rsaito's library 31 articles Export

	Human DNA methylomes at base resolution show widespread epigenomic differences [My Copy] Nature, Vol. 462, No. 7271. (14 October 2009), pp. 315-322. by Ryan Lister, Mattia Pelizzola, Robert H. Dowen, et al.R. David Hawkins, Gary Hon, Julian Tonti-Filippini, Joseph R. Nery, Leonard Lee, Zhen Ye, Que-Minh Ngo, Lee Edsall, Jessica Antosiewicz-Bourget, Ron Stewart, Victor Ruotti, A. Harvey Millar, James A. Thomson, Bing Ren, Joseph R. Ecker posted to methylation high-throuput_sequencing by rsaito on 2009-11-11 07:14:07 as along with 23 people and 4 groups guhjy jessopher malay gdb qayub greg neils megraw mamitamura tonamswish clearbluespring rschulz RyuOgawa hagechouchin443 devinmhellesen daveGerrard polivares dswan fenghezi colinveal frohike liqbbi ethanmj JLab CTCF BergmanLab Journal picks
	A Chromatin Landmark and Transcription Initiation at Most Promoters in Human Cells [My Copy] Cell, Vol. 130, No. 1. (13 July 2007), pp. 77-88. by M. Guenther, S. Levine, L. Boyer, R. Jaenisch, R. Young posted to transcription by rsaito on 2009-11-11 06:41:47 as along with 6 people hkuhn RyuOgawa clearbluespring gderwin margaritis inesdesantiago
	Transcribing the genome. [My Copy] Nature, Vol. 461, No. 7261. (10 September 2009), pp. 185-185. by Alex Eccleston, Magdalena Skipper posted to transcription review nucleosome by rsaito on 2009-11-11 06:38:41 as along with 1 person rdiaz
	The transcription unit architecture of the Escherichia coli genome [My Copy] Nature Biotechnology, Vol. 27, No. 11. (01 November 2009), pp. 1043-1049. by Byung-Kwan Cho, Karsten Zengler, Yu Qiu, et al.Young S. Park, Eric M. Knight, Christian L. Barrett, Yuan Gao, Bernhard O. Palsson posted to translation transcription escherichia_coli by rsaito on 2009-11-08 11:24:34 as along with 5 people karthikraman venancio JeremyZucker dbikard jjray
	Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals [My Copy] Nature, Vol. 458, No. 7235. (01 February 2009), pp. 223-227. by Mitchell Guttman, Ido Amit, Manuel Garber, et al.Courtney French, Michael F. Lin, David Feldser, Maite Huarte, Or Zuk, Bryce W. Carey, John P. Cassady, Moran N. Cabili, Rudolf Jaenisch, Tarjei S. Mikkelsen, Tyler Jacks, Nir Hacohen, Bradley E. Bernstein, Manolis Kellis, Aviv Regev, John L. Rinn, Eric S. Lander posted to rna nucleosome by rsaito on 2009-11-02 09:05:07 as along with 29 people and 2 groups hzoltan jwfoley greg mkiyer gdb YukaH galka8_diploma antonkratz bertelsen natstreet fenghezi TRHvidsten megraw tonamswish biomcgary inesdesantiago djkt samgj dchughes admash neils absterga cisevol jm12 WanderingAengus daforerog bpcusack ericsuh mhamada Chinnaiyan Lab JLab
	Genome-wide analysis of mammalian promoter architecture and evolution. [My Copy] Nature genetics, Vol. 38, No. 6. (28 June 2006), pp. 626-635. by Piero Carninci, Albin Sandelin, Boris Lenhard, et al.Shintaro Katayama, Kazuro Shimokawa, Jasmina Ponjavic, Colin A. Semple, Martin S. Taylor, Pär G. Engström, Martin C. Frith, Alistair R. Forrest, Wynand B. Alkema, Sin Lam L. Tan, Charles Plessy, Rimantas Kodzius, Timothy Ravasi, Takeya Kasukawa, Shiro Fukuda, Mutsumi Kanamori-Katayama, Yayoi Kitazume, Hideya Kawaji, Chikatoshi Kai, Mari Nakamura, Hideaki Konno, Kenji Nakano, Salim Mottagui-Tabar, Peter Arner, Alessandra Chesi, Stefano Gustincich, Francesca Persichetti, Harukazu Suzuki, Sean M. Grimmond, Christine A. Wells, Valerio Orlando, Claes Wahlestedt, Edison T. Liu, Matthias Harbers, Jun Kawai, Vladimir B. Bajic, David A. Hume, Yoshihide Hayashizaki posted to promoter fantom by rsaito on 2009-10-19 04:21:17 as along with 19 people and 4 groups guhjy antonkratz athma inesdesantiago rpatward hagechouchin443 nklee djkt jfr xwbcn dchughes tabu samal nickluscombe xiaobeizhao cisevol eviledv gjuggler jasonflannick G4ID EBI-regulation Genetics-of-Gambling cis-regulatory-evolution
	A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling. [My Copy] Cell, Vol. 138, No. 1. (10 July 2009), pp. 114-128. by Vladimir R. Ramirez-Carrozzi, Daniel Braas, Dev M. Bhatt, et al.Christine S. Cheng, Christine Hong, Kevin R. Doty, Joshua C. Black, Alexander Hoffmann, Michael Carey, Stephen T. Smale posted to nucleosome methylation by rsaito on 2009-10-19 04:01:23 as along with 3 people ashkelon13 hagechouchin443 rachelniec
	High-resolution profiling of histone methylations in the human genome. [My Copy] Cell, Vol. 129, No. 4. (18 May 2007), pp. 823-837. by Artem Barski, Suresh Cuddapah, Kairong Cui, et al.Tae-Young Y. Roh, Dustin E. Schones, Zhibin Wang, Gang Wei, Iouri Chepelev, Keji Zhao posted to nucleosome methylation by rsaito on 2009-10-16 09:16:00 as along with 22 people and 2 groups darian tonamswish stubrown fpattyn hagechouchin443 absterga ewilban1 suizifish jochenG caseybrown raylim jernst giovenko guhjy kengg sebastien_vigneau jackjackjjj ghattem epigenetics ksha inesdesantiago dquest JLab Plantandetc
	Sequence-dependent bending propensity of DNA as revealed by DNase I: parameters for trinucleotides. [My Copy] The EMBO journal, Vol. 14, No. 8. (18 April 1995), pp. 1812-1818. by I. Brukner, R. Sánchez, D. Suck, S. Pongor posted to structure dna by rsaito on 2009-10-13 10:32:50 as along with 2 people absterga hagechouchin443
	Sequence-dependent DNA structure: tetranucleotide conformational maps. [My Copy] Journal of molecular biology, Vol. 295, No. 1. (7 January 2000), pp. 85-103. by M. J. Packer, M. P. Dauncey, C. A. Hunter posted to structure dna by rsaito on 2009-10-13 10:28:17 as along with 1 person hagechouchin443
	The antisense transcriptomes of human cells. [My Copy] Science (New York, N.Y.), Vol. 322, No. 5909. (19 December 2008), pp. 1855-1857. by Yiping He, Bert Vogelstein, Victor E. Velculescu, Nickolas Papadopoulos, Kenneth W. Kinzler posted to high-throuput_sequencing antisense by rsaito on 2009-09-30 04:41:28 as along with 20 people and 2 groups guhjy gdb maximilianh xingxu hagechouchin443 caseybrown jfr fhalbrit inesdesantiago skoch3 Zephyrus djkt strands balicea shikin coela ealloza diaz0058 gfliustu jbhiatt Koch_Lab Roswell Cancer Crosstalk
	Generic eukaryotic core promoter prediction using structural features of DNA [My Copy] Genome Research, Vol. 18, No. 2. (20 February 2008), pp. 310-323. by Thomas Abeel, Yvan Saeys, Eric Bonnet, Pierre RouzÃ©, Yves Van de Peer posted to structure promoter dna by rsaito on 2009-09-18 02:55:20 as along with 8 people timflutre chvlyl hagechouchin443 tonamswish cjeans cabbagezs maximilianh idonaldson
	The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. [My Copy] Nature genetics, Vol. 41, No. 5. (19 May 2009), pp. 553-562. by FANTOM Consortium, Harukazu Suzuki, Alistair R. Forrest, et al.Erik van Nimwegen, Carsten O. Daub, Piotr J. Balwierz, Katharine M. Irvine, Timo Lassmann, Timothy Ravasi, Yuki Hasegawa, Michiel J. de Hoon, Shintaro Katayama, Kate Schroder, Piero Carninci, Yasuhiro Tomaru, Mutsumi Kanamori-Katayama, Atsutaka Kubosaki, Altuna Akalin, Yoshinari Ando, Erik Arner, Maki Asada, Hiroshi Asahara, Timothy Bailey, Vladimir B. Bajic, Denis Bauer, Anthony G. Beckhouse, Nicolas Bertin, Johan Björkegren, Frank Brombacher, Erika Bulger, Alistair M. Chalk, Joe Chiba, Nicole Cloonan, Adam Dawe, Josee Dostie, Pär G. Engström, Magbubah Essack, Geoffrey J. Faulkner, J. Lynn Fink, David Fredman, Ko Fujimori, Masaaki Furuno, Takashi Gojobori, Julian Gough, Sean M. Grimmond, Mika Gustafsson, Megumi Hashimoto, Takehiro Hashimoto, Mariko Hatakeyama, Susanne Heinzel, Winston Hide, Oliver Hofmann, Michael Hörnquist, Lukasz Huminiecki, Kazuho Ikeo, Naoko Imamoto, Satoshi Inoue, Yusuke Inoue, Ryoko Ishihara, Takao Iwayanagi, Anders Jacobsen, Mandeep Kaur, Hideya Kawaji, Markus C. Kerr, Ryuichiro Kimura, Syuhei Kimura, Yasumasa Kimura, Hiroaki Kitano, Hisashi Koga, Toshio Kojima, Shinji Kondo, Takeshi Konno, Anders Krogh, Adele Kruger, Ajit Kumar, Boris Lenhard, Andreas Lennartsson, Morten Lindow, Marina Lizio, Cameron Macpherson, Norihiro Maeda, Christopher A. Maher, Monique Maqungo, Jessica Mar, Nicholas A. Matigian, Hideo Matsuda, John S. Mattick, Stuart Meier, Sei Miyamoto, Etsuko Miyamoto-Sato, Kazuhiko Nakabayashi, Yutaka Nakachi, Mika Nakano, Sanne Nygaard, Toshitsugu Okayama, Yasushi Okazaki, Haruka Okuda-Yabukami, Valerio Orlando, Jun Otomo, Mikhail Pachkov, Nikolai Petrovsky, Charles Plessy, John Quackenbush, Aleksandar Radovanovic, Michael Rehli, Rintaro Saito, Albin Sandelin, Sebastian Schmeier, Christian Schönbach, Ariel S. Schwartz, Colin A. Semple, Miho Sera, Jessica Severin, Katsuhiko Shirahige, Cas Simons, George St Laurent, Masanori Suzuki, Takahiro Suzuki, Matthew J. Sweet, Ryan J. Taft, Shizu Takeda, Yoichi Takenaka, Kai Tan, Martin S. Taylor, Rohan D. Teasdale, Jesper Tegnér, Sarah Teichmann, Eivind Valen, Claes Wahlestedt, Kazunori Waki, Andrew Waterhouse, Christine A. Wells, Ole Winther, Linda Wu, Kazumi Yamaguchi, Hiroshi Yanagawa, Jun Yasuda, Mihaela Zavolan, David A. Hume, Riken Omics Science Center, Takahiro Arakawa, Shiro Fukuda, Kengo Imamura, Chikatoshi Kai, Ai Kaiho, Tsugumi Kawashima, Chika Kawazu, Yayoi Kitazume, Miki Kojima, Hisashi Miura, Kayoko Murakami, Mitsuyoshi Murata, Noriko Ninomiya, Hiromi Nishiyori, Shohei Noma, Chihiro Ogawa, Takuma Sano, Christophe Simon, Michihira Tagami, Yukari Takahashi, Jun Kawai, Yoshihide Hayashizaki posted to fantom by rsaito on 2009-09-02 05:52:10 as along with 15 people schwartzjmc rdiaz guhjy hagechouchin443 gdb tonamswish burak YukaH coela mtagaya bertelsen xingxu TRHvidsten renatomilani antonkratz
	Dynamic Regulation of Nucleosome Positioning in the Human Genome [My Copy] Cell, Vol. 132, No. 5. (07 March 2008), pp. 887-898. by D. Schones, K. Cui, S. Cuddapah, et al.T. Roh, A. Barski, Z. Wang, G. Wei, K. Zhao posted to nucleosome by rsaito on 2009-08-27 08:17:06 as along with 17 people and 1 group antonkratz polivares megraw hagechouchin443 inesdesantiago coela natstreet aalibes dchughes sleepingcell idonaldson oelemento sameetmehta mikaelhuss vega kengg sonjadaniela JLab
	Principles that govern the folding of protein chains. [My Copy] Science (New York, N.Y.), Vol. 181, No. 96. (20 July 1973), pp. 223-230. by C. B. Anfinsen posted to structure protein by rsaito on 2009-08-21 07:50:19 as along with 7 people dfdong cactus karbak thaliana fjc1 rabio granujilla
	Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment. [My Copy] Science (New York, N.Y.), Vol. 262, No. 5131. (8 October 1993), pp. 208-214. by C. E. Lawrence, S. F. Altschul, M. S. Boguski, J. S. Liu, A. F. Neuwald, J. C. Wootton posted to sequence consensus by rsaito on 2009-08-21 07:31:22 as along with 10 people isimpson Mehlhorn treangen dquest AaronDarling johncumbers jguinney xili03 seitentaisei wenhan
	Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences [My Copy] Journal of Molecular Biology, Vol. 212, No. 4. (20 April 1990), pp. 563-578. by Philipp Bucher posted to weight tata sequence promoter matrix consensus by rsaito on 2009-08-21 07:18:54 as along with 1 person tuck
	Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs. [My Copy] Genome research, Vol. 14, No. 6. (June 2004), pp. 1107-1118. by Haiyuan Yu, Nicholas M. Luscombe, Hao Xin X. Lu, et al.Xiaowei Zhu, Yu Xia, Jing-Dong D. Han, Nicolas Bertin, Sambath Chung, Marc Vidal, Mark Gerstein posted to interolog ppi by rsaito on 2009-07-08 08:04:36 as along with 12 people and 1 group kiekyon thegoose2 robfsouza carlk tharris bicko dragonrez chad_davis balajis koller cjeans cerca C. elegans / WormBase
	Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs". [My Copy] Genome research, Vol. 11, No. 12. (December 2001), pp. 2120-2126. by L. R. Matthews, P. Vaglio, J. Reboul, et al.H. Ge, B. P. Davis, J. Garrels, S. Vincent, M. Vidal posted to interolog ppi by rsaito on 2009-07-08 08:02:38 as along with 7 people and 2 groups thegoose2 cerca tharris lfriedl nuke2005 bluto cjeans C. elegans / WormBase kdl
	Predicting gene expression from sequence. [My Copy] Cell, Vol. 117, No. 2. (16 April 2004), pp. 185-198. by M. A. Beer, S. Tavazoie posted to expression prediction by rsaito on 2009-06-04 09:25:26 as along with 12 people and 6 groups thegoose2 winterschlaefer tharris ana xwbcn adepace nickluscombe noano koller jrest phoenixzxl klo TranscriptionalRegulationWithThermodynamicModels C. elegans / WormBase structural_bioinformatics Bioinformatics EisenLab EBI-regulation
	Cluster analysis and display of genome-wide expression patterns [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 25. (8 December 1998), pp. 14863-14868. by Michael B. Eisen, Paul T. Spellman, Patrick O. Brown, David Botstein posted to clustering hierarchical microarray by rsaito on 2009-05-15 16:59:39 as along with 34 people and 3 groups antonkratz potatongy drungows colmryan jplatig Neeperando baldigroup daforerog karinlag ronglais operon Borelli pengchy macowell ggrot miguel textoris okarsligil pcahan1 lfriedl balajis nuke2005 lyongu maryee wnpx nirfriedman dquest karfunkel dps kintoki jo_davies tvdbulck bozdagd roys kdl Bioinformatics BUiGEM
	Systematic determination of genetic network architecture. [My Copy] Nature genetics, Vol. 22, No. 3. (July 1999), pp. 281-285. by S. Tavazoie, J. D. Hughes, M. J. Campbell, R. J. Cho, G. M. Church posted to clustering microarray promoter by rsaito on 2009-05-15 16:55:02 as along with 10 people and 2 groups matted biblio24 senseable-urb adepace nickluscombe karfunkel maralena ellakat isimpson jo_davies EisenLab EBI-regulation
	Integrated Genomic and Proteomic Analyses of a Systematically Perturbed Metabolic Network [My Copy] Science, Vol. 292, No. 5518. (4 May 2001), pp. 929-934. by Trey Ideker, Vesteinn Thorsson, Jeffrey A. Ranish, et al.Rowan Christmas, Jeremy Buhler, Jimmy K. Eng, Roger Bumgarner, David R. Goodlett, Ruedi Aebersold, Leroy Hood posted to metabolome ppi system by rsaito on 2009-05-15 16:46:07 as along with 14 people and 3 groups pmendes myzhang isimpson snuppepuppan BioGeek dragonrez bpb okarsligil opheliav wnpx gurkanbebek raiyar thomaskelder shikin Bioinformatics steinmetzlab GeneGo
	Relating Three-Dimensional Structures to Protein Networks Provides Evolutionary Insights [My Copy] Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941. by Philip M. Kim, Long J. Lu, Yu Xia, Mark B. Gerstein posted to motif ppi by rsaito on 2009-05-15 16:35:18 as along with 23 people and 2 groups ucbcjbm pablocarb mgomes MatthiasReimann cerca bicko lfriedl chad_davis Einat tny choonpeng timflutre grahamc ramensky massivemayhem efge lpfernandes cdeane Pao-Yang phoenixzxl carlk paolomarcatili saket structural_bioinformatics kdl
	Automated de novo prediction of native-like RNA tertiary structures [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 37. (11 September 2007), pp. 14664-14669. by Rhiju Das, David Baker posted to 3d prediction rna by rsaito on 2009-05-15 16:21:52 as along with 8 people and 2 groups fisherp jwm marcius eckart_bindewald zwang physics Ema reyez BioinfoCIPF SGU-CIPF
	Comparative phosphoproteomics reveals evolutionary and functional conservation of phosphorylation across eukaryotes [My Copy] Genome Biology, Vol. 9 (01 October 2008), R144. by Jos Boekhorst, Bas van Breukelen, Albert J. R. Heck, Berend Snel posted to kinase by rsaito on 2009-05-13 08:32:04 as along with 2 people guhjy neils
	Global analysis of protein phosphorylation in yeast [My Copy] Nature, Vol. 438, No. 7068., pp. 679-684. by Jason Ptacek, Geeta Devgan, Gregory Michaud, et al.Heng Zhu, Xiaowei Zhu, Joseph Fasolo, Hong Guo, Ghil Jona, Ashton Breitkreutz, Richelle Sopko, Rhonda R. Mccartney, Martin C. Schmidt, Najma Rachidi, Soo-Jung Lee, Angie S. Mah, Lihao Meng, Michael J. R. Stark, David F. Stern, Claudio De Virgilio, Mike Tyers, Brenda Andrews, Mark Gerstein, Barry Schweitzer, Paul F. Predki, Michael Snyder posted to kinome by rsaito on 2009-05-13 08:28:32 as along with 11 people and 1 group nedwards coela nzm MarcJungbluth tmmurali tuck balabu nickluscombe koller carlk neils EBI-regulation
	An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets [My Copy] Nature Biotechnology, Vol. 23, No. 11. (04 November 2005), pp. 1391-1398. by Daniel Schwartz, Steven P. Gygi posted to kinome by rsaito on 2009-05-13 08:25:03 as along with 1 person csardas
	Systematic discovery of in vivo phosphorylation networks. [My Copy] Cell, Vol. 129, No. 7. (29 June 2007), pp. 1415-1426. by Rune Linding, Lars Juhl J. Jensen, Gerard J. Ostheimer, et al.Marcel A. van Vugt, Claus Jørgensen, Ioana M. Miron, Francesca Diella, Karen Colwill, Lorne Taylor, Kelly Elder, Pavel Metalnikov, Vivian Nguyen, Adrian Pasculescu, Jing Jin, Jin Gyoon G. Park, Leona D. Samson, James R. Woodgett, Robert B. Russell, Peer Bork, Michael B. Yaffe, Tony Pawson posted to kinome by rsaito on 2009-05-13 08:18:12 as along with 21 people and 2 groups jaimie nzm nedwards MatthiasReimann ptrobajo guhjy skhadar julius zwang cdppublications lp2 psique robrussell snowcrash larsjuhljensen Evangelia renatomilani carlk daed chad_davis bouncingbudha SysbioMPI-TCells Durbin group
	Global, In Vivo, and Site-Specific Phosphorylation Dynamics in Signaling Networks. [My Copy] Cell, Vol. 127, No. 3. (3 November 2006), pp. 635-648. by Jesper V V. Olsen, Blagoy Blagoev, Florian Gnad, et al.Boris Macek, Chanchal Kumar, Peter Mortensen, Matthias Mann posted to kinome time-series by rsaito on 2009-05-13 08:12:47 as along with 7 people nzm coela guhjy aswin csardas carlk nsamways
	Functional Organization of the S. cerevisiae Phosphorylation Network [My Copy] Cell, Vol. 136, No. 5. (06 March 2009), pp. 952-963. by Dorothea Fiedler, Hannes Braberg, Monika Mehta, et al.Gal Chechik, Gerard Cagney, Paromita Mukherjee, Andrea C. Silva, Michael Shales, Sean R. Collins, Sake van Wageningen posted to genetic interaction kinase kinome network phosphate by rsaito on 2009-05-12 05:05:07 as along with 8 people dakelley colmryan hryk abaryshnikova coela arne nzm absterga

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kinome	5
nucleosome	5
ppi	4
promoter	4
structure	4
dna	3
methylation	3
transcription	3
clustering	2
consensus	2
fantom	2
high-throuput_sequencing	2
interolog	2
kinase	2
microarray	2
prediction	2
rna	2
sequence	2
3d	1
antisense	1
escherichia_coli	1
expression	1
genetic	1
hierarchical	1
interaction	1
matrix	1
metabolome	1
motif	1
network	1
phosphate	1
protein	1
review	1
system	1
tata	1
time-series	1
translation	1
weight	1

rsaito's library 31 articles Export

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