rsantana's protein [110 articles] Export

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	Fast procedure for reconstruction of full-atom protein models from reduced representations. [My Copy] Journal of computational chemistry, Vol. 29, No. 9. (15 July 2008), pp. 1460-1465. by Piotr Rotkiewicz, Jeffrey Skolnick posted to bioinformatics protein rotamers by rsantana on 2009-02-07 11:23:36 as along with 5 people Gabriel439 sebk apaydin mijam middledomain
	Differentiable, multi-dimensional, knowledge-based energy terms for torsion angle probabilities and propensities [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by El-Ad D. Amir, Nir Kalisman, Chen Keasar posted to bioinformatics protein rotamers by rsantana on 2009-02-07 11:14:31 as along with 2 people dgront mijam
	Proteomics, networks and connectivity indices. [My Copy] Proteomics, Vol. 8, No. 4. (February 2008), pp. 750-778. by H. González-Díaz, Y. González-Díaz, L. Santana, F. M. Ubeira, E. Uriarte posted to bioinformatics graphs network protein by rsantana on 2009-02-07 10:57:22 as along with 3 people Scis0000002 guhjy ptrobajo
	A review of feature selection techniques in bioinformatics [My Copy] Bioinformatics, Vol. 23, No. 19. (1 October 2007), pp. 2507-2517. by Yvan Saeys, Inaki Inza, Pedro Larranaga posted to bioinformatics data-mining edas protein by rsantana on 2009-02-07 10:52:35 as along with 27 people and 1 group Shibby zufar stharward jjrodriguez briordan phoenixzxl ipark-kaist prerna svozil bertelsen VGreiff druvus jfr giovenko guhjy chad_davis aviad_work frohike grahamc shigepong lp2 cabbagezs ryanraaum vietanh0 eacosta aaalxy srp33 Bioinformatics
	ENPDA: an evolutionary structure-based de novo peptide design algorithm [My Copy] Journal of Computer-Aided Molecular Design, Vol. 19, No. 8. (August 2005), pp. 585-601. by Ignasi Belda, Sergio Madurga, Xavier Llora, et al.Marc Martinell, Teresa Tarrago, Mireia Piqueras, Ernesto Nicolas, Ernest Giralt posted to bioinformatics edas optimization protein protein-design by rsantana on 2008-12-05 12:16:43 as along with 1 person peprovy
	MolDock: A New Technique for High-Accuracy Molecular Docking. [My Copy] J Med Chem, Vol. 49, No. 11. (1 June 2006), pp. 3315-3321. by R. Thomsen, M. H. Christensen posted to bioinformatics fitness optimization protein protein-design by rsantana on 2008-12-05 11:19:01 as along with 3 people and 1 group oteri BragilMassoud yongzhao TSRI_MGL
	The Role of a Priori Information in the Minimization of Contact Potentials by Means of Estimation of Distribution Algorithms [My Copy] Evolutionary Computation,Machine Learning and Data Mining in Bioinformatics (2007), pp. 247-257. by Roberto Santana, Pedro Larrañaga, Jose Lozano posted to edas interactions protein protein-design tree by rsantana on 2008-08-30 20:04:53 as
	Unraveling Protein Networks with Power Graph Analysis [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108. by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder posted to graphs network protein by rsantana on 2008-08-13 17:55:56 as along with 24 people and 2 groups colmryan carlk saket diamantis yyby jfr jiny aramesh2 AbnerCYH jmuhlich MatthiasReimann royerloic Ema lptolik kengg roys reyez tmmurali nuin Borelli askrajiv renatomilani stajich sebk Mycology OPIG
	Dynamic personalities of proteins [My Copy] Nature, Vol. 450, No. 7172. (12 December 2007), pp. 964-972. by Katherine Henzler-Wildman, Dorothee Kern posted to protein by rsantana on 2008-03-30 23:04:40 as along with 19 people and 1 group victorclaessen saravan Diego_Prada xdeupi viktor21614 ruvido barry pavanghatty chad_davis allmensch choonpeng cjeans sobolevnrm wilbur mijam kjell phoenixzxl higueruelo GeeSharpMinor baker-group
	Efficient rotamer elimination applied to protein side-chains and related spin glasses. [My Copy] Biophys J, Vol. 66, No. 5. (May 1994), pp. 1335-1340. by R. F. Goldstein posted to decimation ising optimization protein sidechains by rsantana on 2008-03-30 22:45:01 as along with 6 people dfgreen dgront bluvsh1 kazemi mijam carlk
	Towards an integrated protein-protein interaction network: a relational markov network approach. [My Copy] J Comput Biol, Vol. 13, No. 2. (March 2006), pp. 145-164. by A. Jaimovich, G. Elidan, H. Margalit, N. Friedman posted to inference optimization propagation protein by rsantana on 2008-02-18 20:45:44 as along with 5 people and 1 group lfriedl wnpx nirfriedman koller iris_2001 kdl
	Conformational analysis of the backbone-dependent rotamer preferences of protein sidechains. [My Copy] Nat Struct Biol, Vol. 1, No. 5. (May 1994), pp. 334-340. by R. L. Dunbrack, M. Karplus posted to protein rotamers sidechains by rsantana on 2007-10-26 23:41:38 as along with 3 people and 1 group nknii kazemi jwm TCR_Signaling
	Side-chain flexibility in protein-ligand binding: the minimal rotation hypothesis. [My Copy] Protein science : a publication of the Protein Society, Vol. 14, No. 4. (April 2005), pp. 1104-1114. by M. I. Zavodszky, L. A. Kuhn posted to protein rotamers sidechains by rsantana on 2007-09-27 18:52:24 as along with 9 people and 2 groups fl ramensky BragilMassoud dgruiz yongzhao nknii blackbart kazemi LamBras TCR_Signaling TSRI_MGL
	Frustration and hydrophobicity interplay in protein folding and protein evolution. [My Copy] J Chem Phys, Vol. 125, No. 8. (28 August 2006) by L. C. Oliveira, R. T. Silva, V. B. Leite, J. Chahine posted to frustration hp-model protein by rsantana on 2007-05-29 12:34:52 as along with 2 people and 1 group kracher saunders Immunoinformatics
	Exploring the origins of topological frustration: design of a minimally frustrated model of fragment B of protein A. [My Copy] Proc Natl Acad Sci U S A, Vol. 96, No. 22. (26 October 1999), pp. 12512-12517. by J. E. Shea, J. N. Onuchic, C. L. Brooks posted to bioinformatics frustration protein by rsantana on 2007-05-29 12:13:21 as along with 1 person and 1 group Einat structural_bioinformatics
	A framework for describing topological frustration in models of protein folding. [My Copy] J Mol Biol, Vol. 362, No. 3. (22 September 2006), pp. 605-621. by T. S. Norcross, T. O. Yeates posted to bioinformatics frustration protein by rsantana on 2007-05-29 12:04:01 as along with 1 person choonpeng
	Shaping up the protein folding funnel by local interaction: Lesson from a structure prediction study [My Copy] PNAS, Vol. 103, No. 9. (28 February 2006), pp. 3141-3146. by George Chikenji, Yoshimi Fujitsuka, Shoji Takada posted to bioinformatics hp-model protein by rsantana on 2007-05-28 10:29:08 as along with 5 people flbarroso xingwuliu eckart_bindewald wouterboomsma saunders
	Modelling sequential protein folding under kinetic control [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. e203-210. by Fabien P. Huard, Charlotte M. Deane, Graham R. Wood posted to bioinformatics hp-model protein by rsantana on 2007-05-28 09:13:39 as along with 1 person cdeane
	Simultaneous determination of protein structure and dynamics [My Copy] Nature, Vol. 433, No. 7022. (13 January 2005), pp. 128-132. by Kresten Lindorff-Larsen, Robert B. Best, Mark A. Depristo, Christopher M. Dobson, Michele Vendruscolo posted to protein by rsantana on 2007-05-14 20:08:17 as along with 15 people and 3 groups Diego_Prada xdeupi A_Coletta_Thesis karbak apaydin barry lillekatt baaden lna dgront allmensch daevans jlh64 biehl rph Structural Biology Group TorVergata structural_bioinformatics Bioinformatics
	Side Chain-Positioning as an Integer Programming Problem [My Copy] In WABI '01: Proceedings of the First International Workshop on Algorithms in Bioinformatics (2001), pp. 128-141. by Olivia Eriksson, Yishao Zhou, Arne Elofsson posted to protein sidechains by rsantana on 2007-05-14 20:07:11 as along with 1 person apaydin
	Inferential Structure Determination [My Copy] Science, Vol. 309, No. 5732. (08 July 2005), pp. 303-306. by Wolfgang Rieping, Michael Habeck, Michael Nilges posted to bayesian inference protein by rsantana on 2007-05-14 20:04:15 as along with 3 people kumar_physics apaydin dgront
	The magnitude of the backbone conformational entropy change in protein folding. [My Copy] Proteins, Vol. 25, No. 2. (June 1996), pp. 143-156. by J. A. D'Aquino, J. Gómez, V. J. Hilser, K. H. Lee, L. M. Amzel, E. Freire posted to bioinformatics entropy protein by rsantana on 2007-05-14 19:58:06 as along with 1 person apaydin
	Exact Solution of the Muñoz-Eaton Model for Protein Folding [My Copy] Physical Review Letters, Vol. 88, No. 25. (6 Jun 2002), 258101. by Pierpaolo Bruscolini, Alessandro Pelizzola posted to entropy kikuchi-approximations protein realizability region-graphs by rsantana on 2007-04-26 17:46:34 as
	Progress in Modeling of Protein Structures and Interactions [My Copy] Science, Vol. 310, No. 5748. (28 October 2005), pp. 638-642. by Ora Schueler-Furman, Chu Wang, Phil Bradley, Kira Misura, David Baker posted to bioinformatics interactions protein by rsantana on 2007-04-17 10:25:40 as along with 18 people and 3 groups krapnik rabio ucbcjbm paddydu flbarroso thaliana jwm vavi bicko KyuhoLee marcius eweaver tny nickolay dgront mirzazadeh insectopalo barry BioinfoCIPF SGU-CIPF structural_bioinformatics
	Measuring the similarity of protein structures by means of the universal similarity metric. [My Copy] Bioinformatics, Vol. 20, No. 7. (1 May 2004), pp. 1015-1021. by N. Krasnogor, D. A. Pelta posted to bioinformatics fitness protein by rsantana on 2007-04-17 10:23:38 as along with 4 people and 2 groups ana okarsligil vavi rabio structural_bioinformatics Bioinformatics
	Self Generating Metaheuristics in Bioinformatics: The Proteins Structure Comparison Case [My Copy] pp. 181-201. by N. Krasnogor posted to bioinformatics optimization protein by rsantana on 2007-04-17 10:21:31 as
	Apparent dependence of protein evolutionary rate on number of interactions is linked to biases in protein-protein interactions data sets. [My Copy] BMC Evol Biol, Vol. 3 (2 October 2003) by J. D. Bloom, C. Adami posted to bioinformatics interactions protein by rsantana on 2007-04-16 14:53:13 as along with 4 people and 1 group diamantis bjorns balajis penka Nie
	Why highly expressed proteins evolve slowly [My Copy] (12 Aug 2005) by Allan D. Drummond, Jesse D. Bloom, Christoph Adami, Claus O. Wilke, Frances H. Arnold posted to bioinformatics protein by rsantana on 2007-04-16 14:51:29 as
	Predicting Protein Folds with Structural Repeats Using a Chain Graph Model [My Copy] by Yan Liu, Eric P. Xing, Jaime Carbonell posted to graphical-models protein by rsantana on 2007-04-03 10:42:35 as
	Segmentation Conditional Random Fields (SCRFs): A New Approach for Protein Fold Recognition [My Copy] by Yan Liu, Jaime Carbonell, Peter Weigele, Vanathi Gopalakrishnan posted to factor-graphs graphical-models protein by rsantana on 2007-04-03 10:41:47 as
	From genes to protein structure and function: novel applications of computational approaches in the genomic era. [My Copy] Trends Biotechnol, Vol. 18, No. 1. (January 2000), pp. 34-39. by J. Skolnick, J. S. Fetrow posted to protein by rsantana on 2007-03-09 10:50:07 as along with 1 person robert
	Bayesian statistical analysis of protein side-chain rotamer preferences. [My Copy] Protein Sci, Vol. 6, No. 8. (August 1997), pp. 1661-1681. by R. L. Dunbrack, F. E. Cohen posted to sidechains rotamers protein bayesian by rsantana on 2007-02-09 19:49:45 as along with 12 people and 2 groups karbak nknii j3xucite dgront blackbart kazemi hmk LamBras mijam jwm phoenixzxl zwang MuraLab TCR_Signaling
	A graph-theory algorithm for rapid protein side-chain prediction. [My Copy] Protein Sci, Vol. 12, No. 9. (September 2003), pp. 2001-2014. by A. A. Canutescu, A. A. Shelenkov, R. L. Dunbrack posted to sidechains rotamers protein bayesian by rsantana on 2007-02-09 19:49:22 as along with 11 people oceanwind mcbla karbak nigham bicko blackbart bluvsh1 mijam jwm carlk newton1234
	Rotamer libraries in the 21st century. [My Copy] Current opinion in structural biology, Vol. 12, No. 4. (August 2002), pp. 431-440. by Roland L. Dunbrack posted to sidechains rotamers protein bayesian by rsantana on 2007-02-09 19:49:01 as along with 9 people and 1 group bmduggan yongzhao dgront blackbart kazemi medic0747 LamBras mijam jwm TSRI_MGL
	Improved modeling of side-chains in proteins with rotamer-based methods: A flexible rotamer model [My Copy] Proteins: Structure, Function, and Genetics, Vol. 37, No. 4. (1999), pp. 530-543. by Joaquim Mendes, António M. Baptista, Maria A. Carrondo, Cláudio M. Soares posted to protein rotamers sidechains by rsantana on 2007-02-09 19:41:44 as along with 2 people dfgreen apaydin
	The Discretizable Molecular Distance Geometry Problem [My Copy] (5 Aug 2006) by Carlile Lavor, Leo Liberti, Nelson Maculan posted to protein-design protein by rsantana on 2007-02-06 19:23:33 as
	Side chain placement using estimation of distribution algorithms [My Copy] Artificial Intelligence in Medicine, Vol. 39, No. 1. (January 2007), pp. 49-63. by Roberto Santana, Pedro Larranaga, Jose A. Lozano posted to sidechains rotamers protein optimization edas bioinformatics by rsantana on 2006-12-21 15:19:01 as along with 2 people mijam carlk
	Using information theory to search for co-evolving residues in proteins. [My Copy] Bioinformatics, Vol. 21, No. 22. (15 November 2005), pp. 4116-4124. by L. C. Martin, G. B. Gloor, S. D. Dunn, L. M. Wahl posted to bioinformatics interactions protein by rsantana on 2006-12-21 10:23:52 as along with 5 people and 1 group zambujo bioinfo caporaso rabio cjeans biomedical-nlp
	All are not equal: A benchmark of different homology modeling programs [My Copy] Protein Sci, Vol. 14, No. 5. (1 May 2005), pp. 1315-1327. by Bjorn Wallner, Arne Elofsson posted to bioinformatics protein by rsantana on 2006-12-21 10:20:09 as along with 6 people and 2 groups cdeane karbak marcius eweaver BioNica hmk BioinfoCIPF SGU-CIPF
	Membrane proteins: the 'Wild West' of structural biology. [My Copy] Trends Biochem Sci, Vol. 28, No. 3. (March 2003), pp. 137-144. by J. Torres, T. J. Stevens, M. Samsó posted to protein by rsantana on 2006-12-21 10:19:33 as along with 2 people and 2 groups marcius eweaver BioinfoCIPF SGU-CIPF
	A comparative study of machine-learning methods to predict the effects of single nucleotide polymorphisms on protein function. [My Copy] Bioinformatics, Vol. 19, No. 17. (22 November 2003), pp. 2199-2209. by V. G. Krishnan, D. R. Westhead posted to bioinformatics protein by rsantana on 2006-12-21 10:18:57 as along with 5 people and 3 groups chrn marcius eweaver caporaso rlhsiao biomedical-nlp BioinfoCIPF SGU-CIPF
	How well can we predict native contacts in proteins based on decoy structures and their energies? [My Copy] Proteins: Structure, Function, and Genetics, Vol. 52, No. 4. (2003), pp. 598-608. by Jiang Zhu, Qianqian Zhu, Yunyu Shi, Haiyan Liu posted to fitness protein by rsantana on 2006-12-20 19:22:38 as
	Approximate inference for side-chain prediction [My Copy] (2004) by C. Yanover, Y. Weiss posted to bioinformatics optimization propagation protein by rsantana on 2006-12-20 19:22:37 as
	Approximate inference and protein-folding. [My Copy] In Advances in {N}eural {I}nformation {P}rocessing {S}ystems 15 (2003), pp. 1457-1464. by C. Yanover, Y. Weiss edited by S. Becker, S. Thrun, K. Obermayer posted to graphical-models inference propagation protein by rsantana on 2006-12-20 19:22:37 as
	GEM: A Gaussian evolutionary method for predicting protein side-chain conformations [My Copy] Protein Science, Vol. 11 (2002), pp. 1897-1907. by Jinn M. Yang, Chi H. Tsai, Ming J. Hwang, Huai K. Tsai, Jenn K. Hwang, Cheng Y. Kao posted to protein optimization gaussian evolutionary-computation by rsantana on 2006-12-20 19:22:37 as
	Extending the accuracy limits of prediction for side-chain conformations [My Copy] Journal of Molecular Biology, Vol. 311, No. 2. (2001), pp. 421-430. by Z. Xiang, B. Honig posted to protein by rsantana on 2006-12-20 19:22:37 as
	Automatic protein design with all atom force-fields by exact and heuristic optimization [My Copy] Journal of Molecular Biology, Vol. 301, No. 3. (2000), pp. 713-736. by L. Wernisch, S. Hery, S. Wodak posted to protein optimization by rsantana on 2006-12-20 19:22:37 as
	Stably folded de novo proteins from a designed combinatorial library [My Copy] Protein Science, Vol. 12 (2003), pp. 92-102. by Yinan Wei, Tun Liu, Stephen L. Sazinsky, David A. Moffet, Istvan Pelczer, Michael H. Hecht posted to protein by rsantana on 2006-12-20 19:22:37 as
	Searching for folded proteins in vitro and in silico [My Copy] European Journal of Biochemistry, Vol. 271, No. 9. (2004), pp. 1615-1622. by A. L. Watters, D. Baker posted to protein optimization by rsantana on 2006-12-20 19:22:37 as
	Protein building blocks preserved by recombination [My Copy] Nat Struct Biol., Vol. 9, No. 7. (2002), pp. 533-558. by C. A. Voigt, C. Martinez, Z. G. Wang, S. L. Mayo, F. H. Arnold posted to protein ga-theory by rsantana on 2006-12-20 19:22:37 as

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bibtex-import	329
edas	185
protein	110
genetic-algorithms	92
graphical-models	82
optimization	70
propagation	59
eda-theory	53
bioinformatics	47
learning	47
ga-theory	44
bayesian-edas	40
kikuchi-approximations	39
graphs	35
inference	34
region-graphs	33
complexity	31
entropy	31
network	27
tree	24
boa	23
fitness	19
bayesian	18
clustering	18
mixtures	18
evolutionary-computation	17
umda	17
bayesian-networks	16
continuous-edas	16
fda	16
sampling	15
markov-network	13
constraints	12
multiobjective	11
protein-design	11
partial-evaluation	10
rotamers	10
sidechains	10
approximations	9
linkage	9
neuroscience	9
factor-graphs	8
interactions	8
selection	8
genetic-programming	7
hp-model	7
markov-chains	7
modularity	7
pada	7
classifier-systems	6
data-mining	6
ising	6
mean-field	6
sat	6
adaptation	5
monte-carlo	5
turing-machines	5
aco	4
frustration	4
gaussian	4
markov-fields	4
pbil	4
schema-theory	4
testors	4
vision	4
genetics	3
gibbs-sampling	3
ipf	3
mateda	3
neural-networks	3
pattern-recognition	3
snps	3
bmda	2
cavity-method	2
classifiers	2
decimation	2
dynamic-problems	2
heuristics	2
mutation	2
neighborhood-search	2
r	2
reinforcement-learning	2
second-life	2
software	2
swarms	2
testor	2
turing-machine	2
unitation-functions	2
visualization	2
vns	2
artificial-life	1
ba	1
causality	1
chordal-graphs	1
circuit-reconstruction	1
damping	1
dimensionality-reduction	1
dynamic-optimization	1
ecga	1
fuzzy	1
ica	1
inf	1
max-configurations	1
mdl	1
philosophy	1
qsar	1
random-forests	1
realizability	1
rna	1
robotics	1
spanish	1
tabu-search	1
thesis	1
time-continuation	1
xcs	1

rsantana's protein [110 articles] Export

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