WAMIDEX: a web atlas of murine genomic imprinting and differential expression. Export

@article{citeulike:3755593, abstract = {The mouse is an established model organism for the study of genomic imprinting. Mice with genetic material originating from only one parent (e.g., mice with uniparental chromosomal duplications) or gene mutations leading to epigenetic deficiencies have proven to be particularly useful tools. In the process of our studies we have accumulated a large set of expression microarray measurements in samples derived from these types of mice. Here, we present the collation of these and third-party microarray data that are relevant to genomic imprinting into a Web Atlas of Murine genomic Imprinting and Differential EXpression (WAMIDEX: https://atlas.genetics.kcl.ac.uk). WAMIDEX integrates the most comprehensive literature-derived catalog of murine imprinted genes to date with a genome browser that makes the microarray data immediately accessible in annotation-rich genomic context. In addition, WAMIDEX exemplifies the use of the self-organizing map method for the discovery of novel imprinted genes from microarray data. The parent-of-origin-specific expression of imprinted genes is frequently limited to specific tissues or developmental stages, a fact that the atlas reflects in its design and data content.}, author = {Schulz, R. and Woodfine, K. and Menheniott, T. R. and Bourc'his, D. and Bestor, T. and Oakey, R. J.}, citeulike-article-id = {3755593}, citeulike-linkout-0 = {http://view.ncbi.nlm.nih.gov/pubmed/18398312}, citeulike-linkout-1 = {http://www.hubmed.org/display.cgi?uids=18398312}, issn = {1559-2308}, journal = {Epigenetics : official journal of the DNA Methylation Society}, keywords = {bioinformatics, epigenetics, imprinting, mouse, ucsc-browser, wamidex}, number = {2}, pages = {89--96}, posted-at = {2008-12-08 12:36:31}, priority = {0}, title = {WAMIDEX: a web atlas of murine genomic imprinting and differential expression.}, url = {http://view.ncbi.nlm.nih.gov/pubmed/18398312}, volume = {3}, year = {2008} }

TY - JOUR ID - citeulike:3755593 L3 - citeulike-article-id:3755593 N2 - The mouse is an established model organism for the study of genomic imprinting. Mice with genetic material originating from only one parent (e.g., mice with uniparental chromosomal duplications) or gene mutations leading to epigenetic deficiencies have proven to be particularly useful tools. In the process of our studies we have accumulated a large set of expression microarray measurements in samples derived from these types of mice. Here, we present the collation of these and third-party microarray data that are relevant to genomic imprinting into a Web Atlas of Murine genomic Imprinting and Differential EXpression (WAMIDEX: https://atlas.genetics.kcl.ac.uk). WAMIDEX integrates the most comprehensive literature-derived catalog of murine imprinted genes to date with a genome browser that makes the microarray data immediately accessible in annotation-rich genomic context. In addition, WAMIDEX exemplifies the use of the self-organizing map method for the discovery of novel imprinted genes from microarray data. The parent-of-origin-specific expression of imprinted genes is frequently limited to specific tissues or developmental stages, a fact that the atlas reflects in its design and data content. IS - 2 JF - Epigenetics : official journal of the DNA Methylation Society SN - 1559-2308 EP - 96 TI - WAMIDEX: a web atlas of murine genomic imprinting and differential expression. VL - 3 SP - 89 KW - bioinformatics KW - epigenetics KW - imprinting KW - mouse KW - ucsc-browser KW - wamidex AU - Schulz, R AU - Woodfine, K AU - Menheniott, TR AU - Bourc'his, D AU - Bestor, T AU - Oakey, RJ PY - 2008///r UR - http://view.ncbi.nlm.nih.gov/pubmed/18398312 ER -