rpetrenko's library 61 articles Export

	Amino acid substitution matrices from protein blocks. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 89, No. 22. (15 November 1992), pp. 10915-10919. by S. Henikoff, J. G. Henikoff posted to substitution_matrix blosum alignment by rpetrenko on 2009-11-10 02:28:30 as along with 14 people rshe BioNica maria_hauser cmura alefox j3xucite sebk cen4ik kaarsinogen dgront gurkanbebek Iden-J_GluR cjeans ashwinma
	Vicinal Proton Coupling in Nuclear Magnetic Resonance [My Copy] Journal of the American Chemical Society, Vol. 85, No. 18. (1 September 1963), pp. 2870-2871. by Martin Karplus posted to karplus j-coupling equation by rpetrenko on 2009-11-04 22:08:56 as
	The measurement of resilience with a scanning probe microscope [My Copy] Polymer Testing, Vol. 25, No. 1. (February 2006), pp. 2-11. by M. Huson, J. Maxwell posted to resilience elastomeric afm by rpetrenko on 2009-11-03 06:28:10 as
	NMR Order Parameters of Biomolecules: A New Analytical Representation and Application to the Gaussian Axial Fluctuation Model [My Copy] Journal of the American Chemical Society, Vol. 116, No. 18. (1 September 1994), pp. 8426-8427. by Rafael Brueschweiler, Peter E. Wright posted to s2 parameter order by rpetrenko on 2009-10-30 23:03:12 as
	Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 1. Theory and range of validity [My Copy] Journal of the American Chemical Society, Vol. 104, No. 17. (1 August 1982), pp. 4546-4559. by Giovanni Lipari, Attila Szabo posted to szabo s2 parameter order nmr lipari by rpetrenko on 2009-10-30 22:51:14 as along with 1 person bmduggan
	Hydrophilic elastomeric biomaterials based on resilin-like polypeptides [My Copy] Soft Matter, Vol. 5, No. 18. (2009), pp. 3412-3416. by Manoj B. Charati, Jamie L. Ifkovits, Jason A. Burdick, Jeffery G. Linhardt, Kristi L. Kiick posted to resilin elastomeric by rpetrenko on 2009-10-06 21:33:57 as
	Perspective on Free-Energy Perturbation Calculations for Chemical Equilibria [My Copy] Journal of Chemical Theory and Computation, Vol. 4, No. 6. (1 June 2008), pp. 869-876. by William L. Jorgensen, Laura L. Thomas posted to free_energy fep by rpetrenko on 2009-09-04 21:12:19 as along with 1 person qshao
	Circular Dichroism: Principles and Applications [My Copy] (2000) edited by Nina Berova, Koji Nakanishi, Robert W. Woody posted to cd book by rpetrenko on 2009-08-18 15:13:09 as along with 1 person kjell
	General Framework for Studying the Dynamics of Folded and Nonfolded Proteins by NMR Relaxation Spectroscopy and MD Simulation [My Copy] Journal of the American Chemical Society, Vol. 124, No. 16. (1 April 2002), pp. 4522-4534. by Jeanine J. Prompers, Rafael Bruschweiler posted to parameter order nmr n-h ired by rpetrenko on 2009-08-12 22:11:24 as along with 2 people yxue jlh64
	Random-coil behavior and the dimensions of chemically unfolded proteins [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 34. (24 August 2004), pp. 12491-12496. by Jonathan E. Kohn, Ian S. Millett, Jaby Jacob, et al.Bojan Zagrovic, Thomas M. Dillon, Nikolina Cingel, Robin S. Dothager, Soenke Seifert, P. Thiyagarajan, Tobin R. Sosnick, M. Zahid Hasan, Vijay S. Pande, Ingo Ruczinski, Sebastian Doniach, Kevin W. Plaxco posted to coil gyration radius random by rpetrenko on 2009-08-07 15:10:20 as along with 2 people carlosjavierna yxue
	The RCI server: rapid and accurate calculation of protein flexibility using chemical shifts [My Copy] Nucl. Acids Res., Vol. 35, No. suppl_2. (13 July 2007), pp. W531-537. by Mark V. Berjanskii, David S. Wishart posted to order parameter rci by rpetrenko on 2009-08-05 05:54:02 as along with 1 person apaydin
	A simple method to predict protein flexibility using secondary chemical shifts. [My Copy] Journal of the American Chemical Society, Vol. 127, No. 43. (2 November 2005), pp. 14970-14971. by Mark V. Berjanskii, David S. Wishart posted to order parameter rci by rpetrenko on 2009-08-05 03:33:31 as along with 6 people and 1 group laurabailey viktor21614 dsekaran apaydin yongzhao allmensch TSRI_MGL
	Protein secondary structure prediction based on position-specific scoring matrices. [My Copy] Journal of molecular biology, Vol. 292, No. 2. (17 September 1999), pp. 195-202. by D. T. Jones posted to secondary structure by rpetrenko on 2009-08-05 00:53:21 as along with 11 people kgutwin pjcite chad_davis wouterboomsma j3xucite dgront rabio rph dandaman saunders granujilla
	All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins† [My Copy] The Journal of Physical Chemistry B, Vol. 102, No. 18. (1 April 1998), pp. 3586-3616. by A. D. MacKerell, D. Bashford, Bellott, et al.R. L. Dunbrack, J. D. Evanseck, M. J. Field, S. Fischer, J. Gao, H. Guo, S. Ha, D. Joseph-McCarthy, L. Kuchnir, K. Kuczera, F. T. K. Lau, C. Mattos, S. Michnick, T. Ngo, D. T. Nguyen, B. Prodhom, W. E. Reiher, B. Roux, M. Schlenkrich, J. C. Smith, R. Stote, J. Straub, M. Watanabe, J. Wiorkiewicz-Kuczera, D. Yin, M. Karplus posted to charm dynamics molecular by rpetrenko on 2009-08-05 00:47:29 as along with 12 people jmparks dsmueller jrperillaj Diego_Prada oceanwind dfgreen mkrishna timg dimka ttjoseph papatonyhill ssomani
	The thermodynamic analysis of thermoelastic measurements on high elastic materials [My Copy] Journal of Polymer Science, Vol. 45, No. 145. (1960), pp. 235-236. by P. J. Flory, A. Ciferri, C. A. J. Hoeve posted to elastomeric flory by rpetrenko on 2009-08-05 00:23:31 as along with 1 person norris
	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted to blast by rpetrenko on 2009-08-05 00:21:53 as along with 77 people and 6 groups VGreiff richter80 krapnik azazello rshe mtaschuk sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser parnell yylin esyoun APRegier idoerg Neeperando robert85 thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti ashaytan benwei granujilla C. elegans / WormBase dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
	Comparison of Atomic-Level and Coarse-Grained Models for Liquid Hydrocarbons from Molecular Dynamics Configurational Entropy Estimates [My Copy] The Journal of Physical Chemistry B, Vol. 110, No. 16. (1 April 2006), pp. 8464-8473. by Riccardo Baron, Alex H. de Vries, Philippe H. Hunenberger, Wilfred F. van Gunsteren posted to coarse-grain entropy by rpetrenko on 2009-08-05 00:20:36 as
	Improved prediction of signal peptides: SignalP 3.0. [My Copy] Journal of molecular biology, Vol. 340, No. 4. (16 July 2004), pp. 783-795. by Jannick Dyrløv D. Bendtsen, Henrik Nielsen, Gunnar von Heijne, Søren Brunak posted to signal by rpetrenko on 2009-08-05 00:19:16 as along with 10 people BioNica azazello tfuji katholt nedwards kreibich niallhaslam richter80 sebk raiyar
	On the calculation of entropy from covariance matrices of the atomic fluctuations [My Copy] The Journal of Chemical Physics, Vol. 115, No. 14. (2001), pp. 6289-6292. by Ioan Andricioaei, Martin Karplus posted to entropy by rpetrenko on 2009-08-05 00:18:31 as along with 2 people laurenm Elena_Zubova
	Entropy-energy decomposition from nonequilibrium work trajectories. [My Copy] The Journal of chemical physics, Vol. 128, No. 2. (14 January 2008) by Jeremiah Nummela, Faten Yassin, Ioan Andricioaei posted to jarzynski by rpetrenko on 2009-08-05 00:16:47 as
	Inverse Temperature Transition of a Biomimetic Elastin Model: Reactive Flux Analysis of Folding/Unfolding and Its Coupling to Solvent Dielectric Relaxation† [My Copy] The Journal of Physical Chemistry B, Vol. 110, No. 8. (1 March 2006), pp. 3576-3587. by Marcel Baer, Eduard Schreiner, Axel Kohlmeyer, Roger Rousseau, Dominik Marx posted to elastin by rpetrenko on 2009-08-05 00:15:40 as along with 1 person mschofie
	Temperature-Dependent Conformational Transitions and Hydrogen-Bond Dynamics of the Elastin-Like Octapeptide GVG(VPGVG): A Molecular-Dynamics Study [My Copy] Vol. 86, No. 3. (1 March 2004), pp. 1393-1407. by Roger Rousseau, Eduard Schreiner, Axel Kohlmeyer, Dominik Marx posted to elastin by rpetrenko on 2009-08-05 00:14:46 as
	Elastomeric proteins: biological roles, structures and mechanisms [My Copy] Trends in Biochemical Sciences, Vol. 25, No. 11. (1 November 2000), pp. 567-571. by A. Tatham posted to elastomeric by rpetrenko on 2009-08-05 00:13:45 as along with 1 person grahamc
	Die Berechnung optischer und elektrostatischer Gitterpotentiale [My Copy] Annalen der Physik, Vol. 369, No. 3. (1921), pp. 253-287. by P. P. Ewald posted to ewald by rpetrenko on 2009-08-05 00:12:25 as along with 2 people softsimu OndrejMarsalek
	Particle mesh Ewald: An N [center-dot] log(N) method for Ewald sums in large systems [My Copy] The Journal of Chemical Physics, Vol. 98, No. 12. (1993), pp. 10089-10092. by Tom Darden, Darrin York, Lee Pedersen posted to pme by rpetrenko on 2009-08-05 00:11:02 as along with 11 people bmduggan r2s2 robertvacha A_Coletta_Thesis mleis and_ped10 allmensch easybakemuffin RamuAnandakrishnan tji ashaytan
	A smooth particle mesh Ewald method [My Copy] The Journal of Chemical Physics, Vol. 103, No. 19. (1995), pp. 8577-8593. by Ulrich Essmann, Lalith Perera, Max L. Berkowitz, Tom Darden, Hsing Lee, Lee G. Pedersen posted to ewald pme by rpetrenko on 2009-08-05 00:08:38 as along with 15 people and 2 groups jmparks A_Coletta_Thesis r2s2 charris5 pavanghatty sobolevnrm choonpeng lillekatt and_ped10 easybakemuffin RamuAnandakrishnan ashaytan mikaellund 6rheology jteyra Structural Biology Group TorVergata baker-group
	Constant temperature simulations using the Langevin equation with velocity Verlet integration [My Copy] Chemical Physics, Vol. 236, No. 1-3. (15 September 1998), pp. 243-252. by Germana M. Paterlini, David M. Ferguson posted to damping langevin by rpetrenko on 2009-08-05 00:07:02 as along with 1 person jwagoner
	FlyBase: enhancing Drosophila Gene Ontology annotations [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D555-559. by Susan Tweedie, Michael Ashburner, Kathleen Falls, et al.Paul Leyland, Peter Mcquilton, Steven Marygold, Gillian Millburn, David Osumi-Sutherland, Andrew Schroeder, Ruth Seal, Haiyan Zhang, The FlyBase Consortium posted to drosophila flybase by rpetrenko on 2009-08-04 23:59:24 as
	Evolution of genes and genomes on the Drosophila phylogeny [My Copy] Nature, Vol. 450, No. 7167. (08 November 2007), pp. 203-218. posted to drosophila by rpetrenko on 2009-08-04 23:58:04 as along with 37 people and 5 groups aaltenburger biomcgary nuttpo daveGerrard Anachff GustavoLacerda mqbphcw3 gwallau chica jlncdr aprasad gjuggler lizbiogen jbsaltz druvus pradiptaray pengchy operon tmmurali indigoviolet djkt timflutre stajich zwang Garamonfok lp2 CharlesM hpaces caseybrown emptyhb urgi noor PetrovLab isimpson balicea cisevol hdopazo Bioinformatics EisenLab Mycology BergmanLab Drosophila-Genetics-Genomics-2008
	Combining prediction of secondary structure and solvent accessibility in proteins. [My Copy] Proteins, Vol. 59, No. 3. (15 May 2005), pp. 467-475. by Rafał Adamczak, Aleksey Porollo, Jarosław Meller posted to jareklab sable by rpetrenko on 2009-08-04 23:57:03 as
	A conserved domain in arthropod cuticular proteins binds chitin [My Copy] Insect Biochemistry and Molecular Biology, Vol. 31, No. 11. (October 2001), pp. 1083-1093. by J. Rebers posted to resilin by rpetrenko on 2009-08-04 23:55:40 as
	Amino acid composition of a new rubber-like protein, reslin. [My Copy] Biochimica et biophysica acta, Vol. 48 (15 April 1961), pp. 452-459. by K. Bailey, T. Weis-Fogh posted to resilin weis-fogh by rpetrenko on 2009-08-04 23:53:07 as
	Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes [My Copy] Journal of Computational Physics, Vol. 23, No. 3. (March 1977), pp. 327-341. by J. Ryckaert, G. Ciccotti, H. Berendsen posted to shake by rpetrenko on 2009-08-04 23:50:25 as along with 8 people Vadikus dimka choonpeng gcottone stephenbond bmduggan A_Coletta_Thesis ashaytan
	Constant pressure molecular dynamics simulation: The Langevin piston method [My Copy] The Journal of Chemical Physics, Vol. 103, No. 11. (1995), pp. 4613-4621. by Scott E. Feller, Yuhong Zhang, Richard W. Pastor, Bernard R. Brooks posted to constant hoover md nose pressure by rpetrenko on 2009-08-04 23:49:33 as along with 2 people dimka easybakemuffin
	Constant pressure molecular dynamics algorithms [My Copy] The Journal of Chemical Physics, Vol. 101, No. 5. (1994), pp. 4177-4189. by Glenn J. Martyna, Douglas J. Tobias, Michael L. Klein posted to hoover nose by rpetrenko on 2009-08-04 23:47:47 as along with 2 people dimka easybakemuffin
	NAMD2: Greater Scalability for Parallel Molecular Dynamics [My Copy] Journal of Computational Physics, Vol. 151, No. 1. (May 1999), pp. 283-312. by Laxmikant Kalé, Robert Skeel, Milind Bhandarkar, et al.Robert Brunner, Attila Gursoy, Neal Krawetz, James Phillips, Aritomo Shinozaki, Krishnan Varadarajan posted to namd2 by rpetrenko on 2009-08-04 23:45:16 as along with 2 people stephenbond cen4ik
	Knowledge-based protein secondary structure assignment [My Copy] Proteins: Structure, Function, and Genetics, Vol. 23, No. 4. (December 1995), pp. 566-579. by Dmitrij Frishman, Patrick Argos posted to secondary stride structure by rpetrenko on 2009-08-04 23:43:38 as along with 4 people ashaytan3 marti choonpeng saravan
	Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features [My Copy] Biopolymers, Vol. 22, No. 12. (December 1983), pp. 2577-2637. by Wolfgang Kabsch, Christian Sander posted to dssp secondary structure by rpetrenko on 2009-08-04 23:42:27 as along with 32 people barmak7282 Vadikus j3xucite scampos TLVincent maria_hauser pablocarb carlosjavierna mijam wqia007 dsmueller niallhaslam saunders jwm sebk Diego_Prada pjcite kaarsinogen lna chad_davis wouterboomsma penka ffranca dgront choonpeng rabio gisle medic0747 martainn chgjb mschofie marti
	Assigning secondary structure from protein coordinate data [My Copy] Proteins: Structure, Function, and Genetics, Vol. 35, No. 3. (1999), pp. 313-320. by Sonya M. King, W. Curtis Johnson posted to johnson ppii secondary structure by rpetrenko on 2009-08-04 23:41:20 as
	Synthesis and properties of crosslinked recombinant pro-resilin [My Copy] Nature, Vol. 437, No. 7051. (13 October 2005), pp. 999-1002. by Christopher M. Elvin, Andrew G. Carr, Mickey G. Huson, et al.Jane M. Maxwell, Roger D. Pearson, Tony Vuocolo, Nancy E. Liyou, Darren C. C. Wong, David J. Merritt, Nicholas E. Dixon posted to resilin by rpetrenko on 2009-08-04 23:39:14 as
	Tentative identification of a resilin gene in Drosophila melanogaster [My Copy] Insect Biochemistry and Molecular Biology, Vol. 31, No. 10. (September 2001), pp. 965-970. by D. Ardell posted to resilin by rpetrenko on 2009-08-04 23:38:25 as
	THE CROSS-LINKS IN RESILIN IDENTIFIED AS DITYROSINE AND TRITYROSINE. [My Copy] Biochimica et biophysica acta, Vol. 93 (9 October 1964), pp. 213-215. by S. O. Andersen posted to no-tag by rpetrenko on 2009-08-04 23:36:06 as
	Elastomeric Proteins: Structures, Biomechanical Properties, and Biological Roles [My Copy] (15 March 2004) posted to elastomeric resilin by rpetrenko on 2009-08-04 23:33:26 as
	Molecular Orientation and Two-Component Nature of the Crystalline Fraction of Spider Dragline Silk [My Copy] Science, Vol. 271, No. 5245. (5 January 1996), pp. 84-87. by Alexandra H. Simmons, Carl A. Michal, Lynn W. Jelinski posted to dragline silk by rpetrenko on 2009-08-04 23:22:51 as
	Comparison of Repetitive Sequences Derived from High Molecular Weight Subunits of Wheat Glutenin, an Elastomeric Plant Protein [My Copy] Biomacromolecules, Vol. 7, No. 4. (1 April 2006), pp. 1096-1103. by Nikolaus Wellner, Justin T. Marsh, Andrew W. J. Savage, et al.Nigel G. Halford, Peter R. Shewry, E. N. Clare Mills, Peter S. Belton posted to glutenin by rpetrenko on 2009-08-04 23:20:59 as
	DURATION AND FREQUENCY OF WING BEAT IN THE AGING HOUSE FLY, MUSCA DOMESTICA L [My Copy] Biol Bull, Vol. 131, No. 3. (1 December 1966), pp. 479-486. by Morris Rockstein, Prem L. A. T. A. Bhatnagar posted to resilin by rpetrenko on 2009-08-04 23:20:09 as
	Relationship between body mass and biomechanical properties of limb tendons in adult mammals [My Copy] Am J Physiol Regul Integr Comp Physiol, Vol. 266, No. 3. (1 March 1994), pp. R1016-1021. by C. M. Pollock, R. E. Shadwick posted to resilin by rpetrenko on 2009-08-04 23:19:14 as
	A Synthetic Resilin Is Largely Unstructured [My Copy] Vol. 95, No. 7. (1 October 2008), pp. 3358-3365. by Kate M. Nairn, Russell E. Lyons, Roger J. Mulder, et al.Stephen T. Mudie, David J. Cookson, Emmanuelle Lesieur, Misook Kim, Deborah Lau, Fiona H. Scholes, Christopher M. Elvin posted to an16 resilin by rpetrenko on 2009-08-04 23:11:48 as
	Design and facile production of recombinant resilin-like polypeptides: gene construction and a rapid protein purification method [My Copy] Protein Engineering, Design and Selection, Vol. 20, No. 1. (12 January 2007), pp. gzl050-32. by Russell E. Lyons, Emmanuelle Lesieur, Misook Kim, et al.Darren C. C. Wong, Mickey G. Huson, Kate M. Nairn, Alan G. Brownlee, Roger D. Pearson, Christopher M. Elvin posted to an16 resilin by rpetrenko on 2009-08-04 23:10:13 as
	POLYVIEW: a flexible visualization tool for structural and functional annotations of proteins [My Copy] Bioinformatics, Vol. 20, No. 15. (12 October 2004), pp. 2460-2462. by Aleksey A. Porollo, Rafal Adamczak, Jaroslaw Meller posted to jareklab polyview by rpetrenko on 2009-08-04 23:08:35 as

Note: You may cite this page as: http://www.citeulike.org/user/rpetrenko

Result page: 1 2 Next

resilin	12
order	6
parameter	6
elastomeric	5
entropy	4
secondary	4
structure	4
nmr	3
s2	3
an16	2
charm27-na	2
drosophila	2
dynamics	2
elastin	2
ewald	2
hoover	2
jareklab	2
jarzynski	2
molecular	2
namd2	2
n-h	2
nose	2
pme	2
rci	2
weis-fogh	2
afm	1
alignment	1
approximation	1
blast	1
blosum	1
book	1
cd	1
charm	1
charmm	1
coarse-grain	1
coil	1
constant	1
damping	1
dragline	1
dragonfly	1
dssp	1
elastic	1
equation	1
fep	1
flea	1
flory	1
fluctuation	1
flybase	1
free_energy	1
glutenin	1
gyration	1
harmonic	1
ired	1
j-coupling	1
johnson	1
karplus	1
langevin	1
lipari	1
md	1
nonequilibrium	1
oscillator	1
polyview	1
ppii	1
pressure	1
radius	1
random	1
resilience	1
sable	1
schulten	1
shake	1
signal	1
silk	1
stride	1
substitution_matrix	1
szabo	1
tendon	1
theorem	1
weblogo	1
work	1

rpetrenko's library 61 articles Export

rpetrenko's tags