CiteULike: roys's species_specific

Conservation and Evolution of Cis-Regulatory Systems in Ascomycete Fungi

PLoS Biol, Vol. 2, No. 12. (9 November 2004), e398.

by Audrey P. Gasch, Alan M. Moses, Derek Y. Chiang, Hunter B. Fraser, Mark Berardini, Michael B. Eisen

posted to species_specific_nw regulatory_networks comparative_genomics by roys on 2009-10-20 05:38:59 as

along with 6 people and 3 groups matted mbeisen tsackton nickluscombe lusk cisevol EisenLab EBI-regulation cis-regulatory-evolution

Inferring gene regulatory networks from multiple microarray datasets

Bioinformatics, Vol. 22, No. 19. (1 October 2006), pp. 2413-2420.

by Yong Wang, Trupti Joshi, Xiang-Sun Zhang, Dong Xu, Luonan Chen

posted to species_specific_nw comparative_genomics by roys on 2009-10-20 04:33:50 as

along with 5 people antonkratz frohike jhatrimatri natstreet heliopais

Cross-species analysis of biological networks by Bayesian alignment.

Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 29. (18 July 2006), pp. 10967-10972.

by Johannes Berg, Michael Lässig

posted to species_specific_nw by roys on 2009-10-19 03:14:26 as

along with 5 people and 1 group pengchy jeremymiller guhjy adepace bpcusack EisenLab

Cross-species microarray analysis with the OSCAR system suggests an INSR->Pax6->NQO1 neuro-protective pathway in aging and Alzheimer's disease

Nucl. Acids Res., Vol. 35, No. suppl_2. (13 July 2007), pp. W105-114.

by Yue Lu, Xin He, Sheng Zhong

posted to species_specific_nw species_data comparative_genomics by roys on 2009-10-18 20:21:02 as

along with 3 people daforerog guhjy ghattem

Cross species analysis of microarray expression data

Bioinformatics In Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. 1476-1483.

by Yong Lu, Peter Huggins, Ziv Bar-Joseph

posted to species_specific_nw comparative_genomics biological_networks by roys on 2009-10-16 22:39:39 as

along with 13 people and 1 group bsamal jfr daveGerrard ptrobajo guhjy yaredo shikin dswan renatomilani rdiaz thomaskelder natstreet druvus Bioinformatics

Simultaneous inference of biological networks of multiple species from genome-wide data and evolutionary information: a semi-supervised approach

Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2962-2968.

by Hisashi Kashima, Yoshihiro Yamanishi, Tsuyoshi Kato, Masashi Sugiyama, Koji Tsuda

posted to species_specific_nw evolution by roys on 2009-10-16 06:46:51 as

along with 3 people and 1 group jperkins phoenixzxl druvus Orengo Group Journal Picks

A Network of Conserved Damage Survival Pathways Revealed by a Genomic RNAi Screen

PLoS Genet, Vol. 5, No. 6. (19 June 2009), e1000527.

by Dashnamoorthy Ravi, Amy M. Wiles, Selvaraj Bhavani, Jianhua Ruan, Philip Leder, Alexander J. R. Bishop

posted to dnadamage fly protein_nw species_specific_nw stress yeast by roys on 2009-06-29 01:22:10 as

along with 2 people ravidmurthy renatomilani

Divergence in cis-regulatory networks: taking the 'species' out of cross-species analysis

Genome Biology, Vol. 9, No. 11. (2008)

by Robert Zinzen, Eileen Furlong

posted to evolution regulatory_nw species_specific_nw by roys on 2009-06-25 02:38:17 as

along with 4 people and 1 group natstreet maximilianh cisevol caseybrown cis-regulatory-evolution

The Plasmodium protein network diverges from those of other eukaryotes

Nature, Vol. 438, No. 7064. (03 November 2005), pp. 108-112.

by Silpa Suthram, Taylor Sittler, Trey Ideker

posted to protein_nw species_specific_nw by roys on 2009-06-08 03:10:55 as

along with 5 people and 1 group tmmurali dragonrez okarsligil rjarekm gurkanbebek Bioinformatics

Conservation and evolvability in regulatory networks: The evolution of ribosomal regulation in yeast

Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 20. (17 May 2005), pp. 7203-7208.

by Amos Tanay, Aviv Regev, Ron Shamir

posted to species_specific_nw by roys on 2009-06-08 03:02:03 as

along with 3 people and 1 group vingron Schmidtc carlk Bioinformatics

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	Conservation and Evolution of Cis-Regulatory Systems in Ascomycete Fungi [My Copy] PLoS Biol, Vol. 2, No. 12. (9 November 2004), e398. by Audrey P. Gasch, Alan M. Moses, Derek Y. Chiang, Hunter B. Fraser, Mark Berardini, Michael B. Eisen posted to species_specific_nw regulatory_networks comparative_genomics by roys on 2009-10-20 05:38:59 as along with 6 people and 3 groups matted mbeisen tsackton nickluscombe lusk cisevol EisenLab EBI-regulation cis-regulatory-evolution
	Inferring gene regulatory networks from multiple microarray datasets [My Copy] Bioinformatics, Vol. 22, No. 19. (1 October 2006), pp. 2413-2420. by Yong Wang, Trupti Joshi, Xiang-Sun Zhang, Dong Xu, Luonan Chen posted to species_specific_nw comparative_genomics by roys on 2009-10-20 04:33:50 as along with 5 people antonkratz frohike jhatrimatri natstreet heliopais
	Cross-species analysis of biological networks by Bayesian alignment. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 29. (18 July 2006), pp. 10967-10972. by Johannes Berg, Michael Lässig posted to species_specific_nw by roys on 2009-10-19 03:14:26 as along with 5 people and 1 group pengchy jeremymiller guhjy adepace bpcusack EisenLab
	Cross-species microarray analysis with the OSCAR system suggests an INSR->Pax6->NQO1 neuro-protective pathway in aging and Alzheimer's disease [My Copy] Nucl. Acids Res., Vol. 35, No. suppl_2. (13 July 2007), pp. W105-114. by Yue Lu, Xin He, Sheng Zhong posted to species_specific_nw species_data comparative_genomics by roys on 2009-10-18 20:21:02 as along with 3 people daforerog guhjy ghattem
	Cross species analysis of microarray expression data [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. 1476-1483. by Yong Lu, Peter Huggins, Ziv Bar-Joseph posted to species_specific_nw comparative_genomics biological_networks by roys on 2009-10-16 22:39:39 as along with 13 people and 1 group bsamal jfr daveGerrard ptrobajo guhjy yaredo shikin dswan renatomilani rdiaz thomaskelder natstreet druvus Bioinformatics
	Simultaneous inference of biological networks of multiple species from genome-wide data and evolutionary information: a semi-supervised approach [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2962-2968. by Hisashi Kashima, Yoshihiro Yamanishi, Tsuyoshi Kato, Masashi Sugiyama, Koji Tsuda posted to species_specific_nw evolution by roys on 2009-10-16 06:46:51 as along with 3 people and 1 group jperkins phoenixzxl druvus Orengo Group Journal Picks
	A Network of Conserved Damage Survival Pathways Revealed by a Genomic RNAi Screen [My Copy] PLoS Genet, Vol. 5, No. 6. (19 June 2009), e1000527. by Dashnamoorthy Ravi, Amy M. Wiles, Selvaraj Bhavani, Jianhua Ruan, Philip Leder, Alexander J. R. Bishop posted to dnadamage fly protein_nw species_specific_nw stress yeast by roys on 2009-06-29 01:22:10 as along with 2 people ravidmurthy renatomilani
	Divergence in cis-regulatory networks: taking the 'species' out of cross-species analysis [My Copy] Genome Biology, Vol. 9, No. 11. (2008) by Robert Zinzen, Eileen Furlong posted to evolution regulatory_nw species_specific_nw by roys on 2009-06-25 02:38:17 as along with 4 people and 1 group natstreet maximilianh cisevol caseybrown cis-regulatory-evolution
	The Plasmodium protein network diverges from those of other eukaryotes [My Copy] Nature, Vol. 438, No. 7064. (03 November 2005), pp. 108-112. by Silpa Suthram, Taylor Sittler, Trey Ideker posted to protein_nw species_specific_nw by roys on 2009-06-08 03:10:55 as along with 5 people and 1 group tmmurali dragonrez okarsligil rjarekm gurkanbebek Bioinformatics
	Conservation and evolvability in regulatory networks: The evolution of ribosomal regulation in yeast [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 20. (17 May 2005), pp. 7203-7208. by Amos Tanay, Aviv Regev, Ron Shamir posted to species_specific_nw by roys on 2009-06-08 03:02:03 as along with 3 people and 1 group vingron Schmidtc carlk Bioinformatics

roys's species_specific_nw [10 articles] Export Sort

roys's tags

protein_nw	44
bayesian_networks	42
biological_networks	40
gene_expression	38
fly	32
tfnets	31
network_inference	30
causality	28
evolution	28
neuroscience	27
networks	25
regulatory_nw	24
comparative_genomics	21
yeast	21
eqtl	21
condition_specific_nw	20
metabolic_nw	18
gene_expression_nw	18
data_integration	18
clustering	17
tissue_specific_nw	17
tfbs	16
condition_specific_response	15
cancer	15
markov_networks	14
human	13
signaling_nw	13
statistical_relational_models	13
structure_learning	12
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diseases	12
review	12
combinatorial_control	11
tissue_specific_expression	11
tfprograms	11
network_motifs	10
genetic_nw	10
regnet	10
timeseries	10
species_specific_nw	10
graphical_models	9
tfnet	9
development	9
protein_expression	9
systems_biology	8
differential_expression	8
mrf	8
transcription_modules	8
metabolic_flux	7
protein-dna_interaction_prediction	7
mental_diseases	7
protein_domains	7
mouse	7
undirected_graphical_models	7
module_nw	6
regulatory_networks	6
subnw	6
protein_nw_quality	6
protein-dna	6
hierarchical_models	6
gene_ontology	6
ca	6
information_theory	6
graph_theory	6
nw_modularity	5
bnet	5
supervised_learning	5
topic_models	5
mcmc	5
quiescence	5
protein_dna_interactions	5
worm	5
multinet	5
stress	5
context_sensitive	5
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lda	4
expression_divergence	4
nested_effect_models	4
protein_interaction_confidence	4
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protein_domain_sequences	4
classification	4
nwsim	4
nucleosome	4
glucose_response	4
score_function	4
dynamics	4
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transcription_factor_binding_sites	4
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software	3
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graphical_gaussian	3
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starvation	3
hidden_vars	3
expression_correlation	3
structural_em	3
worm_regulatory_nw	3
higher_order_dependencies	3
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mammals	3
factor_graphs	3
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gene_regulation	3
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genome_wide_assoc	3
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ncrna	3
metabolite_expression	3
graphs	3
mtl	3
ecoli	3
graph_clustering	3
rewiring	3
scalable_nw_learning	3
gaussian_processes	3
hmms	2
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post_transcriptional	2
inference	2
markov_boundary	2
motif_libraries	2
snp	2
noise_expression	2
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crfs	2
proteome_comparison	2
protein_function_pred	2
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