves rabit fercosber hax123 iskanbasal livingthingdan poojamaj gonzalez amynmoore ramalldf pvdg sfalsharif dill2009 singhsh rogermug aha jarekadam Jansen04 cgravlee lkakinami anuragsethi flips robfree kaliczp yyfwuhan luciensamary elsantosneto mgaldino daveGerrard sandfire tnhh lesandrop munzmarci pdpcosta mxro wangngu myriasofo OliverHarriman AnthonySoprano robertlischke R_C_Cordeiro daforerog operon nandipati wenhaosparty jeffcrow leocmcheung fgibson snakehsu cisevol michaelbarton dna dullhunk danilov m_lew abellogin cxshang grahamc SantoshKalwar Xusheng leonardo benoitvalley zchen75 darshan druvus Asclepius Zephyrus songpku aalibes flieder pedromts UWA Science Communication milab@yzu Information Integration Architecture BergmanLab Roswell Cancer Crosstalk
	Integrating Proteomic, Transcriptional, and Interactome Data Reveals Hidden Components of Signaling and Regulatory Networks [My Copy] Sci. Signal., Vol. 2, No. 81. (28 July 2009), ra40. by Shao-shan C. Huang, Ernest Fraenkel posted to signaling_nw protein_nw data_integration by roys on 2009-09-29 03:10:27 as along with 2 people brianb sjcockell
	A global analysis of cross-talk in a mammalian cellular signalling network [My Copy] Nat Cell Biol, Vol. 8, No. 6. (14 May 2006), pp. 571-580. by Madhusudan Natarajan, Keng-Mean Lin, Robert C. Hsueh, Paul C. Sternweis, Rama Ranganathan posted to signaling_nw mammals by roys on 2009-09-29 02:41:16 as along with 1 person dragonrez
	A metabolic network in the evolutionary context: Multiscale structure and modularity [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 23. (6 June 2006), pp. 8774-8779. by Victor Spirin, Mikhail S. Gelfand, Andrey A. Mironov, Leonid A. Mirny posted to metabolic_nw evolution by roys on 2009-09-27 03:27:07 as along with 6 people and 1 group sergiun renatomilani tny cmm koller fishtank FAB-lab
	Local DNA Topography Correlates with Functional Noncoding Regions of the Human Genome [My Copy] Science, Vol. 324, No. 5925. (17 April 2009), pp. 389-392. by Stephen C. J. Parker, Loren Hansen, Hatice O. Abaan, Thomas D. Tullius, Elliott H. Margulies posted to sequence evolution dna comparative_genomics by roys on 2009-09-25 07:08:38 as along with 38 people and 6 groups daveGerrard operon sujaikumar antonkratz pradiptaray gjuggler benjaminsb gdb hagechouchin443 tomtullius scjparker psique orzenil emptyhb ilyashl coela VGreiff APRegier myzhang pkonings akundaje athma absterga rpatward timflutre stajich bpcusack jbhiatt djkt dhlbh friendpine dpollard inesdesantiago JustinCrocker aprasad maximilianh idonaldson kshundyak BergmanLab Mycology structural_bioinformatics RockmanLab EisenLab cis-regulatory-evolution
	Evolution of Stress-Regulated Gene Expression in Duplicate Genes of Arabidopsis thaliana [My Copy] PLoS Genet, Vol. 5, No. 7. (31 July 2009), e1000581. by Cheng Zou, Melissa D. Lehti-Shiu, Michael Thomashow, Shin-Han Shiu posted to stress_responses evolution by roys on 2009-09-25 06:49:18 as along with 2 people sameersoi djkt
	Modularity of stress response evolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 21. (27 May 2008), pp. 7500-7505. by Amoolya H. Singh, Denise M. Wolf, Peggy Wang, Adam P. Arkin posted to stress_responses evolution by roys on 2009-09-25 05:22:38 as along with 4 people biomcgary erel10 deanmalmgren Retchless
	Evolution of a Novel Phenolic Pathway for Pollen Development [My Copy] Science, Vol. 325, No. 5948. (25 September 2009), pp. 1688-1692. by Michiyo Matsuno, Vincent Compagnon, Guillaume A. Schoch, et al.Martine Schmitt, Delphine Debayle, Jean-Etienne Bassard, Brigitte Pollet, Alain Hehn, Dimitri Heintz, Pascaline Ullmann, Catherine Lapierre, Francois Bernier, Jurgen Ehlting, Daniele Werck-Reichhart posted to metabolic_nw evolution by roys on 2009-09-25 03:39:14 as along with 1 person marcio
	Evolution of biological complexity [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 9. (25 April 2000), pp. 4463-4468. by Christoph Adami, Charles Ofria, Travis C. Collier posted to evolution_complexity by roys on 2009-09-24 02:48:36 as along with 5 people yyfwuhan tommorris anatiferous kray dylan77
	False positive reduction in protein-protein interaction predictions using gene ontology annotations [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (23 July 2007), 262. by Mahmoud Mahdavi, Yen H. Lin posted to protein_nw_quality by roys on 2009-09-23 23:20:52 as along with 5 people grahamc iris_2001 mingzhi cerca penpen926
	MicroRNAs tell an evo\|[ndash]\|devo story [My Copy] Nature Reviews Neuroscience, Vol. 10, No. 10. (09 September 2009), pp. 754-759. by Kenneth S. Kosik posted to neuroscience ncrna microrna evolutionary_developmental_biology by roys on 2009-09-23 00:54:36 as along with 3 people and 1 group heliopais valeriehilgers dchughes microRNA
	Comparative biology: beyond sequence analysis [My Copy] Current Opinion in Biotechnology, Vol. 18, No. 4. (9 August 2007), pp. 371-377. by I. Tirosh, Y. Bilu, N. Barkai posted to regulatory_nw comparative_genomics by roys on 2009-09-21 02:02:04 as along with 1 group Bioinformatics
	Eukaryotic regulatory RNAs: an answer to the âgenome complexityâ conundrum [My Copy] Genes & Development, Vol. 21, No. 1. (1 January 2007), pp. 11-42. by Kannanganattu V. Prasanth, David L. Spector posted to ncrna genome_complexity by roys on 2009-09-19 00:55:59 as along with 7 people and 2 groups GeeSharpMinor galka8_diploma dchughes Carnegie proudhon rarpa121 msasaki2 G4ID Genetics-of-Gambling
	Evolution of Evolvability in Gene Regulatory Networks [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000112. by Anton Crombach, Paulien Hogeweg posted to regulatory_nw evolution by roys on 2009-09-18 03:07:58 as along with 18 people and 1 group tomhebbron mjoach semrich wangbo kaarsinogen renatomilani aramesh2 erel10 Ema jdiezperezj bootsy dlobo Stew djkt dquest shoshin rebeccamancy Borelli GEB
	Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima [My Copy] Science, Vol. 325, No. 5947. (18 September 2009), pp. 1544-1549. by Ying Zhang, Ines Thiele, Dana Weekes, et al.Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley M. Deacon, John Wooley, Scott A. Lesley, Ian A. Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik posted to protein_domains protein_domain_sequences metabolic_nw by roys on 2009-09-18 02:33:56 as along with 12 people venancio schwartzjmc apocapoc eehsanipour riffraff reyez TRHvidsten flbarroso daveGerrard zwang pablocarb phoenixzxl
	Evolution and Functions of Long Noncoding RNAs [My Copy] Cell, Vol. 136, No. 4. (20 February 2009), pp. 629-641. by Chris P. Ponting, Peter L. Oliver, Wolf Reik posted to review ncrna by roys on 2009-09-17 06:20:27 as along with 5 people taylor73 guhjy erikarner provero mbj
	InterProScan: protein domains identifier [My Copy] Nucl. Acids Res., Vol. 33, No. suppl_2. (1 July 2005), pp. W116-120. by E. Quevillon, V. Silventoinen, S. Pillai, et al.N. Harte, N. Mulder, R. Apweiler, R. Lopez posted to protein_nw protein_domains protein_domain_sequences by roys on 2009-09-16 22:04:28 as along with 4 people behindtherabbit Cortel dullhunk sgoetz
	Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive assessment. [My Copy] BMC bioinformatics, Vol. 8 (23 May 2007), 173. by Raja Jothi, Teresa M. Przytycka, L. Aravind posted to protein_nw protein_domain_sequences by roys on 2009-09-16 21:46:17 as along with 1 person and 1 group yas T_lab
	Predicting protein domain interactions from coevolution of conserved regions. [My Copy] Proteins, Vol. 67, No. 4. (1 June 2007), pp. 811-820. by Maricel G. Kann, Raja Jothi, Praveen F. Cherukuri, Teresa M. Przytycka posted to protein_nw_quality protein_interactions protein_domain_sequences by roys on 2009-09-16 21:43:28 as along with 2 people chica cjeans
	Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network [My Copy] Nat Meth, Vol. 6, No. 1. (14 December 2008), pp. 47-54. by Nicolas Simonis, Jean-Francois Rual, Anne-Ruxandra Carvunis, et al.Murat Tasan, Irma Lemmens, Tomoko Hirozane-Kishikawa, Tong Hao, Julie M. Sahalie, Kavitha Venkatesan, Fana Gebreab, Sebiha Cevik, Niels Klitgord, Changyu Fan, Pascal Braun, Ning Li, Nono Ayivi-Guedehoussou, Elizabeth Dann, Nicolas Bertin, David Szeto, Amelie Dricot, Muhammed A. Yildirim, Chenwei Lin, Anne-Sophie de Smet, Huey-Ling Kao, Christophe Simon, Alex Smolyar, Jin S. Ahn, Muneesh Tewari, Mike Boxem, Stuart Milstein, Haiyuan Yu, Matija Dreze, Jean Vandenhaute, Kristin C. Gunsalus, Michael E. Cusick, David E. Hill, Jan Tavernier, Frederick P. Roth, Marc Vidal posted to worm protein_nw by roys on 2009-09-16 21:08:18 as along with 2 people jbhiatt zwang
	Protein quantification across hundreds of experimental conditions [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 37. (15 September 2009), pp. 15544-15548. by Zia Khan, Joshua S. Bloom, Benjamin A. Garcia, Mona Singh, Leonid Kruglyak posted to proteomics_data protein_quantification protein_expression experimental_conditions by roys on 2009-09-16 06:04:50 as along with 5 people brianb nedwards bennos tmmurali GeeSharpMinor
	Unbiased Reconstruction of a Mammalian Transcriptional Network Mediating Pathogen Responses [My Copy] Science, Vol. 326, No. 5950. (9 October 2009), pp. 257-263. by Ido Amit, Manuel Garber, Nicolas Chevrier, et al.Ana P. Leite, Yoni Donner, Thomas Eisenhaure, Mitchell Guttman, Jennifer K. Grenier, Weibo Li, Or Zuk, Lisa A. Schubert, Brian Birditt, Tal Shay, Alon Goren, Xiaolan Zhang, Zachary Smith, Raquel Deering, Rebecca C. McDonald, Moran Cabili, Bradley E. Bernstein, John L. Rinn, Alex Meissner, David E. Root, Nir Hacohen, Aviv Regev posted to regulatory_nw mammals by roys on 2009-09-16 02:38:22 as along with 9 people xianjun inesdesantiago leliavski TRHvidsten agonzale gbloeb ptrobajo natgoodman tmmurali
	Starvation Protects Germline Stem Cells and Extends Reproductive Longevity in C. elegans [My Copy] Science (27 August 2009), 1178343. by Giana Angelo, Marc R. Van Gilst posted to worm starvation by roys on 2009-08-29 23:12:01 as
	The Systems Biology Graphical Notation [My Copy] Nature Biotechnology, Vol. 27, No. 8. (07 August 2009), pp. 735-741. by Nicolas L. Novere, Michael Hucka, Huaiyu Mi, et al.Stuart Moodie, Falk Schreiber, Anatoly Sorokin, Emek Demir, Katja Wegner, Mirit I. Aladjem, Sarala M. Wimalaratne, Frank T. Bergman, Ralph Gauges, Peter Ghazal, Hideya Kawaji, Lu Li, Yukiko Matsuoka, Alice Villeger, Sarah E. Boyd, Laurence Calzone, Melanie Courtot, Ugur Dogrusoz, Tom C. Freeman, Akira Funahashi, Samik Ghosh, Akiya Jouraku, Sohyoung Kim, Fedor Kolpakov, Augustin Luna, Sven Sahle, Esther Schmidt, Steven Watterson, Guanming Wu, Igor Goryanin, Douglas B. Kell, Chris Sander, Herbert Sauro, Jacky L. Snoep, Kurt Kohn, Hiroaki Kitano posted to systems_biology network_representation biological_networks by roys on 2009-08-16 17:28:28 as along with 37 people and 3 groups greg tonamswish pablocarb josepe abc623 daforerog abhishek_tiwari robertrentzsch ngehlenborg pekrau thegoose bertelsen fgibson Borelli thomaskelder pmendes dullhunk polivares chasmand brianb torfinnnome guhjy Zephyrus lenov reyez allysonlister apocapoc renatomilani VGreiff druvus sjcockell jandot megraw leliavski frohike fpattyn jhyang Orengo Group Journal Picks Journal picks Neuroblastoma
	Identification of a topological characteristic responsible for the biological robustness of regulatory networks. [My Copy] PLoS computational biology, Vol. 5, No. 7. (24 July 2009), e1000442. by Yangle Wu, Xiaomeng Zhang, Jianglei Yu, Qi Ouyang posted to robustness regulatory_nw by roys on 2009-08-16 03:34:32 as along with 7 people and 2 groups jjray jago winterstream phoenixzxl reyez tinatoni TRHvidsten Software-Architecture Integrative Expertise for Global Health
	Stem Cell Proliferation and Quiescence—Two Sides of the Same Coin [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (24 July 2009), e1000447. by Ingmar Glauche, Kateri Moore, Lars Thielecke, Katrin Horn, Markus Loeffler, Ingo Roeder posted to quiescence by roys on 2009-08-16 03:32:37 as along with 1 person kentsis
	Geometric De-noising of Protein-Protein Interaction Networks [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (7 August 2009), e1000454. by Oleksii Kuchaiev, Marija Rašajski, Desmond J. Higham, Nataša Pržulj posted to protein_nw_quality protein_nw protein_interaction_confidence by roys on 2009-08-16 03:29:57 as along with 8 people and 1 group CorinYeats klexa tmmurali grahamc zwang robfsouza phoenixzxl kiekyon Orengo Group Journal Picks
	Quantification of the yeast transcriptome by single-molecule sequencing [My Copy] Nat Biotech, Vol. 27, No. 7. (July 2009), pp. 652-658. by Doron Lipson, Tal Raz, Alix Kieu, et al.Daniel R. Jones, Eldar Giladi, Edward Thayer, John F. Thompson, Stan Letovsky, Patrice Milos, Marie Causey posted to single_molecule sequencing by roys on 2009-08-16 03:19:28 as along with 8 people venancio psique xingxu guhjy scjparker shikin fenghezi neils
	Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans. [My Copy] Nature, Vol. 460, No. 7256. (6 August 2009), pp. 762-765. by Johan Malmström, Martin Beck, Alexander Schmidt, Vinzenz Lange, Eric W. Deutsch, Ruedi Aebersold posted to protein_expression by roys on 2009-08-16 00:06:30 as along with 4 people brianb sjcockell jbhiatt absterga
	Coordinated posttranscriptional mRNA population dynamics during T-cell activation [My Copy] Mol Syst Biol, Vol. 5 (28 July 2009) by Neelanjan Mukherjee, Patrick J. Lager, Matthew B. Friedersdorf, Marshall A. Thompson, Jack D. Keene posted to rna_mrna_nw networks by roys on 2009-08-15 03:02:37 as
	Systems biology and the virtual physiological human [My Copy] Mol Syst Biol, Vol. 5 (28 July 2009) by Peter Kohl, Denis Noble posted to systems_biology review by roys on 2009-08-15 02:44:55 as along with 2 people and 1 group qayub reyez Journal picks
	Quantitative approaches in developmental biology [My Copy] Nat Rev Genet, Vol. 10, No. 8. (August 2009), pp. 517-530. by Andrew C. Oates, Nicole Gorfinkiel, Marcos Gonzalez-Gaitan, Carl-Philipp Heisenberg posted to review development by roys on 2009-08-15 02:28:52 as along with 3 people misonneh leliavski megraw
	Sequence physical properties encode the global organization of protein structure space [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 34. (25 August 2009), pp. 14345-14348. by S. Rackovsky posted to protein_domains protein_complexity by roys on 2009-08-14 22:54:00 as along with 3 people zwang phoenixzxl kevinchannon
	Transcriptional response to alcohol exposure in Drosophila melanogaster. [My Copy] Genome biology, Vol. 7, No. 10. (20 October 2006), R95. by Tatiana V. Morozova, Robert R. Anholt, Trudy F. Mackay posted to eqtl drosophila alcoholism by roys on 2009-08-13 08:32:02 as
	From signatures to models: understanding cancer using microarrays [My Copy] Nature Genetics, Vol. 37 Suppl (01 June 2005), pp. S38-S45. by Eran Segal, Nir Friedman, Naftali Kaminski, Aviv Regev, Daphne Koller posted to transcription_modules module_nw condition_specific_response cancer by roys on 2009-08-13 05:11:18 as along with 13 people and 1 group bertelsen chasmand lwaldron cswinburne aalibes textoris troels_marstrand wnpx nirfriedman rdiaz sampath shikin srp33 GeneGo

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protein_nw	44
bayesian_networks	41
biological_networks	39
gene_expression	38
fly	31
network_inference	30
causality	28
neuroscience	27
networks	25
regulatory_nw	23
tfnets	22
eqtl	21
yeast	21
condition_specific_nw	19
metabolic_nw	18
clustering	17
data_integration	17
gene_expression_nw	17
tissue_specific_nw	17
cancer	14
condition_specific_response	14
evolution	14
markov_networks	14
statistical_relational_models	13
diseases	12
human	12
qtl	12
review	12
signaling_nw	12
comparative_genomics	11
structure_learning	11
tissue_specific_expression	11
genetic_nw	10
species_specific_nw	10
timeseries	10
development	9
graphical_models	9
network_motifs	9
protein_expression	9
regnet	9
differential_expression	8
mrf	8
systems_biology	8
transcription_modules	8
mental_diseases	7
metabolic_flux	7
mouse	7
protein_domains	7
tfnet	7
undirected_graphical_models	7
ca	6
gene_ontology	6
graph_theory	6
hierarchical_models	6
information_theory	6
protein_nw_quality	6
subnw	6
bnet	5
combinatorial_control	5
context_sensitive	5
mcmc	5
mixture_model	5
module_nw	5
multinet	5
nw_modularity	5
protein-dna	5
protein-dna_interaction_prediction	5
quiescence	5
stress	5
supervised_learning	5
tfprograms	5
topic_models	5
approximate_inference	4
classification	4
context_specific_indep	4
dynamics	4
glucose_response	4
lda	4
modularity	4
mrna_protein_correlation	4
nw_inference_method_comparison	4
nwsim	4
protein_domain_sequences	4
protein_interaction_confidence	4
score_function	4
worm	4
dependency_networks	3
ecoli	3
expression_correlation	3
factor_graphs	3
gaussian_processes	3
gene_regulation	3
genome_wide_assoc	3
graph_clustering	3
graphical_gaussian	3
graphs	3
hidden_vars	3
higher_order_dependencies	3
imp_aminoacids	3
mammals	3
metabolite_expression	3
metagenomics	3
mtl	3
ncrna	3
regression	3
regulatory	3
rewiring	3
scalable_nw_learning	3
software	3
starvation	3
stress_responses	3
structural_em	3
aging	2
annotation	2
bde	2
biclustering	2
carbon_metabolism	2
celegans	2
conditional_correlation	2
crfs	2
database	2
dbn	2
decomposable	2
dirichlet_process	2
fba	2
fdr	2
flow_cytometry	2
flow_networks	2
functional_networks	2
genome_complexity	2
growth_control	2
hmms	2
inference	2
loopy_belief_propogation	2
markov_boundary	2
maximum_entropy	2
maximum_likelihood	2
mdl	2
mutual_information	2
noise_expression	2
nw	2
nw_evolution	2
ontology_similarity	2
param_est	2
post_transcriptional	2
prm	2
protein_complexity	2
protein_function_pred	2
proteome_comparison	2
pseudolikelihood	2
regulatory_networks	2
relational_markov_nw	2
rnai	2
sequence	2
similarity_nw	2
snp	2
stationary_phase	2
structured_prior	2
toolkits	2
worm_regulatory_nw	2
active	1
active_learning	1
alcoholism	1
aminoacid_residues	1
bacteria	1
bayesian_models	1
boolean	1
bounded_tree_width	1
canonical_correlation	1
cell_populations	1
chipseqrev	1
community_structure	1
comparitive_analysis	1
computational_biology	1
crp	1
data_pooling	1
dna	1
dnadamage	1
dream	1
drosophila	1
drug_target_pred	1
edgetic	1
emap	1
entropy	1
evolutionary_developmental_biology	1
evolution_complexity	1
experimental_conditions	1
fold_prediction	1
forward_genetics	1
fungi	1
gene_duplication	1
gene_interactions	1
general	1
generalize_pseudo_likelihood	1
gene_ranking	1
gene_set_analysis	1
genomes	1
genomic_rearrangements	1
glycine	1
growth	1
gwa	1
haplotype	1
high_resolution_network	1
image_analysis	1
imaging	1
imago	1
intact	1
interventions	1
kitano02	1
laplacian	1
lasso	1
learning	1
logic_nw	1
low_complexity_regions	1
mag	1
mdags	1
microrna	1
mixture_of_experts	1
model_counting	1
modencode	1
moma	1
mrfs	1
ms	1
mt	1
multi_information	1
multinets	1
multiple_patient_data	1
multitask_learning	1
nested_effect_models	1
network_representation	1
nextgen_sequencing	1
nmf	1
nucleosome	1
nutrient_limitation	1
nw_alignment	1
nw_schema	1
omni	1
osmotic_stress	1
overlap_clustering	1
partition_function	1
pdags	1
perturbations	1
petrinet	1
phenotype_correlation	1
phenotypic_correlation	1
probability_distribution_spectral_method	1
proline	1
protein_degradation	1
protein_interactions	1
protein_quantification	1
proteomics_data	1
rna_mrna_nw	1
rnaseqrev	1
robustness	1
room	1
sam	1
schizophrenia	1
sem	1
semantic_similarity	1
sequencing	1
simulation	1
single_cell	1
single_molecule	1
sparse_candidate	1
species_data	1
spline	1
statistical_learning	1
structured_classification	1
sum_product	1
svm	1
synthetic_biology	1
tokha07	1
tor	1
tra	1
transcription_factor_binding_sites	1
transfer_learning	1
tree_distributions	1
unsuperviselearning	1
workshop	1

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