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rph's library [419 articles]

Recent papers added to rph's library.
  • A novel NMR method for determining the interfaces of large protein-protein complexes
    Nat Struct Mol Biol, Vol. 7, No. 3. (March 2000), pp. 220-223.
    by Hideo Takahashi, Tamiji Nakanishi, Keiichiro Kami, Yoji Arata, Ichio Shimada
    posted to nmr-methods cross-saturation by rph on 2008-07-22 01:12:44 as read
  • Orientation of the Escherichia coli Outer Membrane Protein OmpX in Phospholipid Bilayer Membranes Determined by Solid-State NMR
    Biochemistry (31 May 2008)
    by Radhakrishnan Mahalakshmi, Francesca M Marassi
    posted to ss-nmr imp by rph on 2008-07-07 18:32:09 as ** along with 1 person viktor21614
  • NMR Studies of Aggregation and Hydration of Surfactants Containing Amide Bonds
    J. Phys. Chem. B, Vol. 111, No. 8. (1 March 2007), pp. 2008-2014.
    by M Stjerndahl, D Lundberg, H Zhang, FM Menger
    posted to nmr diffusion detergents by rph on 2008-07-07 18:28:23 as *****
  • Stochastic Liouville Equations
    Journal of Mathematical Physics, Vol. 4, No. 2. (1963), pp. 174-183.
    by Ryogo Kubo
    posted to theory spin-dynamics classic by rph on 2008-07-07 18:24:15 as **
  • Average Liouvillian theory in nuclear magnetic resonance - Principles, properties, and applications
    Concepts in Magnetic Resonance, Vol. 12, No. 3. (2000), pp. 152-172.
    by Ranajeet Ghose
    posted to spin-dynamics review nmr-methods alt by rph on 2008-07-03 00:19:46 as **
  • QSim, a program for NMR simulations
    Journal of Biomolecular NMR, Vol. 30, No. 1. (2004), pp. 71-80.
    by Magnus Helgstrand, Peter Allard
    posted to spin-dynamics by rph on 2008-07-03 00:09:38 as ** along with 1 person viktor21614
  • Structural characterization of folding intermediates in cytochrome c by H-exchange labelling and proton NMR
    Nature, Vol. 335, No. 6192. (20 October 1988), pp. 700-704.
    by Heinrich Roder, Gulnur A Elove, Walter S Englander
    posted to nmr exchange by rph on 2008-06-26 17:26:58 as **
  • Statistical mechanics of simple models of protein folding and design.
    Biophysical journal, Vol. 73, No. 6. (December 1997), pp. 3192-3210.
    by VS Pande, AY Grosberg, T Tanaka
    posted to theory folding by rph on 2008-06-26 17:24:45 as ** along with 1 person viktor21614
  • Application of NMR in Structural Proteomics: Screening for Proteins Amenable to Structural Analysis
    Structure, Vol. 10, No. 12. (December 2002), pp. 1613-1618.
    by Till Rehm, Robert Huber, Tad A Holak
    posted to screening review proteomics by rph on 2008-06-26 17:16:59 as ** along with 1 person EvaKaltenborn
  • NMR and X-ray Crystallography, Complementary Tools in Structural Proteomics of Small Proteins
    J. Am. Chem. Soc., Vol. 127, No. 47. (30 November 2005), pp. 16512-16517.
    by AA Yee, A Savchenko, A Ignachenko, J Lukin, X Xu, T Skarina, E Evdokimova, CS Liu, A Semesi, V Guido, AM Edwards, CH Arrowsmith
    posted to review proteomics nmr by rph on 2008-06-26 17:13:42 as ** along with 1 person viktor21614
  • An 15N NMR Spin Relaxation Dispersion Study of the Folding of a Pair of Engineered Mutants of Apocytochrome b562
    J. Am. Chem. Soc., Vol. 127, No. 14. (13 April 2005), pp. 5066-5072.
    by WY Choy, Z Zhou, Y Bai, LE Kay
    posted to relaxation dynamics by rph on 2008-06-26 17:12:07 as **
  • Premicellar Aggregation of Amphiphilic Molecules
    J. Phys. Chem. B, Vol. 111, No. 30. (2 August 2007), pp. 8854-8859.
    by R Hadgiivanova, H Diamant
    posted to micelles detergents by rph on 2008-06-25 23:12:58 as **
  • Organization of Amphiphiles, Part 1: Evidence in Favor of Pre-micellar Aggregates through Fluorescence Spectroscopy
    Bulletin of the Chemical Society of Japan, Vol. 75, No. 4. (2002), pp. 859-865.
    by Lingaraj Sahoo, Jitendra Sarangi, Pramila K Misra
    posted to micelles detergents by rph on 2008-06-25 22:19:56 as **
  • 13C isotopic enrichment for nuclear magnetic resonance studies of carbohydrates and glycoconjugates
    Search tips (Opens new window) Journal/book title Volume Issue Page Clear all fields Advanced Search Methods in Enzymology, Vol. 338 (2002), pp. 305-319.
    by David Live, Louis, Jurgen Schmidt
    posted to review carbohydrate-nmr by rph on 2008-06-25 21:37:10 as **
  • NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY OF HIGH-MOLECULAR-WEIGHT PROTEINS
    Annual Review of Biochemistry, Vol. 73, No. 1. (2004), pp. 107-146.
    by Vitali Tugarinov, Peter M Hwang, Lewis E Kay
    posted to trosy review biggies by rph on 2008-06-25 21:29:58 as **
  • Protein NMR spectroscopy in structural genomics.
    Nature structural biology, Vol. 7 Suppl (November 2000), pp. 982-985.
    by GT Montelione, D Zheng, YJ Huang, KC Gunsalus, T Szyperski
    posted to screening proteomics by rph on 2008-06-25 18:30:21 as read
  • A novel NMR method for screening soluble compound libraries
    Chemical Communications (2001), pp. 239-240.
    by Philip Hodge, Pathavuth Monvisade, Gareth A Morris, Ian Preece
    posted to screening dosy by rph on 2008-06-24 21:40:58 as **
  • Measuring Protein Concentrations by NMR Spectroscopy
    J. Am. Chem. Soc., Vol. 128, No. 8. (1 March 2006), pp. 2571-2576.
    by G Wider, L Dreier
    posted to proteomics nmr-methods by rph on 2008-06-24 21:32:29 as **** along with 1 person viktor21614
  • NMR Studies of Structure and Function of Biological Macromolecules (Nobel Lecture)13
    Angewandte Chemie International Edition, Vol. 42, No. 29. (2003), pp. 3340-3363.
    by Kurt Wüthrich
    posted to review nmr by rph on 2008-06-24 21:28:56 as **
  • Selective spin diffusion. A novel method for studying motional properties of biopolymers in solution
    FEBS Letters, Vol. 96, No. 2. (15 December 1978), pp. 287-290.
    by K Akasaka, M Konrad, RS Goody
    posted to noesy bulk-magnetization by rph on 2008-06-24 21:24:50 as **
  • Rotating-frame nuclear Overhauser effect
    Methods in Enzymology, Vol. 176 (1989), pp. 199-216.
    by LR Brown, Farmer
    posted to roesy review by rph on 2008-06-24 21:21:31 as **
  • The solution structures of Escherichia coli trp repressor and trp aporepressor at an intermediate resolution
    European Journal of Biochemistry, Vol. 202, No. 1. (1991), pp. 53-66.
    by Cheryl Arrowsmith, Ruth Pachter, Russ Altman, Oleg Jardetzky
    posted to structure-determination by rph on 2008-06-23 21:22:49 as **
  • Solution NMR structure of the SOS response protein YnzC from Bacillus subtilis.
    Proteins, Vol. 72, No. 1. (July 2008), pp. 526-530.
    by JM Aramini, S Sharma, YJ Huang, GV Swapna, CK Ho, K Shetty, K Cunningham, LC Ma, L Zhao, LA Owens, M Jiang, R Xiao, J Liu, MC Baran, TB Acton, B Rost, GT Montelione
    posted to structure proteomics by rph on 2008-06-23 21:19:43 as *****
  • Modern spectrum analysis in nuclear magnetic resonance: Alternatives to the fourier transform
    Methods in Enzymology, Vol. 176 (1989), pp. 216-241.
    by Jeffrey C Hoch
    posted to review nmr-processing maximum-entropy by rph on 2008-06-23 21:16:24 as **
  • Maximum entropy reconstruction, spectrum analysis and deconvolution in multidimensional nuclear magnetic resonance
    Methods in Enzymology, Vol. 338 (2002), pp. 159-178.
    by Jeffrey C Hoch, Alan S Stern
    posted to review nmr-processing maximum-entropy by rph on 2008-06-23 21:10:34 as **
  • Cross relaxation and spin diffusion effects on the proton NMR of biopolymers in H2O : Solvent saturation and chemical exchange in superoxide dismutase
    FEBS Letters, Vol. 91, No. 2. (15 July 1978), pp. 320-324.
    by James D Stoesz, Alfred G Redfield, Douglas Malinowski
    posted to relaxation noesy bulk-magnetization by rph on 2008-06-23 21:06:27 as ** along with 1 person viktor21614
  • NOEMOL: integrated molecular graphics and the simulation of Nuclear Overhauser effects in NMR spectroscopy.
    Journal of molecular graphics, Vol. 7, No. 4. (December 1989)
    by M Forster, C Jones, B Mulloy
    posted to noesy computation by rph on 2008-06-23 21:01:42 as **
  • Comparison of compuational methods for simulating nuclear Overhauser effects in NMR spectroscopy
    Journal of Computational Chemistry, Vol. 12, No. 3. (1991), pp. 292-300.
    by Mark J Forster
    posted to noesy computation by rph on 2008-06-23 20:54:54 as read
  • A NOESY-HSQC simulation program, SPIRIT
    Journal of Biomolecular NMR, Vol. 11, No. 1. (1 January 1998), pp. 17-29.
    by Leiming Zhu, Jane H Dyson, Peter E Wright
    posted to noesy computation by rph on 2008-06-23 18:55:48 as **
  • Evaluating protein structure-prediction schemes using energy landscape theory
    IBM Journal of Research and Development, Vol. 45, No. 3/4. (2001), pp. 475-498.
    by MP Eastwood, C Hardin, Z Luthey-Schulten, PG Wolynes
    posted to theory folding by rph on 2008-06-23 18:53:05 as **
  • Rapid amide proton exchange rates in peptides and proteins measured by solvent quenching and two-dimensional NMR
    Protein Sci, Vol. 4, No. 4. (1 April 1995), pp. 804-814.
    by YZ Zhang, Y Paterson, H Roder
    posted to exchange by rph on 2008-06-23 18:44:44 as **
  • Changes in Calmodulin Main-Chain Dynamics upon Ligand Binding Revealed by Cross-Correlated NMR Relaxation Measurements
    J. Am. Chem. Soc., Vol. 127, No. 3. (26 January 2005), pp. 828-829.
    by T Wang, KK Frederick, TI Igumenova, AJ Wand, ERP Zuiderweg
    posted to relaxation dynamics 13c by rph on 2008-06-23 18:42:35 as read
  • Semi-classical nuclear spin relaxation theory revisited for use with biological macromolecules
    Progress in Nuclear Magnetic Resonance Spectroscopy, Vol. 40, No. 3. (29 April 2002), pp. 199-247.
    by Peter Luginbühl, Kurt Wüthrich
    posted to theory review relaxation dynamics by rph on 2008-06-23 18:38:25 as read
  • Model-Free Approach beyond the Borders of Its Applicability
    Journal of Magnetic Resonance, Vol. 127, No. 2. (August 1997), pp. 184-191.
    by Dmitry M Korzhnev, Vladislav Y Orekhov, Alexander S Arseniev
    posted to theory relaxation model-free by rph on 2008-06-23 18:34:41 as *
  • Guidelines for the design of kinetic NOE experiments from computer simulation
    Magnetic Resonance in Chemistry, Vol. 25, No. 4. (1987), pp. 356-361.
    by MP Williamson
    posted to noesy computation by rph on 2008-06-23 16:52:24 as read
  • The Kinetic Pathway of Folding of Barnase
    Journal of Molecular Biology, Vol. 333, No. 1. (10 October 2003), pp. 169-186.
    by Faaizah Khan, Jessica I Chuang, Stefano Gianni, Alan R Fersht
    posted to kinetics folding by rph on 2008-06-19 18:15:52 as **
  • NMR characterization of the dynamics of biomacromolecules.
    Chemical reviews, Vol. 104, No. 8. (August 2004), pp. 3623-3640.
    by AG Palmer
    posted to review relaxation dynamics by rph on 2008-06-19 18:13:14 as **
  • The complete folding pathway of a protein from nanoseconds to microseconds
    Nature, Vol. 421, No. 6925. (20 February 2003), pp. 863-867.
    by Ugo Mayor, Nicholas R Guydosh, Christopher M Johnson, Gunter J Grossmann, Satoshi Sato, Gouri S Jas, Stefan M Freund, Darwin O Alonso, Valerie Daggett, Alan R Fersht
    posted to folding exchange by rph on 2008-06-19 18:10:38 as ** along with 1 person dgront
  • Folding Rates and Low-entropy-loss Routes of Two-state Proteins
    Journal of Molecular Biology, Vol. 329, No. 3. (6 June 2003), pp. 585-598.
    by Thomas R Weikl, Ken A Dill
    posted to theory folding by rph on 2008-06-19 18:08:19 as **
  • Quantitative NMR spectroscopy of supramolecular complexes: Dynamic side pores in ClpP are important for product release
    Proceedings of the National Academy of Sciences, Vol. 102, No. 46. (15 November 2005), pp. 16678-16683.
    by Remco Sprangers, Anna Gribun, Peter M Hwang, Walid A Houry, Lewis E Kay
    posted to relaxation dynamics biggies by rph on 2008-06-19 17:59:17 as **
  • CHAPERONIN-MEDIATED PROTEIN FOLDING
    Annual Review of Biophysics and Biomolecular Structure, Vol. 30, No. 1. (2001), pp. 245-269.
    by D Thirumalai, George H Lorimer
    posted to review folding chaperonin by rph on 2008-06-18 23:01:24 as **
  • Protein NMR relaxation: theory, applications and outlook
    Progress in Nuclear Magnetic Resonance Spectroscopy, Vol. 33, No. 3-4. (2 November 1998), pp. 207-272.
    by Mark W Fischer, Ananya Majumdar, Erik R Zuiderweg
    posted to review relaxation by rph on 2008-06-18 18:21:26 as read
  • TROSY-Based z-Exchange Spectroscopy: Application to the Determination of the Activation Energy for Intermolecular Protein Translocation between Specific Sites on Different DNA Molecules
    J. Am. Chem. Soc., Vol. 129, No. 43. (31 October 2007), pp. 13232-13237.
    by D Sahu, GM Clore, J Iwahara
    posted to trosy nmr-methods exchange by rph on 2008-06-18 18:17:27 as **
  • qTROSY - a novel scheme for recovery of the anti-TROSY magnetisation
    Journal of Biomolecular NMR, Vol. 32, No. 2. (June 2005), pp. 113-127.
    by Tammo Diercks, Vladislav Orekhov
    posted to trosy nmr-methods by rph on 2008-06-18 18:15:22 as **
  • Polychromatic Selective Population Inversion for TROSY Experiments with Large Proteins
    J. Am. Chem. Soc., Vol. 127, No. 1. (12 January 2005), pp. 405-411.
    by K Bromek, D Lee, R Hauhart, M Krych-Goldberg, JP Atkinson, PN Barlow, K Pervushin
    posted to trosy relaxation pulse-design nmr-methods biggies by rph on 2008-06-18 18:10:29 as **
  • NMR techniques used with very large biological macromolecules in solution.
    Methods in enzymology, Vol. 394 (2005), pp. 382-398.
    by G Wider
    posted to trosy review biggies by rph on 2008-06-18 18:08:58 as **
  • Cooling overall spin temperature: Protein NMR experiments optimized for longitudinal relaxation effects
    Journal of Magnetic Resonance, Vol. 178, No. 2. (February 2006), pp. 206-211.
    by Michaël Deschamps, Iain D Campbell
    posted to relaxation nmr-methods biggies by rph on 2008-06-18 18:05:41 as **
  • Protein Folding Studied Using Hydrogen-Exchange Labeling and Two-Dimensional NMR
    Annual Review of Biophysics and Biomolecular Structure, Vol. 21, No. 1. (1992), pp. 243-265.
    by SW Englander, L Mayne
    posted to review exchange by rph on 2008-06-18 18:02:08 as **
  • Role for NMR in structural genomics
    Journal of Structural and Functional Genomics, Vol. 2, No. 3. (2002), pp. 155-169.
    by Michael A Kennedy, Gaetano T Montelione, Cheryl H Arrowsmith, John L Markley
    posted to review proteomics nmr by rph on 2008-06-17 21:32:54 as **
  • Ab initio simulations of protein-folding pathways by molecular dynamics with the united-residue model of polypeptide chains
    PNAS, Vol. 102, No. 7. (15 February 2005), pp. 2362-2367.
    by Adam Liwo, Mey Khalili, Harold A Scheraga
    posted to molecular-dynamics folding computation by rph on 2008-06-17 21:30:46 as ** along with 1 person dgront
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