roys's condition_specific_nw [19 articles] Export

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	Reconstructing dynamic regulatory maps [My Copy] Molecular Systems Biology, Vol. 3 (16 January 2007) by Jason Ernst, Oded Vainas, Christopher T. Harbison, Itamar Simon, Ziv Bar-Joseph posted to condition_specific_nw condition_specific_response dynamics regulatory stress by roys on 2009-06-30 06:35:20 as along with 12 people and 1 group nicholasflann beete tienholin antonkratz behindtherabbit okarsligil aswin mikaelhuss SeungjoonOh berthoums natstreet jo_davies Bioinformatics
	A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules [My Copy] Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255. by Joshua M. Stuart, Eran Segal, Daphne Koller, Stuart K. Kim posted to condition_specific_nw by roys on 2009-06-06 01:16:20 as along with 24 people and 7 groups sficklin thegoose2 cswinburne carlk saket pengchy nolodie jeremymiller tharris dragonrez textoris lfriedl balajis nuke2005 maryee tardigrade opheliav wnpx neveaire macle raylim lp2 karfunkel vertikalist C. elegans / WormBase kdl Biostatistics Computational-Genomics Bioinformatics Neuroscience BTS-PT-AS-CS
	Oncogenic pathway signatures in human cancers as a guide to targeted therapies. [My Copy] Nature, Vol. 439, No. 7074. (19 January 2006), pp. 353-357. by Andrea H. Bild, Guang Yao, Jeffrey T. Chang, et al.Quanli Wang, Anil Potti, Dawn Chasse, Mary-Beth B. Joshi, David Harpole, Johnathan M. Lancaster, Andrew Berchuck, John A. Olson, Jeffrey R. Marks, Holly K. Dressman, Mike West, Joseph R. Nevins posted to cancer condition_specific_nw by roys on 2009-05-18 00:26:23 as along with 15 people bertelsen ipark-kaist zufar Yanno guhjy kentsis mfenner ajeffs tuck maryee eckart_bindewald frohike Ao_Li2007 waghsk srp33
	Comparative expression pathway analysis of human and canine mammary tumors [My Copy] BMC Genomics, Vol. 10 (27 March 2009), 135. by Paolo, Emanuele de Rinaldis posted to cancer condition_specific_nw networks by roys on 2009-05-18 00:20:52 as along with 1 person shikin
	Inference of functional networks of condition-specific response--a case study of quiescence in yeast. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2009), pp. 51-62. by S. Roy, T. Lane, M. Werner-Washburne, D. Martinez posted to condition_specific_nw mrf by roys on 2009-04-27 17:14:19 as
	Module networks revisited: computational assessment and prioritization of model predictions [My Copy] Bioinformatics, Vol. 25, No. 4. (15 February 2009), pp. 490-496. by Anagha Joshi, Riet De Smet, Kathleen Marchal, Yves Van de Peer, Tom Michoel posted to condition_specific_nw module_nw by roys on 2009-03-03 03:38:04 as along with 12 people ptrobajo TRHvidsten jfr guhjy tvdbulck mhamada zufar rdiaz druvus verdicchio imina dolchan
	Phosphorylation Networks Regulating JNK Activity in Diverse Genetic Backgrounds [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 453-456. by Chris Bakal, Rune Linding, Flora Llense, et al.Elleard Heffern, Enrique Martin-Blanco, Tony Pawson, Norbert Perrimon posted to condition_specific_nw fly network_inference by roys on 2009-02-16 16:37:14 as along with 5 people lptolik renatomilani zwang marck neils
	Structure and function of a transcriptional network activated by the MAPK Hog1. [My Copy] Nature genetics (19 October 2008) by Andrew P P. Capaldi, Tommy Kaplan, Ying Liu, et al.Naomi Habib, Aviv Regev, Nir Friedman, Erin K K. O'Shea posted to condition_specific_nw networks signaling_nw by roys on 2009-02-16 16:36:53 as along with 4 people jbhiatt raiyar renatomilani tmmurali
	Differential Dependency Network Analysis to Identify Condition-Specific Topological Changes in Biological Networks [My Copy] Bioinformatics (26 December 2008), btn660. by Bai Zhang, Huai Li, Rebecca B. Riggins, et al.Ming Zhan, Jianhua Xuan, Zhen Zhang, Eric P. Hoffman, Robert Clarke, Yue Wang posted to condition_specific_nw dependency_networks by roys on 2009-01-09 21:30:59 as along with 7 people southo bertelsen lptolik mstumpf imina dolchan grahamc
	Identification of functional modules using network topology and high-throughput data. [My Copy] BMC systems biology, Vol. 1, No. 1. (2007), 8. by Igor Ulitsky, Ron Shamir posted to biological_networks condition_specific_nw context_sensitive network_motifs by roys on 2008-11-12 05:15:55 as along with 18 people greg akshayk ptrobajo yaredo isimpson qluo aheilbut zufar frohike tmmurali dragonrez jfr wnpx Ao_Li2007 lyndon bertelsen ellakat carlk
	Similarities and Differences in Genome-Wide Expression Data of Six Organisms [My Copy] PLoS Biol, Vol. 2, No. 1. (15 December 2003), e9. by Sven Bergmann, Jan Ihmels, Naama Barkai posted to condition_specific_nw condition_specific_response context_sensitive by roys on 2008-11-05 16:54:36 as along with 10 people and 3 groups bertelsen thegoose2 floatingpoint tharris dragonrez Ayest RMGraze marcius koller jeremymiller C. elegans / WormBase BioinfoCIPF SGU-CIPF
	A systems approach to mapping DNA damage response pathways. [My Copy] Science (New York, N.Y.), Vol. 312, No. 5776. (19 May 2006), pp. 1054-1059. by C. T. Workman, H. C. Mak, S. McCuine, et al.J. B. Tagne, M. Agarwal, O. Ozier, T. J. Begley, L. D. Samson, T. Ideker posted to condition_specific_nw protein-dna_interaction_prediction by roys on 2008-11-03 02:53:01 as along with 9 people nzm arsyed isimpson biozhang2001 jfr nirfriedman cconboy koller tmmurali
	Inferring Condition-Specific Modulation of Transcription Factor Activity in Yeast through Regulon-Based Analysis of Genomewide Expression [My Copy] PLoS ONE, Vol. 3, No. 9. (2008), e3112. by André Boorsma, Xiang-Jun Lu, Anna Zakrzewska, Frans M. Klis, Harmen J. Bussemaker posted to condition_specific_nw condition_specific_response by roys on 2008-09-22 00:29:07 as along with 3 people hge hplatero lusk
	Inferring differentiation pathways from gene expression [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i156-164. by Ivan G. Costa, Stefan Roepcke, Christoph Hafemeister, Alexander Schliep posted to condition_specific_nw by roys on 2008-06-27 18:03:05 as along with 2 people renatomilani balicea
	Context-Specific Metabolic Networks Are Consistent with Experiments [My Copy] PLoS Comput Biol, Vol. 4, No. 5. (16 May 2008), e1000082. by Scott A. Becker, Bernhard O. Palsson posted to condition_specific_nw metabolic_nw by roys on 2008-06-08 02:58:02 as along with 4 people JeremyZucker guhjy aramesh2 ptrobajo
	Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 10. (2007), S2. by Xiaoyu Chen, Mathieu Blanchette posted to condition_specific_nw tissue_specific_nw by roys on 2008-03-13 05:09:04 as along with 2 people jxl maximilianh
	Similarities and differences of gene expression in yeast stress conditions [My Copy] Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. e184-e190. by Rokhlenko, Oleg, Wexler, Ydo, Yakhini, Zohar posted to condition_specific_nw gene_expression_nw by roys on 2008-02-01 02:54:14 as
	High-resolution analysis of condition-specific regulatory modules in Saccharomyces cerevisiae [My Copy] Genome Biology, Vol. 9 (03 January 2008), R2. by Hun-Goo Lee, Hyo-Soo Lee, Sang-Hoon Jeon, Tae-Hoon Chung, Young-Sung Lim, Won-Ki Huh posted to condition_specific_nw condition_specific_response tfnets by roys on 2008-01-11 06:24:36 as along with 3 people lusk ptrobajo maximilianh
	Characterizing disease states from topological properties of transcriptional regulatory networks. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by D. P. Tuck, H. M. Kluger, Y. Kluger posted to cancer condition_specific_nw tfnets tra transcription_modules by roys on 2007-11-06 04:08:37 as along with 2 people Scis0000002 jfr

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protein_nw	44
bayesian_networks	42
biological_networks	39
gene_expression	38
fly	32
network_inference	30
causality	28
neuroscience	27
networks	25
regulatory_nw	24
tfnets	24
yeast	21
eqtl	21
evolution	21
condition_specific_nw	19
metabolic_nw	18
data_integration	18
gene_expression_nw	17
tissue_specific_nw	17
clustering	17
comparative_genomics	17
cancer	14
markov_networks	14
condition_specific_response	14
human	13
statistical_relational_models	13
structure_learning	12
qtl	12
review	12
signaling_nw	12
diseases	12
tissue_specific_expression	11
genetic_nw	10
timeseries	10
regnet	10
species_specific_nw	10
network_motifs	9
development	9
protein_expression	9
graphical_models	9
combinatorial_control	8
tfprograms	8
mrf	8
differential_expression	8
tfnet	8
transcription_modules	8
systems_biology	8
tfbs	7
protein-dna_interaction_prediction	7
metabolic_flux	7
protein_domains	7
undirected_graphical_models	7
mental_diseases	7
mouse	7
hierarchical_models	6
gene_ontology	6
protein_nw_quality	6
subnw	6
module_nw	6
ca	6
information_theory	6
graph_theory	6
supervised_learning	5
quiescence	5
topic_models	5
mcmc	5
context_sensitive	5
worm	5
bnet	5
protein-dna	5
stress	5
multinet	5
nw_modularity	5
mixture_model	5
score_function	4
approximate_inference	4
protein_domain_sequences	4
glucose_response	4
nw_inference_method_comparison	4
dynamics	4
mrna_protein_correlation	4
nwsim	4
transcription_factor_binding_sites	4
context_specific_indep	4
protein_interaction_confidence	4
modularity	4
classification	4
lda	4
genome_wide_assoc	3
starvation	3
structural_em	3
rewiring	3
gene_regulation	3
regulatory_networks	3
mammals	3
stress_responses	3
higher_order_dependencies	3
graphical_gaussian	3
motif_discovery	3
scalable_nw_learning	3
graph_clustering	3
gaussian_processes	3
expression_correlation	3
dependency_networks	3
database	3
ecoli	3
worm_regulatory_nw	3
graphs	3
metabolite_expression	3
ncrna	3
mtl	3
regression	3
regulatory	3
hidden_vars	3
protein_dna_interactions	3
software	3
metagenomics	3
imp_aminoacids	3
factor_graphs	3
rnai	2
aging	2
proteome_comparison	2
inference	2
pseudolikelihood	2
biclustering	2
post_transcriptional	2
dirichlet_process	2
relational_markov_nw	2
toolkits	2
prm	2
conditional_correlation	2
functional_networks	2
fdr	2
maximum_likelihood	2
stationary_phase	2
dbn	2
bde	2
sequence	2
loopy_belief_propogation	2
param_est	2
data_pooling	2
growth_control	2
modules	2
decomposable	2
genome_complexity	2
fba	2
active_learning	2
expression_divergence	2
noise_expression	2
mdl	2
protein_complexity	2
similarity_nw	2
carbon_metabolism	2
ontology_similarity	2
flow_networks	2
hmms	2
protein_function_pred	2
annotation	2
markov_boundary	2
flow_cytometry	2
crfs	2
structured_prior	2
celegans	2
nw_evolution	2
maximum_entropy	2
mutual_information	2
nw	2
snp	2
microrna	1
haplotype	1
partition_function	1
sam	1
genomes	1
ms	1
active	1
fungi	1
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protein_interactions	1
sum_product	1
comparitive_analysis	1
multinets	1
petrinet	1
aminoacid_residues	1
dream	1
nutrient_limitation	1
imaging	1
forward_genetics	1
statistical_learning	1
rnaseqrev	1
proline	1
image_analysis	1
gene_duplication	1
spline	1
workshop	1
single_cell	1
drug_target_pred	1
synthetic_biology	1
alignments	1
canonical_correlation	1
omni	1
motif_libraries	1
moma	1
dna	1
experimental_conditions	1
cell_populations	1
sem	1
multitask_learning	1
osmotic_stress	1
crp	1
probability_distribution_spectral_method	1
motif_clustering	1
unsuperviselearning	1
high_resolution_network	1
gene_interactions	1
nmf	1
model_counting	1
motif_identification	1
bacteria	1
mt	1
imago	1
phenotype_correlation	1
boolean	1
tissue_specificity	1
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sparse_candidate	1
proteomics_data	1
pdags	1
nested_effect_models	1
protein_degradation	1
fold_prediction	1
phylogenetic_methods	1
mdags	1
interventions	1
evolution_complexity	1
species_data	1
tra	1
tor	1
bayesian_models	1
phenotypic_correlation	1
motifs	1
computational_biology	1
gene_expression_data	1
alcoholism	1
single_molecule	1
bounded_tree_width	1
lasso	1
modencode	1
logic_nw	1
perturbations	1
semantic_similarity	1
dnadamage	1
emap	1
svm	1
network_representation	1
rna_mrna_nw	1
schizophrenia	1
gene_ranking	1
edgetic	1
entropy	1
general	1
generalize_pseudo_likelihood	1
mixture_of_experts	1
kitano02	1
nextgen_sequencing	1
room	1
growth	1
learning	1
low_complexity_regions	1
gwa	1
drosophila	1
phylogenetic_reconstruction	1
evolutionary_developmental_biology	1
mag	1
overlap_clustering	1
transfer_learning	1
intact	1
genomic_rearrangements	1
sequencing	1
robustness	1
structured_classification	1
glycine	1
multi_information	1
tree_distributions	1
gene_set_analysis	1
nucleosome	1
mrfs	1
tokha07	1
nw_alignment	1
nw_schema	1
community_structure	1
multiple_patient_data	1
chipseqrev	1
laplacian	1

roys's condition_specific_nw [19 articles] Export

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