roys's causality [28 articles] Export

Recent papers added to roys's library classified by the tag causality. You can also see everyone's causality.

	Experimentally based sea urchin gene regulatory network and the causal explanation of developmental phenomenology [My Copy] Wiley Interdisciplinary Reviews: Systems Biology and Medicine, Vol. 9999, No. 9999. (2009), n/a. by Smadar B. De-Leon, Eric H. Davidson posted to causality development gene_regulation regulatory_nw by roys on 2009-07-20 16:27:57 as
	Granger causality vs. dynamic Bayesian network inference: a comparative study [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 122. by Cunlu Zou, Jianfeng Feng posted to bayesian_networks causality by roys on 2009-07-14 02:50:15 as along with 4 people rdiaz Borelli TRHvidsten zwang
	Causal inference of regulator-target pairs by gene mapping of expression phenotypes [My Copy] BMC Genomics, Vol. 7, No. 1. (2006), 125. by David Kulp, Manjunatha Jagalur posted to causality eqtl regulatory_nw by roys on 2009-06-04 07:40:38 as along with 4 people ajbattle Borelli dipenps caseybrown
	Gene network inference via structural equation modeling in genetical genomics experiments. [My Copy] Genetics, Vol. 178, No. 3. (3 March 2008), pp. 1763-1776. by B. Liu, A. de la Fuente, I. Hoeschele posted to causality sem by roys on 2009-06-04 07:18:13 as along with 8 people and 1 group Scis0000002 orzenil dpollard raiyar xingxu caseybrown smgomez guhjy EisenLab
	Causal Explorer: A Causal Probabilistic Network Learning Toolkit for Biomedical Discovery [My Copy] In Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Scienes, METMBS '03, June 23 - 26, 2003, Las Vegas, Nevada, USA (2003), pp. 371-376. by Constantin F. Aliferis, Ioannis Tsamardinos, Alexander R. Statnikov, Laura E. Brown edited by Faramarz Valafar, Homayoun Valafar, Faramarz Valafar, Homayoun Valafar posted to bayesian_networks causality software structure_learning by roys on 2009-05-26 22:52:13 as along with 1 person naegele
	Novel integrative genomics strategies to identify genes for complex traits. [My Copy] Anim Genet, Vol. 37 Suppl 1 (August 2006), pp. 18-23. by E. E. Schadt posted to causality data_integration diseases eqtl by roys on 2009-05-25 03:44:03 as along with 2 people manduca fisherp
	Inferring cellular networks - a review [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 6. (2007), S5. by Florian Markowetz, Rainer Spang posted to biological_networks causality gene_expression network_inference by roys on 2009-05-24 18:02:13 as along with 15 people jaspervoskuilen antonkratz daforerog chica ocs cswinburne ndiaz edwardmorrissey guhjy tmmurali shigepong dejori heliopais bertelsen czeller
	A Differential Wiring Analysis of Expression Data Correctly Identifies the Gene Containing the Causal Mutation [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (1 May 2009), e1000382. by Nicholas J. Hudson, Antonio Reverter, Brian P. Dalrymple posted to causality gene_expression gene_expression_nw by roys on 2009-05-10 21:11:34 as along with 10 people rdiaz guhjy tmmurali Borelli giovanni cabbagesofdoom chrisamiller dswan ptrobajo dolchan
	Toward accurate reconstruction of functional protein networks. [My Copy] Molecular systems biology, Vol. 5 (17 March 2009) by Nir Yosef, Lior Ungar, Einat Zalckvar, et al.Adi Kimchi, Martin Kupiec, Eytan Ruppin, Roded Sharan posted to causality data_integration flow_networks protein_nw subnw by roys on 2009-04-20 03:07:44 as along with 6 people jfr poirel zwang renatomilani phoenixzxl biomcgary
	Causal Protein-Signaling Networks Derived from Multiparameter Single-Cell Data [My Copy] Science, Vol. 308, No. 5721. (22 April 2005), pp. 523-529. by Karen Sachs, Omar Perez, Dana Pe'er, Douglas A. Lauffenburger, Garry P. Nolan posted to bayesian_networks causality signaling_nw by roys on 2009-03-31 03:34:48 as along with 23 people and 1 group pkm phoenixzxl sameersoi abhishek_tiwari poirel frohike aviad_work czeller emptyhb kentsis kaarsinogen balajis rand_bayes ryang wnpx os252 j3xucite noano koller jhatrimatri cdppublications lp2 saman_vp CDP
	Mapping complex disease traits with global gene expression. [My Copy] Nature reviews. Genetics, Vol. 10, No. 3. (01 March 2009), pp. 184-194. by William Cookson, Liming Liang, Gonçalo Abecasis, Miriam Moffatt, Mark Lathrop posted to causality eqtl by roys on 2009-03-29 21:31:53 as along with 12 people and 1 group lianglim daforerog xingxu sameersoi turnersd guhjy wimufi Zephyrus provero buyske rdiaz pkonings cube_and_beyond
	Moving toward a system genetics view of disease. [My Copy] Mamm Genome (26 July 2007) by Solveig K. Sieberts, Eric E. Schadt posted to causality qtl by roys on 2009-03-29 21:04:41 as along with 7 people and 2 groups flbarroso daforerog guhjy dchughes jo_davies lp2 raiyar G4ID Genetics-of-Gambling
	An integrative genomics approach to infer causal associations between gene expression and disease. [My Copy] Nature genetics, Vol. 37, No. 7. (19 July 2005), pp. 710-717. by Eric E. Schadt, John Lamb, Xia Yang, et al.Jun Zhu, Steve Edwards, Debraj Guhathakurta, Solveig K. Sieberts, Stephanie Monks, Marc Reitman, Chunsheng Zhang, Pek Yee Y. Lum, Amy Leonardson, Rolf Thieringer, Joseph M. Metzger, Liming Yang, John Castle, Haoyuan Zhu, Shera F. Kash, Thomas A. Drake, Alan Sachs, Aldons J. Lusis posted to causality qtl by roys on 2009-03-25 05:11:47 as along with 17 people and 1 group mnishimu nicholso lawraga ocs pcahan1 tuck brant ckehl koller giovanni lp2 dejori natstreet jo_davies caseybrown chrisamiller mitko GeschwindLab
	Increasing the Power to Detect Causal Associations by Combining Genotypic and Expression Data in Segregating Populations [My Copy] PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e69. by Jun Zhu, Matthew C. Wiener, Chunsheng Zhang, et al.Arthur Fridman, Eric Minch, Pek Y. Lum, Jeffrey R. Sachs, Eric E. Schadt posted to causality qtl by roys on 2009-03-25 05:06:53 as along with 8 people nicholso brianb jfr hms jo_davies semrich tmmurali beete
	Active Learning of Causal Networks with Intervention Experiments and Optimal Designs [My Copy] Journal of Machine Learning Research, Vol. 9 (November 2008), pp. 2523-2547. by Yang-Bo He, Zhi Geng posted to active_learning causality interventions by roys on 2009-03-24 22:27:19 as along with 1 person sdvillal
	From correlation to causation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data [My Copy] BMC Systems Biology, Vol. 1, No. 1. (2007), 37. by Rainer O. Rhein, Korbinian Strimmer posted to causality regulatory_nw by roys on 2009-03-24 00:26:09 as along with 8 people mqbphcw3 capitall nolodie druvus wnpx GeeSharpMinor jo_davies heliopais
	Variations in DNA elucidate molecular networks that cause disease. [My Copy] Nature, Vol. 452, No. 7186. (27 March 2008), pp. 429-435. by Yanqing Chen, Jun Zhu, Pek Yee Y. Lum, et al.Xia Yang, Shirly Pinto, Douglas J. MacNeil, Chunsheng Zhang, John Lamb, Stephen Edwards, Solveig K. Sieberts, Amy Leonardson, Lawrence W. Castellini, Susanna Wang, Marie-France F. Champy, Bin Zhang, Valur Emilsson, Sudheer Doss, Anatole Ghazalpour, Steve Horvath, Thomas A. Drake, Aldons J. Lusis, Eric E. Schadt posted to causality diseases gene_expression_nw qtl by roys on 2009-03-22 21:06:54 as along with 22 people and 2 groups mnishimu Zephyrus biomcgary daforerog druvus nicklynch semrich brianb jbsaltz djkt raiyar lp2 jo_davies shikin caseybrown ptrobajo guhjy echinotrix natstreet sanchezbuelna jfr chrisamiller 4th_floor_JC GeneGo
	Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity [My Copy] Nature Genetics, Vol. 41, No. 3. (22 February 2009), pp. 316-323. by Esti Yeger-Lotem, Laura Riva, Linhui J. Su, et al.Aaron D. Gitler, Anil G. Cashikar, Oliver D. King, Pavan K. Auluck, Melissa L. Geddie, Julie S. Valastyan, David R. Karger, Susan Lindquist, Ernest Fraenkel posted to biological_networks causality flow_networks qtl by roys on 2009-03-22 19:45:34 as along with 5 people tmmurali stasaki absterga provero psique
	Using Network Component Analysis to Dissect Regulatory Networks Mediated by Transcription Factors in Yeast [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (20 March 2009), e1000311. by Chun Ye, Simon J. Galbraith, James C. Liao, Eleazar Eskin posted to causality qtl tfnets yeast by roys on 2009-03-22 01:46:04 as along with 5 people TRHvidsten svenrahmann dolchan idonaldson rdiaz
	Algorithms for Large Scale Markov Blanket Discovery [My Copy] In In The 16th International FLAIRS Conference, St (2003), pp. 376-380. by Ioannis Tsamardinos, Constantin F. Aliferis, Er Statnikov posted to causality markov_boundary markov_networks structure_learning by roys on 2009-03-03 04:36:33 as
	Reverse engineering the genotype\|[ndash]\|phenotype map with natural genetic variation [My Copy] Nature, Vol. 456, No. 7223. (10 December 2008), pp. 738-744. by Matthew V. Rockman posted to biological_networks causality by roys on 2009-03-02 02:54:49 as along with 15 people and 1 group gdb carlk Keywan TRHvidsten jfr Zephyrus mjoach sg45653 natstreet druvus sriesenfeld lp2 pkonings stringertheory djkt Roswell Cancer Crosstalk
	Harnessing naturally randomized transcription to infer regulatory relationships among genes [My Copy] Genome Biology, Vol. 8 (11 October 2007), R219. by Lin S. Chen, Frank Emmert-Streib, John D. Storey posted to biological_networks causality tfnets by roys on 2009-03-01 18:28:05 as along with 1 person caseybrown
	SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 13. (1 July 2007) by Oved Ourfali, Tomer Shlomi, Trey Ideker, Eytan Ruppin, Roded Sharan posted to biological_networks causality signaling_nw by roys on 2009-02-28 19:46:21 as along with 2 people ptrobajo guhjy
	Learning causal networks from systems biology time course data: an effective model selection procedure for the vector autoregressive process. [My Copy] BMC Bioinformatics, Vol. 8 Suppl 2 (2007) by Rainer Opgen-Rhein, Korbinian Strimmer posted to causality gene_expression_nw inference regulatory_nw timeseries by roys on 2009-02-26 05:10:31 as along with 1 person shigepong
	Causal inference from graphical models [My Copy] (2001) by S. Lauritzen posted to causality graphical_models by roys on 2008-07-11 18:29:29 as along with 4 people ansobol Borelli christoph_study sugarexpletive
	Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks. [My Copy] Nature genetics, Vol. 40, No. 7. (15 July 2008), pp. 854-861. by Jun Zhu, Bin Zhang, Erin N. Smith, et al.Becky Drees, Rachel B. Brem, Leonid Kruglyak, Roger E. Bumgarner, Eric E. Schadt posted to causality network_inference nw_modularity by roys on 2008-06-26 18:39:04 as along with 19 people and 1 group JoeBanks arider1 megraw TRHvidsten siebert ggallone jo_davies suteedee burak realzhang kengg maralena ptrobajo tmmurali guhjy marck caseybrown djkt srp33 Jarman Lab
	Discerning static and causal interactions in genome-wide reverse engineering problems. [My Copy] Bioinformatics (Oxford, England) (8 May 2008) by M Zampieri, N Soranzo, C Altafini posted to causality conditional_correlation regnet by roys on 2008-05-15 03:58:46 as along with 6 people dolchan rdiaz guhjy tmmurali verdicchio balicea
	Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical Gaussian models and Bayesian networks. [My Copy] Bioinformatics (14 July 2006) by Adriano V V. Werhli, Marco Grzegorczyk, Dirk Husmeier posted to bnet causality structure_learning by roys on 2007-12-14 02:15:42 as along with 3 people wnpx frohike edwardmorrissey

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protein_nw	44
bayesian_networks	42
biological_networks	39
gene_expression	38
fly	32
network_inference	30
causality	28
neuroscience	27
networks	25
tfnets	24
regulatory_nw	23
yeast	21
eqtl	21
evolution	21
condition_specific_nw	19
metabolic_nw	18
data_integration	18
gene_expression_nw	17
tissue_specific_nw	17
clustering	17
comparative_genomics	17
cancer	14
markov_networks	14
condition_specific_response	14
human	13
statistical_relational_models	13
structure_learning	12
qtl	12
review	12
signaling_nw	12
diseases	12
tissue_specific_expression	11
genetic_nw	10
timeseries	10
regnet	10
species_specific_nw	10
network_motifs	9
development	9
protein_expression	9
graphical_models	9
combinatorial_control	8
tfprograms	8
mrf	8
differential_expression	8
tfnet	8
transcription_modules	8
systems_biology	8
tfbs	7
protein-dna_interaction_prediction	7
metabolic_flux	7
protein_domains	7
undirected_graphical_models	7
mental_diseases	7
mouse	7
hierarchical_models	6
gene_ontology	6
protein_nw_quality	6
subnw	6
module_nw	6
ca	6
information_theory	6
graph_theory	6
supervised_learning	5
quiescence	5
topic_models	5
mcmc	5
context_sensitive	5
worm	5
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protein-dna	5
stress	5
multinet	5
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score_function	4
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glucose_response	4
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dynamics	4
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lda	4
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starvation	3
structural_em	3
rewiring	3
gene_regulation	3
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mammals	3
stress_responses	3
higher_order_dependencies	3
graphical_gaussian	3
motif_discovery	3
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graph_clustering	3
gaussian_processes	3
expression_correlation	3
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ecoli	3
worm_regulatory_nw	3
graphs	3
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mtl	3
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regulatory	3
hidden_vars	3
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imp_aminoacids	3
factor_graphs	3
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prm	2
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snp	2
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chipseqrev	1
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ms	1
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alignments	1
canonical_correlation	1
omni	1
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moma	1
dna	1
experimental_conditions	1
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sem	1
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crp	1
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mt	1
imago	1
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boolean	1
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tra	1
tor	1
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alcoholism	1
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logic_nw	1
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dnadamage	1
emap	1
svm	1
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edgetic	1
entropy	1
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kitano02	1
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room	1
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gwa	1
drosophila	1
active_learning	1
phylogenetic_reconstruction	1
evolutionary_developmental_biology	1
mag	1
overlap_clustering	1
transfer_learning	1
intact	1
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glycine	1
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nucleosome	1
mrfs	1
tokha07	1
nw_alignment	1
nw_schema	1
community_structure	1
multiple_patient_data	1

roys's causality [28 articles] Export

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