rsantana's library 985 articles Export

Ordered by to_read.

	Embracing Statistical Challenges in the Information Technology Age [My Copy] Technometrics, Vol. 49, No. 3. (August 2007), pp. 237-248. by Yu, Bin posted to graphical-models learning by rsantana on 2008-03-14 16:56:28 as along with 1 person davidr
	Conformational analysis of the backbone-dependent rotamer preferences of protein sidechains. [My Copy] Nat Struct Biol, Vol. 1, No. 5. (May 1994), pp. 334-340. by R. L. Dunbrack, M. Karplus posted to protein rotamers sidechains by rsantana on 2007-10-26 23:41:38 as along with 3 people and 1 group nknii kazemi jwm TCR_Signaling
	Belief-Propagation for Weighted b-Matchings on Arbitrary Graphs and its Relation to Linear Programs with Integer Solutions [My Copy] (8 Sep 2007) by Mohsen Bayati, Christian Borgs, Jennifer Chayes, Riccardo Zecchina posted to graphs inference optimization propagation by rsantana on 2007-09-14 21:57:47 as along with 3 people ansobol daniel51 euclid
	Solving Constraint Satisfaction Problems through Belief Propagation-guided decimation [My Copy] (11 Sep 2007) by Andrea Montanari, Federico Ricci-Tersenghi, Guilhem Semerjian posted to constraints decimation inference optimization propagation by rsantana on 2007-09-14 21:55:01 as along with 2 people and 6 groups A_Olympia euclid Philosophy_of_Information Blog_and_Wiki_Research Algorithms metric_embeddings TCS Polytopes
	Machine Learning and Its Applications to Biology. [My Copy] PLoS Comput Biol, Vol. 3, No. 6. (29 June 2007) by Adi L L. Tarca, Vincent J J. Carey, Xue-Wen W. Chen, Roberto Romero, Sorin Drăghici posted to bioinformatics by rsantana on 2007-09-03 21:58:21 as along with 5 people and 1 group klouie jfr chad_davis gsiwo groepl Bioinformatics
	Dynamic Conditional Random Fields [My Copy] by For J. Labeling posted to graphical-models inference markov-fields propagation by rsantana on 2007-08-30 12:08:14 as along with 5 people albert_swart weiweiguo g000nz0 qazsxdr yotarow
	Genetic Particle Swarm Optimization Based on Estimation of Distribution [My Copy] Bio-Inspired Computational Intelligence and Applications (2007), pp. 287-296. by Jiahai Wang posted to edas optimization swarms by rsantana on 2007-08-29 16:32:37 as along with 1 person and 3 groups nojhan EvolutionaryComputation Metaheuristics Optimization
	The computational complexity of some classical problems from statistical physics [My Copy] (1990) by D. Welsh posted to complexity optimization by rsantana on 2007-07-24 12:31:22 as along with 3 people and 4 groups ansobol euclid gane5h Algorithms metric_embeddings TCS Polytopes
	Sorting and Selection in Posets [My Copy] (10 Jul 2007) by Constantinos Daskalakis, Richard M. Karp, Elchanan Mossel, Samantha Riesenfeld, Elad Verbin posted to factor-graphs graphical-models graphs kikuchi-approximations by rsantana on 2007-07-24 12:30:17 as along with 3 people ansobol jrw pirapira
	The mutual information: detecting and evaluating dependencies between variables. [My Copy] Bioinformatics, Vol. 18 Suppl 2 (2002) by R. Steuer, J. Kurths, C. O. Daub, J. Weise, J. Selbig posted to graphs modularity network by rsantana on 2007-06-06 11:34:04 as along with 8 people and 1 group arider1 kemalpak BragilMassoud garyfeng anon_pl wongmld RobMills ebalp ReadingLab
	Frustration and hydrophobicity interplay in protein folding and protein evolution. [My Copy] J Chem Phys, Vol. 125, No. 8. (28 August 2006) by L. C. Oliveira, R. T. Silva, V. B. Leite, J. Chahine posted to frustration hp-model protein by rsantana on 2007-05-29 12:34:52 as along with 2 people and 1 group kracher saunders Immunoinformatics
	Exploring the origins of topological frustration: design of a minimally frustrated model of fragment B of protein A. [My Copy] Proc Natl Acad Sci U S A, Vol. 96, No. 22. (26 October 1999), pp. 12512-12517. by J. E. Shea, J. N. Onuchic, C. L. Brooks posted to bioinformatics frustration protein by rsantana on 2007-05-29 12:13:21 as along with 1 person and 1 group Einat structural_bioinformatics
	A framework for describing topological frustration in models of protein folding. [My Copy] J Mol Biol, Vol. 362, No. 3. (22 September 2006), pp. 605-621. by T. S. Norcross, T. O. Yeates posted to bioinformatics frustration protein by rsantana on 2007-05-29 12:04:01 as along with 1 person choonpeng
	Shaping up the protein folding funnel by local interaction: Lesson from a structure prediction study [My Copy] PNAS, Vol. 103, No. 9. (28 February 2006), pp. 3141-3146. by George Chikenji, Yoshimi Fujitsuka, Shoji Takada posted to bioinformatics hp-model protein by rsantana on 2007-05-28 10:29:08 as along with 5 people flbarroso xingwuliu eckart_bindewald wouterboomsma saunders
	Simultaneous determination of protein structure and dynamics [My Copy] Nature, Vol. 433, No. 7022. (13 January 2005), pp. 128-132. by Kresten Lindorff-Larsen, Robert B. Best, Mark A. Depristo, Christopher M. Dobson, Michele Vendruscolo posted to protein by rsantana on 2007-05-14 20:08:17 as along with 15 people and 3 groups Diego_Prada xdeupi A_Coletta_Thesis karbak apaydin barry lillekatt baaden lna dgront allmensch daevans jlh64 biehl rph Structural Biology Group TorVergata structural_bioinformatics Bioinformatics
	Side Chain-Positioning as an Integer Programming Problem [My Copy] In WABI '01: Proceedings of the First International Workshop on Algorithms in Bioinformatics (2001), pp. 128-141. by Olivia Eriksson, Yishao Zhou, Arne Elofsson posted to protein sidechains by rsantana on 2007-05-14 20:07:11 as along with 1 person apaydin
	Inferential Structure Determination [My Copy] Science, Vol. 309, No. 5732. (08 July 2005), pp. 303-306. by Wolfgang Rieping, Michael Habeck, Michael Nilges posted to bayesian inference protein by rsantana on 2007-05-14 20:04:15 as along with 3 people kumar_physics apaydin dgront
	The magnitude of the backbone conformational entropy change in protein folding. [My Copy] Proteins, Vol. 25, No. 2. (June 1996), pp. 143-156. by J. A. D'Aquino, J. Gómez, V. J. Hilser, K. H. Lee, L. M. Amzel, E. Freire posted to bioinformatics entropy protein by rsantana on 2007-05-14 19:58:06 as along with 1 person apaydin
	On the Convergence of Kikuchi's Natural Iteration Method [My Copy] Journal of Statistical Physics, Vol. 119, No. 3-4. (May 2005), pp. 659-675. by Marco Pretti posted to entropy kikuchi-approximations propagation region-graphs by rsantana on 2007-05-14 08:55:10 as
	Approximate inference and constrained optimization [My Copy] (2003) by T. Heskes, K. Albers, B. Kappen posted to constraints inference optimization propagation by rsantana on 2007-04-26 18:13:13 as
	A message-passing algorithm with damping [My Copy] Journal of Statistical Mechanics: Theory and Experiment, Vol. 2005, No. 11. (November 2005), P11008. by Marco Pretti posted to damping propagation by rsantana on 2007-04-26 18:09:33 as
	Pair correlations in the cluster variation approximation [My Copy] Physica A: Statistical and Theoretical Physics, Vol. 111, No. 1-2. (March 1982), pp. 200-216. by J. M. Sanchez posted to entropy interactions kikuchi-approximations region-graphs by rsantana on 2007-04-26 17:59:10 as
	Exact Solution of the Muñoz-Eaton Model for Protein Folding [My Copy] Physical Review Letters, Vol. 88, No. 25. (6 Jun 2002), 258101. by Pierpaolo Bruscolini, Alessandro Pelizzola posted to entropy kikuchi-approximations protein realizability region-graphs by rsantana on 2007-04-26 17:46:34 as
	Correlation Functions by Cluster Variation Method for Ising Model with NN, NNN, and Plaquette Interactions [My Copy] Journal of Statistical Physics, Vol. 94, No. 1. (1 January 1999), pp. 67-89. by E. N. M. Cirillo, G. Gonnella, M. Troccoli, A. Maritan posted to entropy interactions kikuchi-approximations region-graphs by rsantana on 2007-04-22 13:34:07 as along with 1 person dpf
	On the convergence of Kikuchi's natural iteration method [My Copy] (27 Apr 2004) by Marco Pretti posted to entropy kikuchi-approximations region-graphs by rsantana on 2007-04-22 13:26:54 as
	Deriving exact results for Ising-like models from the cluster variation method [My Copy] Nuclear Physics B - Proceedings Supplements In Proceedings of the XVIIth International Symposium on Lattice Field Theory, Vol. 83-84 (April 2000), pp. 706-708. by Alessandro Pelizzola posted to entropy kikuchi-approximations region-graphs by rsantana on 2007-04-22 13:15:35 as
	Entropy and global Markov properties [My Copy] Communications in Mathematical Physics, Vol. 126, No. 3. (28 January 1990), pp. 469-482. by S. Goldstein, R. Kuik, A. Schlijper posted to entropy kikuchi-approximations markov-network region-graphs by rsantana on 2007-04-22 13:02:07 as
	Random Forests [My Copy] Machine Learning, Vol. 45, No. 1. (October 2001), pp. 5-32. by Leo Breiman posted to graphical-models learning random-forests by rsantana on 2007-04-17 10:29:06 as along with 1 person rabio
	Progress in Modeling of Protein Structures and Interactions [My Copy] Science, Vol. 310, No. 5748. (28 October 2005), pp. 638-642. by Ora Schueler-Furman, Chu Wang, Phil Bradley, Kira Misura, David Baker posted to bioinformatics interactions protein by rsantana on 2007-04-17 10:25:40 as along with 18 people and 3 groups krapnik rabio ucbcjbm paddydu flbarroso thaliana jwm vavi bicko KyuhoLee marcius eweaver tny nickolay dgront mirzazadeh insectopalo barry BioinfoCIPF SGU-CIPF structural_bioinformatics
	Information Theory, Inference & Learning Algorithms [My Copy] (15 June 2002) by David J. C. MacKay posted to entropy graphical-models inference by rsantana on 2007-04-03 12:40:14 as along with 60 people and 5 groups flips Sergey_gerbek vgauthier foekenev gkatsi pjmaybank serebryakov mdengler jorgeac Fantozzi ARobson betting awarlau Adso dullhunk brian Maderlock alexzeh thefillm pprett ppeeling A_Olympia ansobol yaroslavvb JoSeK ingo jrw rpadams gyuli dariusb simonjudge leidner bayesian BarrosH wnpx filippone marcosmuller danielaugot zielaj daveh spirit_of_numenor sbarthelme anon_pl dwf petrijooste wowbagger nrubens chrisc fishtank rwilliamson poluxmoon robertoalamino brianmc lop matjes delip markusd ekatsyrk luispedro robotact Philosophy_of_Information Blog_and_Wiki_Research AssistiveTechnology inference-group ComplexAdaptiveSystems
	Estimating Continuous Distributions in Bayesian Classifiers [My Copy] pp. 338-345. by George H. John, Pat Langley posted to bayesian bayesian-networks continuous-edas graphical-models by rsantana on 2007-04-03 12:36:40 as along with 7 people and 2 groups eddymier JoSeK garyfeng cdnewbee xiaoyan2006 azazello meisi ReadingLab VT_DLRL
	Cluster variation method in statistical physics and probabilistic graphical models [My Copy] Journal of Physics A: Mathematical and General, Vol. 38, No. 33. (19 August 2005), pp. R309-R339. by Alessandro Pelizzola posted to graphical-models kikuchi-approximations mean-field propagation region-graphs by rsantana on 2007-04-03 10:56:57 as along with 2 people and 1 group lfriedl dpf kdl
	Cluster graph modification problems [My Copy] Discrete Appl. Math., Vol. 144, No. 1-2. (2004), pp. 173-182. by Ron Shamir, Roded Sharan, Dekel Tsur posted to clustering factor-graphs graphical-models by rsantana on 2007-03-20 12:41:19 as along with 2 people bigbossman mmartin
	The Discretizable Molecular Distance Geometry Problem [My Copy] (5 Aug 2006) by Carlile Lavor, Leo Liberti, Nelson Maculan posted to protein-design protein by rsantana on 2007-02-06 19:23:33 as
	Network Analysis in the Social Sciences [My Copy] Science, Vol. 323, No. 5916. (13 February 2009), pp. 892-895. by Stephen P. Borgatti, Ajay Mehra, Daniel J. Brass, Giuseppe Labianca posted to graphs network by rsantana on 2009-05-28 12:27:33 as along with 28 people and 3 groups colmryan orzenil rrbarb vachicba jaspervoskuilen quintosol rcrane rdiaz aalves eegilbert paulovn ddahlem acrmartins donpellegrino Kovanen phreeza Zephyrus sebastien_vigneau stringertheory zhangyangli matthijs pkonings pick600 mstumpf jago trfield kshundyak cgravlee BCDC Lab Notebook ACED study group on social networks Med Anthro @ UF
	Unraveling Protein Networks with Power Graph Analysis [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108. by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder posted to graphs network protein by rsantana on 2008-08-13 17:55:56 as along with 24 people and 2 groups colmryan carlk saket diamantis yyby jfr jiny aramesh2 AbnerCYH jmuhlich MatthiasReimann royerloic Ema lptolik kengg roys reyez tmmurali nuin Borelli askrajiv renatomilani stajich sebk Mycology OPIG
	The discovery of structural form. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 31. (5 August 2008), pp. 10687-10692. by Charles Kemp, Joshua B. Tenenbaum posted to data-mining graphs learning by rsantana on 2008-08-13 17:54:01 as along with 30 people and 3 groups briordan lmaurits anon_pl mthomure TRHvidsten ckai1 prydzews qwermish thiagomanel linhares vlachmore stober nojhan stringertheory thefillm amatos markstoehr uhhhhhhhhhhm A_Olympia tmmurali jmchauvet shigepong tbloomf kevinemamy markusd jborn deubel guhjy Zephyrus jago Optimization logics of knowledge Roswell Cancer Crosstalk
	Sexual reproduction reshapes the genetic architecture of digital organisms [My Copy] Proceedings of the Royal Society B: Biological Sciences, Vol. 273, No. 1585. (22 February 2006), pp. 457-464. by Dusan Misevic, Charles Ofria, Richard E. Lenski posted to complexity modularity by rsantana on 2007-09-15 22:51:21 as along with 2 people and 2 groups mattjb qwermish ComplexAdaptiveSystems DSTO-CAS
	Mining Functional Modules in Genetic Networks with Decomposable Graphical Models [My Copy] OMICS: A Journal of Integrative Biology, Vol. 8, No. 2. (July 2004), pp. 176-188. by Mathaus Dejori, Anton Schwaighofer, Volker Tresp, Martin Stetter posted to bioinformatics data-mining graphical-models by rsantana on 2007-09-05 22:02:47 as along with 2 people and 2 groups tjtaylor DavidEdwards ic4 generif_paper
	An ant algorithm for the conformational analysis of flexible molecules [My Copy] Journal of Computational Chemistry, Vol. 9999, No. 9999. (2007), NA. by Frits Daeyaert, Marc De Jonge, Luc Koymans, Maarten Vinkers posted to aco bioinformatics optimization by rsantana on 2007-05-18 18:51:10 as along with 6 people and 1 group npt11tpn BragilMassoud gane5h samjlord jwagoner superpyrin moernerlab
	Machine learning in bioinformatics: A brief survey and recommendations for practitioners [My Copy] Computers in Biology and Medicine In Intelligent Technologies in Medicine and Bioinformatics, Vol. 36, No. 10. (October 2006), pp. 1104-1125. by Harish Bhaskar, David C. Hoyle, Sameer Singh posted to learning bioinformatics by rsantana on 2007-02-08 17:20:08 as along with 3 people svozil drmabuse xili03
	Simplex Crossover and Linkage Identification: Single-Stage Evolution vS. Multi-Stage Evolution [My Copy] (2002) by Shigeyoshi Tsutsui, David E. Goldberg posted to linkage genetic-algorithms by rsantana on 2007-02-08 17:08:35 as along with 1 person csights
	The sensitivity of PBIL to the learning rate, and how detailed balance can remove it [My Copy] In Foundations of Genetic Algorithms 7 (FOGA VII) (2003) by J. L. Shapiro edited by C. Cotta, De Jong, R. Poli, J. Rowe posted to pbil edas eda-theory by rsantana on 2007-02-08 17:07:19 as along with 1 person csights
	Probabilistic modeling for continuous EDA with Boltzmann selection and Kullback-Leibeler divergence [My Copy] In GECCO '06: Proceedings of the 8th annual conference on Genetic and evolutionary computation (2006), pp. 389-396. by Cai Yunpeng, Sun Xiaomin, Jia Peifa posted to selection learning edas continuous-edas by rsantana on 2007-01-19 19:43:41 as along with 2 people and 4 groups nojhan lmarti EvolutionaryComputation Metaheuristics Optimization estimation_of_distribution_algorithms
	Robust optimization - A comprehensive survey [My Copy] Computer Methods in Applied Mechanics and Engineering, Vol. 196, No. 33-34. (1 July 2007), pp. 3190-3218. by Hans-Georg Beyer, Bernhard Sendhoff posted to evolutionary-computation heuristics optimization by rsantana on 2007-09-14 22:03:41 as along with 13 people and 6 groups jorgeac troussier avoregnitiv ansobol pdlug ddahlem pverstra quaranta nojhan dilbert hugoduncan lboussou jago EvolutionaryComputation Metaheuristics Optimization SORG Simulation of operations and interactions Optimisation Robuste - Robust Optimization
	Quantum Graphical Models and Belief Propagation [My Copy] (9 Aug 2007) by Matthew Leifer, David Poulin posted to graphical-models inference markov-network propagation tree by rsantana on 2007-09-07 11:48:35 as along with 5 people ansobol pdlug jrw artur sflammia
	Predicting Protein Folds with Structural Repeats Using a Chain Graph Model [My Copy] by Yan Liu, Eric P. Xing, Jaime Carbonell posted to graphical-models protein by rsantana on 2007-04-03 10:42:35 as
	Segmentation Conditional Random Fields (SCRFs): A New Approach for Protein Fold Recognition [My Copy] by Yan Liu, Jaime Carbonell, Peter Weigele, Vanathi Gopalakrishnan posted to factor-graphs graphical-models protein by rsantana on 2007-04-03 10:41:47 as
	Modularity optimization in community detection of complex networks [My Copy] EPL (Europhysics Letters), Vol. 87, No. 3. (2009), 38002. by X. S. Zhang, R. S. Wang, Y. Wang, et al.J. Wang, Y. Qiu, L. Wang, L. Chen posted to optimization network modularity graphs by rsantana on 2009-09-16 15:16:20 as along with 1 person Bolozna
	Complex systems: Network thinking [My Copy] Artificial Intelligence In Special Review Issue, Vol. 170, No. 18. (December 2006), pp. 1194-1212. by Melanie Mitchell posted to complexity network by rsantana on 2009-07-02 13:45:38 as along with 8 people and 1 group kentz ddahlem scritic achiar grisogono watson Diego_Prada robotact DSTO-CAS

Note: You may cite this page as: http://www.citeulike.org/user/rsantana/order/to_read

Result page: 1 2 3 4 5 6 7 8 9 10 Next

bibtex-import	329
edas	185
protein	110
genetic-algorithms	92
graphical-models	82
optimization	70
propagation	59
eda-theory	53
bioinformatics	47
learning	47
ga-theory	44
bayesian-edas	40
kikuchi-approximations	39
graphs	35
inference	34
region-graphs	33
complexity	31
entropy	31
network	27
tree	24
boa	23
fitness	19
bayesian	18
clustering	18
mixtures	18
evolutionary-computation	17
umda	17
bayesian-networks	16
continuous-edas	16
fda	16
sampling	15
markov-network	13
constraints	12
multiobjective	11
protein-design	11
partial-evaluation	10
rotamers	10
sidechains	10
approximations	9
linkage	9
neuroscience	9
factor-graphs	8
interactions	8
selection	8
genetic-programming	7
hp-model	7
markov-chains	7
modularity	7
pada	7
classifier-systems	6
data-mining	6
ising	6
mean-field	6
sat	6
adaptation	5
monte-carlo	5
turing-machines	5
aco	4
frustration	4
gaussian	4
markov-fields	4
pbil	4
schema-theory	4
testors	4
vision	4
genetics	3
gibbs-sampling	3
ipf	3
mateda	3
neural-networks	3
pattern-recognition	3
snps	3
bmda	2
cavity-method	2
classifiers	2
decimation	2
dynamic-problems	2
heuristics	2
mutation	2
neighborhood-search	2
r	2
reinforcement-learning	2
second-life	2
software	2
swarms	2
testor	2
turing-machine	2
unitation-functions	2
visualization	2
vns	2
artificial-life	1
ba	1
causality	1
chordal-graphs	1
circuit-reconstruction	1
damping	1
dimensionality-reduction	1
dynamic-optimization	1
ecga	1
fuzzy	1
ica	1
inf	1
max-configurations	1
mdl	1
philosophy	1
qsar	1
random-forests	1
realizability	1
rna	1
robotics	1
spanish	1
tabu-search	1
thesis	1
time-continuation	1
xcs	1

rsantana's library 985 articles Export

rsantana's tags