rpatward's library 54 articles Export

	Positive Interactions Promote Public Cooperation [My Copy] Science, Vol. 325, No. 5945. (4 September 2009), pp. 1272-1275. by David G. Rand, Anna Dreber, Tore Ellingsen, Drew Fudenberg, Martin A. Nowak posted to journalclub game cool_stuff by rpatward on 2009-09-04 18:24:12 as along with 8 people and 3 groups biologyeditors ttaga hardin apocapoc momo54 echi AJCann jago ecoo-ce Simulation of operations and interactions Participatory_Methods_for_Development
	Functional Characterization of the Antibiotic Resistance Reservoir in the Human Microflora [My Copy] Science, Vol. 325, No. 5944. (28 August 2009), pp. 1128-1131. by Morten O. A. Sommer, Gautam Dantas, George M. Church posted to metagenomics journalclub antibiotic_resistance_genes by rpatward on 2009-09-04 18:20:27 as along with 4 people and 1 group jgill pkm chriswillmott djkt iSEEM
	A strategy of DNA sequencing employing computer programs. [My Copy] Nucleic acids research, Vol. 6, No. 7. (11 June 1979), pp. 2601-2610. by R. Staden posted to sequencing classic by rpatward on 2009-09-03 20:42:33 as along with 1 person bozdagd
	Cellular or viral protein binding to a cytomegalovirus promoter transcription initiation site: effects on transcription. [My Copy] Journal of virology, Vol. 70, No. 6. (June 1996), pp. 3628-3635. by M. P. Macias, L. Huang, P. E. Lashmit, M. F. Stinski posted to promoter cmv by rpatward on 2009-09-02 01:09:54 as
	Rational design of a super core promoter that enhances gene expression [My Copy] Nature Methods, Vol. 3, No. 11. (23 October 2006), pp. 917-922. by Tamar Juven-Gershon, Susan Cheng, James T. Kadonaga posted to synthetic super_promoter promoter by rpatward on 2009-09-02 00:52:42 as along with 1 person olympos
	A directly repeated sequence in the beta-globin promoter regulates transcription in murine erythroleukemia cells. [My Copy] Molecular and cellular biology, Vol. 10, No. 3. (March 1990), pp. 972-981. by L. L. Stuve, R. M. Myers posted to promoter betaglobin by rpatward on 2009-09-01 19:03:56 as
	High-Efficiency Full-Length cDNA Cloning by Biotinylated CAP Trapper [My Copy] Genomics, Vol. 37, No. 3. (01 November 1996), pp. 327-336. by P. Carninci posted to cage by rpatward on 2009-06-26 01:43:33 as
	Yeast and human TATA-binding proteins have nearly identical DNA sequence requirements for transcription in vitro. [My Copy] Molecular and cellular biology, Vol. 10, No. 8. (August 1990), pp. 3859-3867. by C. R. Wobbe, K. Struhl posted to hela in_vitro tata by rpatward on 2009-06-22 22:05:05 as along with 1 person sonjadaniela
	Diversity and Complexity in DNA Recognition by Transcription Factors [My Copy] Science, Vol. 324, No. 5935. (26 June 2009), pp. 1720-1723. by Gwenael Badis, Michael F. Berger, Anthony A. Philippakis, et al.Shaheynoor Talukder, Andrew R. Gehrke, Savina A. Jaeger, Esther T. Chan, Genita Metzler, Anastasia Vedenko, Xiaoyu Chen, Hanna Kuznetsov, Chi-Fong Wang, David Coburn, Daniel E. Newburger, Quaid Morris, Timothy R. Hughes, Martha L. Bulyk posted to tf_binding by rpatward on 2009-06-02 03:29:27 as along with 21 people and 1 group sconlan isimpson jbhiatt daforerog absterga mingzhi galka8_diploma fenghezi TRHvidsten ilyashl cambray tibbitts dpollard siebert JustinCrocker burak aalibes dipenps roys emptyhb tmmurali RockmanLab
	DNA Sudoku--harnessing high-throughput sequencing for multiplexed specimen analysis. [My Copy] Genome research, Vol. 19, No. 7. (15 July 2009), pp. 1243-1253. by Yaniv Erlich, Kenneth Chang, Assaf Gordon, et al.Roy Ronen, Oron Navon, Michelle Rooks, Gregory J. Hannon posted to multiplexed_sequencing by rpatward on 2009-05-24 20:10:58 as along with 18 people and 1 group orzenil heliopais qayub jandot pkonings jcbarret nlapalu guhjy fenghezi dandaman xingxu djkt ppgardne daforerog n00c jbhiatt natstreet samgj Journal picks
	A code for transcription initiation in mammalian genomes. [My Copy] Genome research, Vol. 18, No. 1. (21 January 2008), pp. 1-12. by M. C. Frith, E. Valen, A. Krogh, Y. Hayashizaki, P. Carninci, A. Sandelin posted to core general_exam promoter tata tata-less by rpatward on 2009-05-08 01:12:41 as along with 12 people megraw guhjy inesdesantiago myrtilus dchughes cabbagezs maximilianh idonaldson oelemento gjuggler ohara gracio
	A transcription factor affinity-based code for mammalian transcription initiation [My Copy] Genome Research, Vol. 19, No. 4. (13 April 2009), pp. 644-656. by Molly Megraw, Fernando Pereira, Shane T. Jensen, Uwe Ohler, Artemis G. Hatzigeorgiou posted to core general_exam promoter tata tata-less by rpatward on 2009-05-08 01:12:04 as along with 9 people and 1 group heliopais guhjy tonamswish siebert biozhang2001 absterga jbhiatt samgj daforerog microRNA
	Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome [My Copy] Genome Research, Vol. 16, No. 1. (January 2006), pp. 1-10. by Sara J. Cooper, Nathan D. Trinklein, Elizabeth D. Anton, Loan Nguyen, Richard M. Myers posted to core encode general_exam promoter transcriptional_regulation by rpatward on 2009-05-05 22:48:46 as along with 4 people absterga troels_marstrand xiaobeizhao olympos
	An Atomic Model of the Interferon-[beta] Enhanceosome [My Copy] Cell, Vol. 129, No. 6. (15 June 2007), pp. 1111-1123. by Daniel Panne, Tom Maniatis, Stephen C. Harrison posted to enhancer general_exam interferon by rpatward on 2009-05-05 22:46:11 as along with 1 person emptyhb
	The enhanceosome [My Copy] Current Opinion in Structural Biology In Theory and simulation / Macromolecular assemblages, Vol. 18, No. 2. (April 2008), pp. 236-242. by Daniel Panne posted to enhancer general_exam interferon by rpatward on 2009-05-05 22:45:42 as along with 1 person amwands
	Assembling the human IFN-beta enhanceosome in solution. [My Copy] Journal of molecular biology, Vol. 384, No. 2. (12 December 2008), pp. 335-348. by A. I. Dragan, R. Carrillo, T. I. Gerasimova, P. L. Privalov posted to enhancer general_exam interferon by rpatward on 2009-05-05 22:44:57 as
	Sp1 and AP2 regulate but do not constitute TATA-less human TAFII55 core promoter activity [My Copy] Nucl. Acids Res., Vol. 30, No. 19. (1 October 2002), pp. 4145-4157. by Tianyuan Zhou, Cheng-Ming Chiang posted to core promoter sp1 tata-less by rpatward on 2009-05-01 23:35:14 as
	Tissue-specific regulatory elements in mammalian promoters [My Copy] Mol Syst Biol, Vol. 3 (16 January 2007) by Andrew D. Smith, Pavel Sumazin, Michael Q. Zhang posted to promoter regulation tissue-specific by rpatward on 2009-05-01 01:09:45 as along with 4 people and 2 groups dchughes SeungjoonOh heliopais roys G4ID Genetics-of-Gambling
	The Nuclear DNA Base 5-Hydroxymethylcytosine Is Present in Purkinje Neurons and the Brain [My Copy] Science, Vol. 324, No. 5929. (15 May 2009), pp. 929-930. by Skirmantas Kriaucionis, Nathaniel Heintz posted to journalclub by rpatward on 2009-04-20 22:48:01 as along with 6 people and 1 group aprickett dkolk01 isimpson GeeSharpMinor rschulz akundaje Jarman Lab
	Local DNA Topography Correlates with Functional Noncoding Regions of the Human Genome [My Copy] Science, Vol. 324, No. 5925. (17 April 2009), pp. 389-392. by Stephen C. J. Parker, Loren Hansen, Hatice O. Abaan, Thomas D. Tullius, Elliott H. Margulies posted to function snp structure by rpatward on 2009-04-17 22:03:53 as along with 38 people and 6 groups daveGerrard operon sujaikumar antonkratz pradiptaray roys gjuggler benjaminsb gdb hagechouchin443 tomtullius scjparker psique orzenil emptyhb ilyashl coela VGreiff APRegier myzhang pkonings akundaje athma absterga timflutre stajich bpcusack jbhiatt djkt dhlbh friendpine dpollard inesdesantiago JustinCrocker aprasad maximilianh idonaldson kshundyak BergmanLab Mycology structural_bioinformatics RockmanLab EisenLab cis-regulatory-evolution
	Enhancer-promoter specificity mediated by DPE or TATA core promoter motifs. [My Copy] Genes & development, Vol. 15, No. 19. (1 October 2001), pp. 2515-2519. by J. E. Butler, J. T. Kadonaga posted to core enhancer promoter by rpatward on 2009-04-17 01:32:32 as along with 2 people jochenG myrtilus
	Coding-sequence determinants of gene expression in Escherichia coli. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5924. (10 April 2009), pp. 255-258. by Grzegorz Kudla, Andrew W. Murray, David Tollervey, Joshua B. Plotkin posted to promoter by rpatward on 2009-04-14 20:14:44 as along with 32 people and 1 group balabu yyfwuhan dbikard kinestetika samgj dswan bpcusack emptyhb sameersoi dpsuslo8 anwazo Vincent_Rouilly kintoki erel10 michaelbarton fenghezi VGreiff ramanuja austin twatanab coela polivares lizbiogen jdbowes operon jasontsai absterga jbhiatt jjray kshundyak zwang friendpine BergmanLab
	Characterization of Transcription from TATA-Less Promoters: Identification of a New Core Promoter Element XCPE2 and Analysis of Factor Requirements [My Copy] PLoS ONE, Vol. 4, No. 4. (1 April 2009), e5103. by Ramakrishnan Anish, Mohammad B. Hossain, Raymond H. Jacobson, Shinako Takada posted to promoter tata-less xcpe2 by rpatward on 2009-04-14 20:11:09 as
	High-resolution DNA-binding specificity analysis of yeast transcription factors [My Copy] Genome Research, Vol. 19, No. 4. (21 April 2009), pp. 556-566. by Cong Zhu, Kelsey J. R. P. Byers, Rachel P. McCord, et al.Zhenwei Shi, Michael F. Berger, Daniel E. Newburger, Katrina Saulrieta, Zachary Smith, Mita V. Shah, Mathangi Radhakrishnan, Anthony A. Philippakis, Yanhui Hu, Federico De Masi, Marcin Pacek, Andreas Rolfs, Tal Murthy, Joshua LaBaer, Martha L. Bulyk posted to promoter regulation synthetic yeast by rpatward on 2009-04-14 20:04:46 as along with 9 people matted austin_mcdonald siebert dolchan xwbcn absterga djkt kristallreiner aalibes
	A conditional transposon-based insertional mutagenesis screen for genes associated with mouse hepatocellular carcinoma [My Copy] Nature Biotechnology, Vol. 27, No. 3. (22 February 2009), pp. 264-274. by Vincent W. Keng, Augusto Villanueva, Derek Y. Chiang, et al.Adam J. Dupuy, Barbara J. Ryan, Ilze Matise, Kevin A. T. Silverstein, Aaron Sarver, Timothy K. Starr, Keiko Akagi, Lino Tessarollo, Lara S. Collier, Scott Powers, Scott W. Lowe, Nancy A. Jenkins, Neal G. Copeland, Josep M. Llovet, David A. Largaespada posted to functional_genomics insertional_mutagenesis by rpatward on 2009-03-20 18:43:30 as along with 2 people StanNat jbhiatt
	Going the Distance: A Current View of Enhancer Action [My Copy] Science, Vol. 281, No. 5373. (3 July 1998), pp. 60-63. by Elizabeth M. Blackwood, James T. Kadonaga posted to enhancer promoter review by rpatward on 2009-03-13 01:17:20 as along with 2 people gderwin xingxu
	Enhancer-dependent transcription of the epsilon-globin promoter requires promoter-bound GATA-1 and enhancer-bound AP-1/NF-E2. [My Copy] Mol. Cell. Biol., Vol. 13, No. 2. (1 February 1993), pp. 911-917. by Q. Gong, A. Dean posted to enhancer promoter by rpatward on 2009-03-13 00:12:50 as
	Characterization and Identification of MicroRNA Core Promoters in Four Model Species [My Copy] PLoS Comput Biol, Vol. 3, No. 3. (9 March 2007), e37. by Xuefeng Zhou, Jianhua Ruan, Guandong Wang, Weixiong Zhang posted to core microrna promoter by rpatward on 2009-03-12 22:22:51 as along with 14 people and 3 groups thegoose2 daforerog natstreet druvus tharris heliopais jfr tardigrade andersbj cdawson ale maralena bootsy xili03 C. elegans / WormBase microRNA GIG
	High-resolution human core-promoter prediction with CoreBoost_HM [My Copy] Genome Research, Vol. 19, No. 2. (7 February 2009), pp. 266-275. by Xiaowo Wang, Zhenyu Xuan, Xiaoyue Zhao, Yanda Li, Michael Q. Zhang posted to microrna promoter by rpatward on 2009-03-12 21:51:55 as along with 6 people and 1 group guhjy megraw tonamswish pengchy abizar maximilianh microRNA
	ABySS: a parallel assembler for short read sequence data. [My Copy] Genome research, Vol. 19, No. 6. (1 June 2009), pp. 1117-1123. by Jared T. Simpson, Kim Wong, Shaun D. Jackman, Jacqueline E. Schein, Steven J. Jones, Inanç Birol posted to short_read_assembly by rpatward on 2009-03-08 21:47:27 as along with 23 people and 2 groups ramonvidal orzenil pachorip GustavoLacerda jonilaserson operon polivares reyez jasontsai n00c humburg dakelley jessopher idonaldson robsyme neils natstreet AaronDarling druvus dswan stajich jbhiatt erikarner BergmanLab Mycology
	Single nucleotide changes in the human Igamma1 and Igamma4 promoters underlie different transcriptional responses to CD40. [My Copy] Journal of immunology (Baltimore, Md. : 1950), Vol. 182, No. 4. (15 February 2009), pp. 2185-2193. by F. L. Sinquett, R. L. Dryer, V. Marcelli, A. Batheja, L. R. Covey posted to promoter snp by rpatward on 2009-03-06 02:08:18 as
	Mammalian RNA polymerase II core promoters: insights from genome-wide studies. [My Copy] Nature reviews. Genetics, Vol. 8, No. 6. (08 June 2007), pp. 424-436. by Albin Sandelin, Piero Carninci, Boris Lenhard, Jasmina Ponjavic, Yoshihide Hayashizaki, David A. Hume posted to core promoter review by rpatward on 2009-03-06 02:03:54 as along with 16 people and 3 groups inesdesantiago isimpson megraw guhjy tonamswish maximilianh siebert Lauren_Jones agustinarce dchughes xiaobeizhao zwang cabbagezs cisevol GeeSharpMinor idonaldson G4ID Genetics-of-Gambling cis-regulatory-evolution
	JNK MAPK pathway regulates constitutive transcription of CCL5 by human NK cells through SP1. [My Copy] Journal of immunology (Baltimore, Md. : 1950), Vol. 182, No. 2. (15 January 2009), pp. 1011-1020. by D. Kumar, J. Hosse, C. von Toerne, E. Noessner, P. J. Nelson posted to mutagenesis promoter sp1 by rpatward on 2009-03-06 02:03:05 as
	The RNA polymerase II core promoter - the gateway to transcription. [My Copy] Current opinion in cell biology In Nucleus and gene expression, Vol. 20, No. 3. (June 2008), pp. 253-259. by T. Juven-Gershon, J. Y. Hsu, J. W. Theisen, J. T. Kadonaga posted to core promoter review transcriptional_regulation by rpatward on 2009-03-06 01:53:43 as along with 4 people megraw guhjy jochenG tresch
	Expression of human snRNA genes from beginning to end. [My Copy] Biochemical Society transactions, Vol. 36, No. Pt 4. (August 2008), pp. 590-594. by S. Egloff, D. O'Reilly, S. Murphy posted to promoter review snrna transcriptional_regulation by rpatward on 2009-03-06 01:51:24 as
	New problems in RNA polymerase II transcription initiation: matching the diversity of core promoters with a variety of promoter recognition factors. [My Copy] The Journal of biological chemistry, Vol. 282, No. 20. (18 May 2007), pp. 14685-14689. by F. Müller, M. A. Demény, L. Tora posted to core promoter review by rpatward on 2009-03-06 01:47:01 as along with 1 person myrtilus
	Prevalence of the initiator over the TATA box in human and yeast genes and identification of DNA motifs enriched in human TATA-less core promoters. [My Copy] Gene, Vol. 389, No. 1. (1 March 2007), pp. 52-65. by C. Yang, E. Bolotin, T. Jiang, F. M. Sladek, E. Martinez posted to core promoter tata tata-less by rpatward on 2009-03-06 01:42:16 as
	Links between core promoter and basic gene features influence gene expression [My Copy] BMC Genomics, Vol. 9 (25 February 2008), 92. by Sandra Moshonov, Rofa Elfakess, Michal Golan-Mashiach, Hadar Sinvani, Rivka Dikstein posted to promoter tata tata-less by rpatward on 2009-03-06 01:39:12 as along with 2 people and 2 groups inesdesantiago cisevol cis-regulatory-evolution BergmanLab
	Analysis of heat shock element recognition by saturation mutagenesis of the human HSP70.1 gene promoter [My Copy] J. Biol. Chem., Vol. 268, No. 11. (15 April 1993), pp. 8317-8324. by N. F. Cunniff, W. D. Morgan posted to hsp mutagenesis promoter by rpatward on 2009-03-06 01:31:26 as
	Experimentally determined weight matrix definitions of the initiator and TBP binding site elements of promoters [My Copy] Nucl. Acids Res., Vol. 24, No. 8. (15 April 1996), pp. 1531-1539. by R. J. Kraus, E. E. Murray, S. R. Wiley, et al.N. M. Zink, K. Loritz, G. W. Gelembiuk, J. E. Mertz posted to mutagenesis promoter sv40 tata_binding_protein by rpatward on 2009-03-06 01:11:15 as
	Intrinsic variability of gene expression encoded in nucleosome positioning sequences : Article : Nature Genetics [My Copy] posted to nucleosome promoter transcriptional_regulation by rpatward on 2009-03-02 00:38:55 as
	Two distinct modes of nucleosome modulation associated with different degrees of dependence of nucleosome positioning on the underlying DNA sequence. [My Copy] BMC genomics, Vol. 10 (2009) by Z. Dai, X. Dai, Q. Xiang, et al.J. Feng, J. Wang, Y. Deng, C. He posted to chromatin nucleosome promoter by rpatward on 2009-03-02 00:35:54 as
	Environment-specific combinatorial cis-regulation in synthetic promoters [My Copy] Mol Syst Biol, Vol. 5 (17 February 2009) by Jason Gertz, Barak A. Cohen posted to cis_regulation promoter synthetic_promoter by rpatward on 2009-03-01 22:31:48 as along with 4 people and 1 group francemirko TRHvidsten maiko roys TranscriptionalRegulationWithThermodynamicModels
	Nucleosome positioning and gene regulation: advances through genomics [My Copy] Nature Reviews Genetics, Vol. 10, No. 3. (01 March 2009), pp. 161-172. by Cizhong Jiang, B. Franklin Pugh posted to review transcriptional_regulation by rpatward on 2009-03-01 22:19:02 as along with 13 people and 1 group tonamswish hagechouchin443 humburg talponer fenghezi inesdesantiago timflutre nilsbecker siebert aalibes idonaldson WanderingAengus provero cube_and_beyond
	A common MYBPC3 (cardiac myosin binding protein C) variant associated with cardiomyopathies in South Asia [My Copy] Nature Genetics, Vol. 41, No. 2. (18 January 2009), pp. 187-191. by Perundurai S. Dhandapany, Sakthivel Sadayappan, Yali Xue, et al.Gareth T. Powell, Deepa S. Rani, Prathiba Nallari, Taranjit S. Rai, Madhu Khullar, Pedro Soares, Ajay Bahl, Jagan M. Tharkan, Pradeep Vaideeswar, Andiappan Rathinavel, Calambur Narasimhan, Dharma R. Ayapati, Qasim Ayub, Qasim S. Mehdi, Stephen Oppenheimer, Martin B. Richards, Alkes L. Price, Nick Patterson, David Reich, Lalji Singh, Chris Tyler-Smith, Kumarasamy Thangaraj posted to associationstudy cardiomyopathy journalclub mybpc3 by rpatward on 2009-03-01 22:04:00 as along with 1 person farhat
	ChIP-seq accurately predicts tissue-specific activity of enhancers [My Copy] Nature, Vol. 457, No. 7231. (12 February 2009), pp. 854-858. by Axel Visel, Matthew J. Blow, Zirong Li, et al.Tao Zhang, Jennifer A. Akiyama, Amy Holt, Ingrid Plajzer-Frick, Malak Shoukry, Crystal Wright, Feng Chen, Veena Afzal, Bing Ren, Edward M. Rubin, Len A. Pennacchio posted to enhancer by rpatward on 2009-03-01 21:01:17 as along with 22 people and 2 groups tonamswish ewilban1 samanthacooper ashkelon13 isimpson gdb dnewburger jochenG bertelsen oelemento cajunsushi WanderingAengus absterga provero cassj anphony dpollard caseybrown biomcgary xingxu idonaldson djkt RockmanLab cis-regulatory-evolution
	Analysis of combinatorial cis-regulation in synthetic and genomic promoters [My Copy] Nature, Vol. 457, No. 7226. (23 November 2008), pp. 215-218. by Jason Gertz, Eric D. Siggia, Barak A. Cohen posted to promoter synthetic by rpatward on 2009-03-01 20:49:21 as along with 17 people and 4 groups Vincent_Rouilly pcarbo emptyhb TRHvidsten jbhiatt lusk maximilianh roys dpollard druvus sebastien_vigneau pengchy sandersl djkt siebert isimpson xianjun TranscriptionalRegulationWithThermodynamicModels RockmanLab cis-regulatory-evolution microbiology_nijmegen
	TATA box polymorphisms in human gene promoters and associated hereditary pathologies [My Copy] Biochemistry (Moscow), Vol. 74, No. 2. (1 February 2009), pp. 117-129. by L. Savinkova, M. Ponomarenko, P. Ponomarenko, et al.I. Drachkova, M. Lysova, T. Arshinova, N. Kolchanov posted to core human pathology promoter tata by rpatward on 2009-02-28 00:22:03 as
	Diversity of core promoter elements comprising human bidirectional promoters. [My Copy] BMC genomics, Vol. 9 Suppl 2, No. Suppl 2. (2008) by M. Q. Yang, L. L. Elnitski posted to bidirectional cpg human promoter by rpatward on 2009-02-28 00:00:13 as along with 1 person guhjy
	Mechanism of initiator-mediated transcription: evidence for a functional interaction between the TATA-binding protein and DNA in the absence of a specific recognition sequence. [My Copy] Molecular and cellular biology, Vol. 13, No. 7. (July 1993), pp. 3841-3849. by B. Zenzie-Gregory, A. Khachi, I. P. Garraway, S. T. Smale posted to core human promoter by rpatward on 2009-02-27 23:44:21 as

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promoter	36
core	12
enhancer	7
general_exam	6
review	6
tata	6
tata-less	6
transcriptional_regulation	5
journalclub	4
human	3
interferon	3
mutagenesis	3
synthetic	3
cpg	2
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nucleosome	2
regulation	2
snp	2
sp1	2
antibiotic_resistance_genes	1
associationstudy	1
betaglobin	1
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cage	1
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classic	1
cmv	1
cool_stuff	1
encode	1
function	1
functional_genomics	1
game	1
haplotyping	1
hela	1
hsp	1
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in_vitro	1
metagenomics	1
multiplexed_sequencing	1
mybpc3	1
pathology	1
sequencing	1
short_read_assembly	1
snrna	1
structure	1
super_promoter	1
sv40	1
synthetic_promoter	1
tata_binding_protein	1
tf_binding	1
tissue-specific	1
xcpe2	1
yeast	1

rpatward's library 54 articles Export

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