rsantana's bioinformatics [47 articles] Export

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	Fast procedure for reconstruction of full-atom protein models from reduced representations. [My Copy] Journal of computational chemistry, Vol. 29, No. 9. (15 July 2008), pp. 1460-1465. by Piotr Rotkiewicz, Jeffrey Skolnick posted to bioinformatics protein rotamers by rsantana on 2009-02-07 11:23:36 as along with 5 people Gabriel439 sebk apaydin mijam middledomain
	Differentiable, multi-dimensional, knowledge-based energy terms for torsion angle probabilities and propensities [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by El-Ad D. Amir, Nir Kalisman, Chen Keasar posted to bioinformatics protein rotamers by rsantana on 2009-02-07 11:14:31 as along with 2 people dgront mijam
	Proteomics, networks and connectivity indices. [My Copy] Proteomics, Vol. 8, No. 4. (February 2008), pp. 750-778. by H. González-Díaz, Y. González-Díaz, L. Santana, F. M. Ubeira, E. Uriarte posted to bioinformatics graphs network protein by rsantana on 2009-02-07 10:57:22 as along with 3 people Scis0000002 guhjy ptrobajo
	A review of feature selection techniques in bioinformatics [My Copy] Bioinformatics, Vol. 23, No. 19. (1 October 2007), pp. 2507-2517. by Yvan Saeys, Inaki Inza, Pedro Larranaga posted to bioinformatics data-mining edas protein by rsantana on 2009-02-07 10:52:35 as along with 27 people and 1 group Shibby zufar stharward jjrodriguez briordan phoenixzxl ipark-kaist prerna svozil bertelsen VGreiff druvus jfr giovenko guhjy chad_davis aviad_work frohike grahamc shigepong lp2 cabbagezs ryanraaum vietanh0 eacosta aaalxy srp33 Bioinformatics
	Disease Gene Explorer: Display Disease Gene Dependency by Combining Bayesian Networks with Clustering [My Copy] In CSB '04: Proceedings of the 2004 IEEE Computational Systems Bioinformatics Conference (2004), pp. 574-575. by Qian Diao, We Hu, Hao Zhong, et al.Juntao Li, Feng Xue, Tao Wang, Yimin Zhang posted to bayesian-networks bioinformatics genetics snps by rsantana on 2008-12-09 23:42:22 as along with 2 people and 2 groups mattjb balicea ComplexAdaptiveSystems DSTO-CAS
	ENPDA: an evolutionary structure-based de novo peptide design algorithm [My Copy] Journal of Computer-Aided Molecular Design, Vol. 19, No. 8. (August 2005), pp. 585-601. by Ignasi Belda, Sergio Madurga, Xavier Llora, et al.Marc Martinell, Teresa Tarrago, Mireia Piqueras, Ernesto Nicolas, Ernest Giralt posted to bioinformatics edas optimization protein protein-design by rsantana on 2008-12-05 12:16:43 as along with 1 person peprovy
	MolDock: A New Technique for High-Accuracy Molecular Docking. [My Copy] J Med Chem, Vol. 49, No. 11. (1 June 2006), pp. 3315-3321. by R. Thomsen, M. H. Christensen posted to bioinformatics fitness optimization protein protein-design by rsantana on 2008-12-05 11:19:01 as along with 3 people and 1 group oteri BragilMassoud yongzhao TSRI_MGL
	Genome-Wide Analysis of Human Disease Alleles Reveals That Their Locations Are Correlated in Paralogous Proteins [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (7 November 2008), e1000218. by Mark Yandell, Barry Moore, Fidel Salas, et al.Chris Mungall, Andrew Macbride, Charles White, Martin G. Reese posted to bioinformatics snps by rsantana on 2008-12-03 11:10:57 as along with 9 people biomcgary druvus daforerog Zalanszabo rdiaz bpcusack cabbagesofdoom grahamc djkt
	Systems Biology: A Brief Overview [My Copy] Science, Vol. 295, No. 5560. (1 March 2002), pp. 1662-1664. by Hiroaki Kitano posted to bioinformatics by rsantana on 2008-12-03 11:08:25 as along with 37 people and 7 groups pjmaybank kokphinchooi schmidtm abhishek_tiwari fgibson roys daforerog Scis0000002 agomez tlse65 fierykylin Adso dansullivanblk joseph_x_zhou reyez softsimu irenas Yanno Borelli wnpx biosv shivakumar3_14 dgront kehan cconboy mmt margaritis grahamc roland_ewald carmaus jdiezperezj maburkitt mertnuhoglu edvin lenov soramame_0518 nsamways smac dbk-lab biodiversity_conservation Bioinformatics GrassBase dIEMoSIRIS MoSi-Rostock
	Modeling gene-gene interactions using graphical chain models. [My Copy] Human heredity, Vol. 65, No. 1. (2008), pp. 47-56. by R. Foraita, K. Bammann, I. Pigeot posted to bioinformatics genetics graphical-models by rsantana on 2008-10-31 14:26:41 as along with 1 person StatAnika
	Integrated detection and population-genetic analysis of SNPs and copy number variation. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1166-1174. by Steven A. McCarroll, Finny G. Kuruvilla, Joshua M. Korn, et al.Simon Cawley, James Nemesh, Alec Wysoker, Michael H. Shapero, Paul I. de Bakker, Julian B. Maller, Andrew Kirby, Amanda L. Elliott, Melissa Parkin, Earl Hubbell, Teresa Webster, Rui Mei, James Veitch, Patrick J. Collins, Robert Handsaker, Steve Lincoln, Marcia Nizzari, John Blume, Keith W. Jones, Rich Rava, Mark J. Daly, Stacey B. Gabriel, David Altshuler posted to bioinformatics genetics snps by rsantana on 2008-10-07 16:13:01 as along with 20 people and 1 group shikin vplagnol buyske turnersd sameersoi gruberjd Hans45 pdexheimer madreach waszak caseybrown Zephyrus psique jbsaltz Ema misonneh djkt daed rdiaz guhjy Roswell Cancer Crosstalk
	Clustering by soft-constraint affinity propagation: applications to gene-expression data [My Copy] Bioinformatics, Vol. 23, No. 20. (15 October 2007), pp. 2708-2715. by Michele Leone, Sumedha, Martin Weigt posted to bioinformatics clustering propagation by rsantana on 2008-05-20 16:18:01 as along with 5 people guhjy jmeppley aviad_work hpaces XIANG
	Accurate prediction of gene feedback circuit behavior from component properties [My Copy] Mol Syst Biol, Vol. 3 (13 November 2007) by Nitzan Rosenfeld, Jonathan W. Young, Uri Alon, Peter S. Swain, Michael B. Elowitz posted to bioinformatics genetic-algorithms by rsantana on 2008-01-06 18:06:20 as along with 4 people Antoine_Decrulle austin balicea cjeans
	Biological impacts and context of network theory. [My Copy] The Journal of experimental biology, Vol. 210, No. Pt 9. (1 May 2007), pp. 1548-1558. by E. Almaas posted to bioinformatics complexity graphs network by rsantana on 2007-12-29 20:25:41 as along with 12 people and 4 groups chica schwartzjmc diamantis kentz mtagaya guhjy cmmorel balicea AbnerCYH jwdietrich jaspervoskuilen wayne7513 MathBio Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
	Mining Functional Modules in Genetic Networks with Decomposable Graphical Models [My Copy] OMICS: A Journal of Integrative Biology, Vol. 8, No. 2. (July 2004), pp. 176-188. by Mathaus Dejori, Anton Schwaighofer, Volker Tresp, Martin Stetter posted to bioinformatics data-mining graphical-models by rsantana on 2007-09-05 22:02:47 as along with 2 people and 2 groups tjtaylor DavidEdwards ic4 generif_paper
	Machine Learning and Its Applications to Biology. [My Copy] PLoS Comput Biol, Vol. 3, No. 6. (29 June 2007) by Adi L L. Tarca, Vincent J J. Carey, Xue-Wen W. Chen, Roberto Romero, Sorin Drăghici posted to bioinformatics by rsantana on 2007-09-03 21:58:21 as along with 5 people and 1 group klouie jfr chad_davis gsiwo groepl Bioinformatics
	Exploring the origins of topological frustration: design of a minimally frustrated model of fragment B of protein A. [My Copy] Proc Natl Acad Sci U S A, Vol. 96, No. 22. (26 October 1999), pp. 12512-12517. by J. E. Shea, J. N. Onuchic, C. L. Brooks posted to bioinformatics frustration protein by rsantana on 2007-05-29 12:13:21 as along with 1 person and 1 group Einat structural_bioinformatics
	A framework for describing topological frustration in models of protein folding. [My Copy] J Mol Biol, Vol. 362, No. 3. (22 September 2006), pp. 605-621. by T. S. Norcross, T. O. Yeates posted to bioinformatics frustration protein by rsantana on 2007-05-29 12:04:01 as along with 1 person choonpeng
	Shaping up the protein folding funnel by local interaction: Lesson from a structure prediction study [My Copy] PNAS, Vol. 103, No. 9. (28 February 2006), pp. 3141-3146. by George Chikenji, Yoshimi Fujitsuka, Shoji Takada posted to bioinformatics hp-model protein by rsantana on 2007-05-28 10:29:08 as along with 5 people flbarroso xingwuliu eckart_bindewald wouterboomsma saunders
	Modelling sequential protein folding under kinetic control [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. e203-210. by Fabien P. Huard, Charlotte M. Deane, Graham R. Wood posted to bioinformatics hp-model protein by rsantana on 2007-05-28 09:13:39 as along with 1 person cdeane
	An ant algorithm for the conformational analysis of flexible molecules [My Copy] Journal of Computational Chemistry, Vol. 9999, No. 9999. (2007), NA. by Frits Daeyaert, Marc De Jonge, Luc Koymans, Maarten Vinkers posted to aco bioinformatics optimization by rsantana on 2007-05-18 18:51:10 as along with 6 people and 1 group npt11tpn BragilMassoud gane5h samjlord jwagoner superpyrin moernerlab
	The magnitude of the backbone conformational entropy change in protein folding. [My Copy] Proteins, Vol. 25, No. 2. (June 1996), pp. 143-156. by J. A. D'Aquino, J. Gómez, V. J. Hilser, K. H. Lee, L. M. Amzel, E. Freire posted to bioinformatics entropy protein by rsantana on 2007-05-14 19:58:06 as along with 1 person apaydin
	RNAlike polymer model: exact calculation on the Bethe lattice [My Copy] (3 Nov 2006) by M. Pretti posted to bioinformatics kikuchi-approximations region-graphs rna by rsantana on 2007-04-22 13:28:16 as
	Progress in Modeling of Protein Structures and Interactions [My Copy] Science, Vol. 310, No. 5748. (28 October 2005), pp. 638-642. by Ora Schueler-Furman, Chu Wang, Phil Bradley, Kira Misura, David Baker posted to bioinformatics interactions protein by rsantana on 2007-04-17 10:25:40 as along with 18 people and 3 groups krapnik rabio ucbcjbm paddydu flbarroso thaliana jwm vavi bicko KyuhoLee marcius eweaver tny nickolay dgront mirzazadeh insectopalo barry BioinfoCIPF SGU-CIPF structural_bioinformatics
	Measuring the similarity of protein structures by means of the universal similarity metric. [My Copy] Bioinformatics, Vol. 20, No. 7. (1 May 2004), pp. 1015-1021. by N. Krasnogor, D. A. Pelta posted to bioinformatics fitness protein by rsantana on 2007-04-17 10:23:38 as along with 4 people and 2 groups ana okarsligil vavi rabio structural_bioinformatics Bioinformatics
	Self Generating Metaheuristics in Bioinformatics: The Proteins Structure Comparison Case [My Copy] pp. 181-201. by N. Krasnogor posted to bioinformatics optimization protein by rsantana on 2007-04-17 10:21:31 as
	Apparent dependence of protein evolutionary rate on number of interactions is linked to biases in protein-protein interactions data sets. [My Copy] BMC Evol Biol, Vol. 3 (2 October 2003) by J. D. Bloom, C. Adami posted to bioinformatics interactions protein by rsantana on 2007-04-16 14:53:13 as along with 4 people and 1 group diamantis bjorns balajis penka Nie
	Why highly expressed proteins evolve slowly [My Copy] (12 Aug 2005) by Allan D. Drummond, Jesse D. Bloom, Christoph Adami, Claus O. Wilke, Frances H. Arnold posted to bioinformatics protein by rsantana on 2007-04-16 14:51:29 as
	Machine learning in bioinformatics: A brief survey and recommendations for practitioners [My Copy] Computers in Biology and Medicine In Intelligent Technologies in Medicine and Bioinformatics, Vol. 36, No. 10. (October 2006), pp. 1104-1125. by Harish Bhaskar, David C. Hoyle, Sameer Singh posted to learning bioinformatics by rsantana on 2007-02-08 17:20:08 as along with 3 people svozil drmabuse xili03
	Feature selection in Bayesian classifiers for the prognosis of survival of cirrhotic patients treated with TIPS [My Copy] J. of Biomedical Informatics, Vol. 38, No. 5. (October 2005), pp. 376-388. by Rosa Blanco, I&\#241;aki Inza, Marisa Merino, Jorge Quiroga, Pedro Larra&\#241;aga posted to bayesian bioinformatics by rsantana on 2006-12-29 17:59:07 as
	Side chain placement using estimation of distribution algorithms [My Copy] Artificial Intelligence in Medicine, Vol. 39, No. 1. (January 2007), pp. 49-63. by Roberto Santana, Pedro Larranaga, Jose A. Lozano posted to sidechains rotamers protein optimization edas bioinformatics by rsantana on 2006-12-21 15:19:01 as along with 2 people mijam carlk
	A novel in-silico approach for QSAR Studies of Anabolic and Androgenic Activities in the 17?-hydroxy-5?-androstane Steroid Family [My Copy] QSAR & Combinatorial Science, Vol. 24, No. 2. (2005), pp. 218-226. by Yoanna maría Alvarez-Ginarte, Rachel Crespo, Luis alberto Montero-Cabrera, et al.José alberto Ruiz-Garcia, Yovani marrero Ponce, Roberto Santana, Eladio Pardillo-Fontdevila, Esther Alonso-Becerra posted to bioinformatics genetic-algorithms qsar by rsantana on 2006-12-21 10:26:56 as
	Using information theory to search for co-evolving residues in proteins. [My Copy] Bioinformatics, Vol. 21, No. 22. (15 November 2005), pp. 4116-4124. by L. C. Martin, G. B. Gloor, S. D. Dunn, L. M. Wahl posted to bioinformatics interactions protein by rsantana on 2006-12-21 10:23:52 as along with 5 people and 1 group zambujo bioinfo caporaso rabio cjeans biomedical-nlp
	All are not equal: A benchmark of different homology modeling programs [My Copy] Protein Sci, Vol. 14, No. 5. (1 May 2005), pp. 1315-1327. by Bjorn Wallner, Arne Elofsson posted to bioinformatics protein by rsantana on 2006-12-21 10:20:09 as along with 6 people and 2 groups cdeane karbak marcius eweaver BioNica hmk BioinfoCIPF SGU-CIPF
	A comparative study of machine-learning methods to predict the effects of single nucleotide polymorphisms on protein function. [My Copy] Bioinformatics, Vol. 19, No. 17. (22 November 2003), pp. 2199-2209. by V. G. Krishnan, D. R. Westhead posted to bioinformatics protein by rsantana on 2006-12-21 10:18:57 as along with 5 people and 3 groups chrn marcius eweaver caporaso rlhsiao biomedical-nlp BioinfoCIPF SGU-CIPF
	$My PDF pe&\#241;a_04_unsupervised.pdf$ Unsupervised learning of Bayesian networks via estimation of distribution algorithms: an application to gene expression data clustering [My Copy] Int. J. Uncertain. Fuzziness Knowl.-Based Syst., Vol. 12, No. SUPPLEMENT. (2004), pp. 63-82. by J. M. Pe&\#241;a, J. A. Lozano, P. Larra&\#241;aga posted to bayesian-edas bioinformatics edas by rsantana on 2006-12-21 10:13:32 as along with 2 people eweaver wnpx
	Machine learning in bioinformatics [My Copy] Brief Bioinform, Vol. 7, No. 1. (27 February 2006), pp. bbk007-112. by Pedro Larranaga, Borja Calvo, Roberto Santana, et al.Concha Bielza, Josu Galdiano, Inaki Inza, Jose A. Lozano, Ruben Armananzas, Guzman Santafe, Aritz Perez, Victor Robles posted to bioinformatics by rsantana on 2006-12-20 20:44:38 as along with 8 people and 2 groups jperkins akastrin svozil jfr yas caporaso dimatura xili03 T_lab biomedical-nlp
	Approximate inference for side-chain prediction [My Copy] (2004) by C. Yanover, Y. Weiss posted to bioinformatics optimization propagation protein by rsantana on 2006-12-20 19:22:37 as
	Primer design using genetic algorithm [My Copy] Bioinformatics, Vol. 20, No. 11. (2004), pp. 1710-1717. by Jain S. Wu, Chungnan Lee, Chien C. Wu, Yow L. Shiue posted to genetic-algorithms bioinformatics by rsantana on 2006-12-20 19:22:37 as
	A permutation-based genetic algorithm for the RNA folding problem: a critical look at selection strategies, crossover operators, and representation issues [My Copy] Biosystems, Vol. 72, No. 1. (2003), pp. 29-41. by Kay C. Wiese, Edward Glen posted to genetic-algorithms bioinformatics by rsantana on 2006-12-20 19:22:37 as
	Global Optimization of Clusters, Crystals, and Biomolecules [My Copy] Science, Vol. 285, No. 5432. (1999) by David J. Wales, Harold A. Scheraga posted to region-graphs optimization bioinformatics by rsantana on 2006-12-20 19:22:37 as
	Multilocus linkage analysis by blocked Gibbs Sampling [My Copy] Statistics and Computing, Vol. 10 (2000), pp. 259-269. by Alun Thomas, Alexander Gutin, Victor Abkevich, Aruna Bansal posted to gibbs-sampling bioinformatics by rsantana on 2006-12-20 19:22:37 as
	Protein Folding in 2-Dimensional Lattices with Estimation of Distribution Algorithms [My Copy] In Proceedings of the First International Symposium on Biological and Medical Data Analysis, Vol. 3337 (2004), pp. 388-398. by Roberto Santana, P. Larrañaga, J. A. Lozano posted to bioinformatics edas hp-model protein by rsantana on 2006-12-20 19:22:34 as
	Feature selection for splice site prediction: A new method using EDA-based feature ranking [My Copy] BMC Bioinformatics, Vol. 5 (2004), pp. 64-75. by Yvan Saeys, Sven Degroeve, Dirk Aeyels, Pierre Rouzé, Yves . de Peer posted to edas bioinformatics by rsantana on 2006-12-20 19:22:32 as
	Fast feature selection using a simple Estimation of Distribution Algorithm: A case study on splice site prediction [My Copy] Bioinformatics, Vol. 19, No. 2. (2003), pp. ii179-ii188. by Yvan Saeys, Sven Degroeve, Dirk Aeyels, Yves . de Peer, Pierre Rouzé posted to edas bioinformatics by rsantana on 2006-12-20 19:22:32 as
	Unsupervised learning of Bayesian networks via estimation of distribution algorithms: An application to gene expression data clustering [My Copy] International Journal of Uncertainty, Fuzziness and Knowledge-Based Systems, Vol. 12, No. 1. (2004), pp. 63-82. by J. M. Peña, J. A. Lozano, P. Larrañaga posted to mixtures edas clustering bioinformatics bayesian-networks by rsantana on 2006-12-20 19:22:30 as
	Genetic algorithms applied to multi-class prediction for the analysis of gene expression data [My Copy] Bioinformatics, Vol. 19, No. 1. (2003) by C. H. Ooi, Patrick Tan posted to genetic-algorithms bioinformatics by rsantana on 2006-12-20 19:22:25 as

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bibtex-import	329
edas	185
protein	110
genetic-algorithms	92
graphical-models	82
optimization	70
propagation	59
eda-theory	53
bioinformatics	47
learning	47
ga-theory	44
bayesian-edas	40
kikuchi-approximations	39
graphs	35
inference	34
region-graphs	33
complexity	31
entropy	31
network	27
tree	24
boa	23
fitness	19
bayesian	18
clustering	18
mixtures	18
evolutionary-computation	17
umda	17
bayesian-networks	16
continuous-edas	16
fda	16
sampling	15
markov-network	13
constraints	12
multiobjective	11
protein-design	11
partial-evaluation	10
rotamers	10
sidechains	10
approximations	9
linkage	9
neuroscience	9
factor-graphs	8
interactions	8
selection	8
genetic-programming	7
hp-model	7
markov-chains	7
modularity	7
pada	7
classifier-systems	6
data-mining	6
ising	6
mean-field	6
sat	6
adaptation	5
monte-carlo	5
turing-machines	5
aco	4
frustration	4
gaussian	4
markov-fields	4
pbil	4
schema-theory	4
testors	4
vision	4
genetics	3
gibbs-sampling	3
ipf	3
mateda	3
neural-networks	3
pattern-recognition	3
snps	3
bmda	2
cavity-method	2
classifiers	2
decimation	2
dynamic-problems	2
heuristics	2
mutation	2
neighborhood-search	2
r	2
reinforcement-learning	2
second-life	2
software	2
swarms	2
testor	2
turing-machine	2
unitation-functions	2
visualization	2
vns	2
artificial-life	1
ba	1
causality	1
chordal-graphs	1
circuit-reconstruction	1
damping	1
dimensionality-reduction	1
dynamic-optimization	1
ecga	1
fuzzy	1
ica	1
inf	1
max-configurations	1
mdl	1
philosophy	1
qsar	1
random-forests	1
realizability	1
rna	1
robotics	1
spanish	1
tabu-search	1
thesis	1
time-continuation	1
xcs	1

rsantana's bioinformatics [47 articles] Export

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